prot_H-canaliculatus_F_contig1130.1175.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-canaliculatus_F_contig1130.1175.1
Unique Name	prot_H-canaliculatus_F_contig1130.1175.1
Type	polypeptide
Organism	Hapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length	189

Homology

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BLAST of mRNA_H-canaliculatus_F_contig1130.1175.1 vs. uniprot
Match: D8LCY2_ECTSI (Holliday junction resolvase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY2_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 9.240e-51
Identity = 84/100 (84.00%), Postives = 95/100 (95.00%), Query Frame = 0

Query:   89 VVGWPLTRSGRAKGQCLMVLQFLRQLHLKGQVDVPVTLFDERLTSAEARGILRDEGLGRKIADREDETAAMVILQGFLDSAEAEHGGLSSLPTKPGSGDR 188
            VVGWPL++SGRA+GQCLMVLQFLRQLHL+G+VD+PVTLFDER+TS EARGIL+D+GLGRKIA+REDETAAMVILQGFLDSAEA HGGLS+LPT  G GDR
Sbjct:  159 VVGWPLSKSGRAEGQCLMVLQFLRQLHLRGKVDIPVTLFDERMTSVEARGILKDDGLGRKIAEREDETAAMVILQGFLDSAEAVHGGLSTLPTGSGRGDR 258

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BLAST of mRNA_H-canaliculatus_F_contig1130.1175.1 vs. uniprot
Match: A0A2N6ACG1_9BACT (Putative pre-16S rRNA nuclease n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A2N6ACG1_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 5.820e-9
Identity = 43/107 (40.19%), Postives = 58/107 (54.21%), Query Frame = 0

Query:   67 TEPVQRDVAPAKCVLILDRSSQ--VVGWPLTRSGRAKGQCLMVLQFLRQLHLKGQVDVPVTLFDERLTSAEARGILRDEGLGRKIADRE---DETAAMVILQGFLDS 168
            T P   DV      L+ +R  Q  VVG PLT  G       MV +F++ L  +   D PV L DER TS+ A   +RD G+G+K    +   DE AA+++LQG+LDS
Sbjct:   36 TIPGDNDVLSRIVALVRERDIQRIVVGLPLTLRGEEGASAEMVQRFVKAL--REACDTPVDLMDERFTSSIAEQTIRDMGVGKKKRREKGKVDEIAAVILLQGYLDS 140

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BLAST of mRNA_H-canaliculatus_F_contig1130.1175.1 vs. uniprot
Match: A0A7C6E6H1_9BACT (Putative pre-16S rRNA nuclease n=1 Tax=Candidatus Solibacter sp. TaxID=2068625 RepID=A0A7C6E6H1_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 1.330e-8
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 0

Query:   89 VVGWPLTRSGRAKGQCLMVLQFLRQLHLKGQVDVPVTLFDERLTSAEARGILRDEGLG-RKIADREDETAAMVILQGFLDSAEAEHGG 175
            VVG PL  SGR   Q     +F  +L    Q  +PV L+DERLT+AEA+ +LR  G+G RK A   D  AA++IL+ +L++  A   G
Sbjct:   65 VVGLPLKLSGREGAQAQAARRFAEEL--ARQTGLPVELYDERLTTAEAQRVLRASGMGPRKRAQASDRLAAVLILESYLEARAAREQG 150

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BLAST of mRNA_H-canaliculatus_F_contig1130.1175.1 vs. uniprot
Match: UPI001984865E (Holliday junction resolvase RuvX n=1 Tax=Roseiflexaceae bacterium TaxID=2762507 RepID=UPI001984865E)

HSP 1 Score: 58.5 bits (140), Expect = 1.300e-7
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 0

Query:   89 VVGWPLTRSGRAKGQCLMVLQFLRQLHLKGQVDVPVTLFDERLTSAEARGILRDEGL-GRKIADREDETAAMVILQGFLDSAEA 171
            VVG PLT SG    Q L + +F+  L  +  V VP+ LFDERLTSAEA  ++ D GL   +   R DE AA +IL+ +L+S  A
Sbjct:   60 VVGLPLTLSGEIGPQALEIKRFVADL--EQVVRVPIHLFDERLTSAEAERVMIDMGLKAEQRRARIDEMAATIILRDYLNSRRA 141

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BLAST of mRNA_H-canaliculatus_F_contig1130.1175.1 vs. uniprot
Match: A0A7C2GL23_9BACT (Putative pre-16S rRNA nuclease n=2 Tax=Bacteria TaxID=2 RepID=A0A7C2GL23_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 2.330e-7
Identity = 38/92 (41.30%), Postives = 48/92 (52.17%), Query Frame = 0

Query:   89 VVGWPLTRSGRAKGQCLMVLQFLRQLHLKGQVDVPVTLFDERLTSAEARGILRDEGLGRKIADREDETAAMVILQGFLDSAEAEHGGLSSLP 180
            VVGWPL   G          +  R+L  +    VPV+L+DERLTS EA  +LR+ G  R   +R D+ AA VILQ FL +  A       LP
Sbjct:   56 VVGWPLNMDGTVGPAARRAEKLARRL--RALAGVPVSLWDERLTSVEAETLLRERG-ERPTPERVDQVAACVILQDFLTALRAHPDRAWDLP 144

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BLAST of mRNA_H-canaliculatus_F_contig1130.1175.1 vs. uniprot
Match: A0A7V0V0Y7_9CHLR (Holliday junction resolvase RuvX n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V0V0Y7_9CHLR)

HSP 1 Score: 55.8 bits (133), Expect = 4.500e-7
Identity = 37/83 (44.58%), Postives = 47/83 (56.63%), Query Frame = 0

Query:   89 VVGWPLTRSGRAKGQCLMVLQFLRQLHLKGQVDVPVTLFDERLTSAEARGILRDEG-LGRKIADREDETAAMVILQGFLDSAE 170
            VVG PL  SG    Q   V ++   L    Q+ VPV L+DERL++AEA  IL + G   R+   R D  AA VILQ +LD+ E
Sbjct:    9 VVGHPLELSGEVGPQARRVERYAAGL--AAQIPVPVVLWDERLSTAEAERILHESGETSRQYRGRLDAVAAAVILQSYLDAVE 89

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BLAST of mRNA_H-canaliculatus_F_contig1130.1175.1 vs. uniprot
Match: A0A6L7LCV2_9CHLR (Putative pre-16S rRNA nuclease n=3 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6L7LCV2_9CHLR)

HSP 1 Score: 56.6 bits (135), Expect = 5.380e-7
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 0

Query:   89 VVGWPLTRSGRAKGQCLMVLQFLRQLHLKGQVDVPVTLFDERLTSAEARGILRDEGLGRKIADRE--DETAAMVILQGFLD 167
            VVG PL+ SG +  Q   V  F+R+L  +   D+P+   DERL++ +A+G+LR  G  R+  D+   D  AA VILQ +LD
Sbjct:   54 VVGLPLSMSGDSGAQAGKVRGFIREL--RSHTDLPIKTVDERLSTVQAQGMLRQSGRRRRDRDKGQLDAAAAAVILQAYLD 132

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BLAST of mRNA_H-canaliculatus_F_contig1130.1175.1 vs. uniprot
Match: A0A2V7Y3Y4_9BACT (Putative pre-16S rRNA nuclease n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7Y3Y4_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 7.150e-7
Identity = 39/84 (46.43%), Postives = 49/84 (58.33%), Query Frame = 0

Query:   89 VVGWPLTRSGRAKGQCLMVLQFLRQLHLKGQVDVPVTLFDERLTSAEARGILRDEGLGRKIADRE-DETAAMVILQGFLDSAEA 171
            VVG PL   G    Q   VL F+  L  + ++ VPV   DERLT+ EA G LR+ GLG +   R  D+TAA+VILQ +LD   A
Sbjct:   61 VVGLPLNMDGTRGPQAEKVLAFVEAL--RRRLHVPVLPRDERLTTVEAEGRLREAGLGWRERKRVIDQTAAVVILQEYLDQRAA 142

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BLAST of mRNA_H-canaliculatus_F_contig1130.1175.1 vs. uniprot
Match: A0A2E9ZBT1_9BACT (Putative pre-16S rRNA nuclease n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E9ZBT1_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 7.490e-7
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 0

Query:   84 DRSSQVVGWPLTRSGRAKGQCLMVLQFLRQLHLKGQVDVPVTLFDERLTSAEARGILRDEGLGRKIADRE----DETAAMVILQGFLDS 168
            D S  V+G PL   G    Q     QF   +  + ++D+PV+ +DERLTS +A+ IL+ EG   K   RE    DETAA ++LQ FLDS
Sbjct:   52 DVSQIVIGLPLGLKGNYTTQTKKTEQFADLI--RKEIDLPVSFYDERLTSVQAKRILQSEG---KQPSREKELVDETAAAIMLQAFLDS 135

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BLAST of mRNA_H-canaliculatus_F_contig1130.1175.1 vs. uniprot
Match: A0A660X688_9BACT (Putative pre-16S rRNA nuclease n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A660X688_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 7.940e-7
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 0

Query:   84 DRSSQVVGWPLTRSGRAKGQCLMVLQFLRQLHLKGQVDVPVTLFDERLTSAEARGILRDEGLGRKIADRE---DETAAMVILQGFLD 167
            D S  +VG+PL   G    Q L V +F+  L  K ++ VPVTL+DER TS EA+ ILR +GL  K ++ +   D+ +A +ILQ +LD
Sbjct:   52 DVSQVLVGYPLGLRGVKTRQTLEVDRFVEAL--KKRISVPVTLWDERFTSVEAKNILRQKGL--KPSENKGLVDQMSARIILQEYLD 134

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig1130.1175.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig1130.1175.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LCY2_ECTSI	9.240e-51	84.00	Holliday junction resolvase-like protein n=1 Tax=E...	[more]
A0A2N6ACG1_9BACT	5.820e-9	40.19	Putative pre-16S rRNA nuclease n=1 Tax=Ignavibacte...	[more]
A0A7C6E6H1_9BACT	1.330e-8	43.18	Putative pre-16S rRNA nuclease n=1 Tax=Candidatus ...	[more]
UPI001984865E	1.300e-7	46.43	Holliday junction resolvase RuvX n=1 Tax=Roseiflex...	[more]
A0A7C2GL23_9BACT	2.330e-7	41.30	Putative pre-16S rRNA nuclease n=2 Tax=Bacteria Ta...	[more]
A0A7V0V0Y7_9CHLR	4.500e-7	44.58	Holliday junction resolvase RuvX n=1 Tax=Anaerolin...	[more]
A0A6L7LCV2_9CHLR	5.380e-7	41.98	Putative pre-16S rRNA nuclease n=3 Tax=Dehalococco...	[more]
A0A2V7Y3Y4_9BACT	7.150e-7	46.43	Putative pre-16S rRNA nuclease n=1 Tax=Acidobacter...	[more]
A0A2E9ZBT1_9BACT	7.490e-7	42.70	Putative pre-16S rRNA nuclease n=1 Tax=Candidatus ...	[more]
A0A660X688_9BACT	7.940e-7	43.68	Putative pre-16S rRNA nuclease n=1 Tax=Candidatus ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037027	YqgF/RNase H-like domain superfamily	GENE3D	3.30.420.140		coord: 77..175 e-value: 2.9E-18 score: 68.2
IPR005227	Putative pre-16S rRNA nuclease	PFAM	PF03652	RuvX	coord: 88..168 e-value: 5.4E-15 score: 56.0
IPR005227	Putative pre-16S rRNA nuclease	PANTHER	PTHR33317	FAMILY NOT NAMED	coord: 87..171
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 87..169

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig1130	contig	H-canaliculatus_F_contig1130:18250..19935 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90	2022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig1130.1175.1	mRNA_H-canaliculatus_F_contig1130.1175.1	Hapterophycus canaliculatus Oshoro5f female	mRNA	H-canaliculatus_F_contig1130 17413..21054 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-canaliculatus_F_contig1130.1175.1 ID=prot_H-canaliculatus_F_contig1130.1175.1|Name=mRNA_H-canaliculatus_F_contig1130.1175.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=189bp
MANKRVLRHASMFPALLPRRRLEQSSATEIRELSKFRRKAVVRMSSTPQM
GRLLQIERPPETNSGVTEPVQRDVAPAKCVLILDRSSQVVGWPLTRSGRA
KGQCLMVLQFLRQLHLKGQVDVPVTLFDERLTSAEARGILRDEGLGRKIA
DREDETAAMVILQGFLDSAEAEHGGLSSLPTKPGSGDR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR005227	YqgF
IPR037027	YqgF/RNaseH-like_dom_sf