prot_H-canaliculatus_F_contig1090.838.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1090.838.1
Unique Nameprot_H-canaliculatus_F_contig1090.838.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length173
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1090.838.1 vs. uniprot
Match: A0A6H5JMU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU7_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 4.260e-82
Identity = 131/172 (76.16%), Postives = 149/172 (86.63%), Query Frame = 0 
Query:    1 MPRLDHRKLESLVAPRGVPCLQGNGEDAARRRKMVAGAVALQMMYAAFTLAFAAYEIFTSGSLVHVRPLAELFKVVAYSMSCLLVYRNVSVYLRLMLIWTITTAFSGVFQPLVWLDDADGSVIEQRLVWTLLLLSIAGMAGNIIGAITVFPSGRPSSRGGRRGRYKSPVKES 172
            MPRLDHRKLE LV+P GV CLQG+GED A RR+ VAGAV+LQMMYAAFTL FA YEI T GSLVH+RP AELFKVVAYS+SCLLVYR+VS+YLRLMLIWTITTAFSGVFQ L+WL+++ GS IE+ LVWT+L+LSIAGMAGNIIGA+TVFPS   SS   RR RYKS +KE+
Sbjct:    1 MPRLDHRKLERLVSPGGVSCLQGDGEDVALRRRRVAGAVSLQMMYAAFTLGFALYEISTGGSLVHMRPPAELFKVVAYSVSCLLVYRSVSLYLRLMLIWTITTAFSGVFQSLLWLENSGGSAIERGLVWTMLVLSIAGMAGNIIGAVTVFPSVGGSSGKARRRRYKSSLKET 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1090.838.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMU7_9PHAE4.260e-8276.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 116..126
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..34
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 87..92
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 153..172
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 69..86
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 58..68
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 93..115
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 127..152
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 35..57
NoneNo IPR availableTMHMMTMhelixcoord: 37..59
NoneNo IPR availableTMHMMTMhelixcoord: 69..86
NoneNo IPR availableTMHMMTMhelixcoord: 91..113
NoneNo IPR availableTMHMMTMhelixcoord: 128..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1090contigH-canaliculatus_F_contig1090:5125..10451 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1090.838.1mRNA_H-canaliculatus_F_contig1090.838.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1090 5125..11095 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1090.838.1 ID=prot_H-canaliculatus_F_contig1090.838.1|Name=mRNA_H-canaliculatus_F_contig1090.838.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=173bp
MPRLDHRKLESLVAPRGVPCLQGNGEDAARRRKMVAGAVALQMMYAAFTL
AFAAYEIFTSGSLVHVRPLAELFKVVAYSMSCLLVYRNVSVYLRLMLIWT
ITTAFSGVFQPLVWLDDADGSVIEQRLVWTLLLLSIAGMAGNIIGAITVF
PSGRPSSRGGRRGRYKSPVKES*
back to top