prot_H-canaliculatus_F_contig1088.822.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1088.822.1
Unique Nameprot_H-canaliculatus_F_contig1088.822.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length346
Homology
BLAST of mRNA_H-canaliculatus_F_contig1088.822.1 vs. uniprot
Match: A0A6H5K2C5_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2C5_9PHAE)

HSP 1 Score: 352 bits (902), Expect = 9.960e-118
Identity = 195/283 (68.90%), Postives = 221/283 (78.09%), Query Frame = 0
Query:    1 MTMARARHAVACLVLVVLTTTEVVPRVGAFTGGLKAAVTR-PHDCSMAGATAASAVSPRSPRNNPAVASAPPGRGGAGVALPSNGGRRRSAAPSALSMTP-MDFSGGGGSSDPVEKDPREMDPTLEGKPGDSYVKCGKCQACYPMDLEVLGRGRIIECSVCHNKWFQTAERALTLTENFLMKGWTEDRAKDAAESVKRFAGFDLFVGNIPFSVSEKDLGAIFGNFGEVKSASLVTDENGESKGYGSIKMGSAEDGQKAIKALNGIEIQGRSMLVKVGASNSSG 281
            MTM R RHA  CLVL  LTT  V+P VGAF+GGL+ A+T+ PHDCSM  ++  S VSPR P N  A A  P G                  +P+ALSM P MDF G    ++P EKDPREMDP+L+G  GD+YVKCGKCQACYPM+L+VLGRGRIIECSVC N+WFQTAERALTLTENFLMK WTEDR    AE+ K FAGF+LFVGNIPFSVSEKDLGAIFGNFGEVKS +LVTDENG+S+GYGS+KMG+ EDG+KAIKALNGIEIQGRSMLVKVGASNS+G
Sbjct:   30 MTMGRTRHAGLCLVLAALTTMAVIPGVGAFSGGLRVAITQQPHDCSMVASS--STVSPR-PLNPAAAAVTPSGXXXXXXXX----------SPTALSMAPPMDFGG----AEPAEKDPREMDPSLQGSAGDTYVKCGKCQACYPMELDVLGRGRIIECSVCGNRWFQTAERALTLTENFLMKDWTEDRVAATAEAAKNFAGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKVGASNSAG 295          
BLAST of mRNA_H-canaliculatus_F_contig1088.822.1 vs. uniprot
Match: A0A7S3TR26_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TR26_EMIHU)

HSP 1 Score: 107 bits (266), Expect = 6.040e-24
Identity = 59/174 (33.91%), Postives = 95/174 (54.60%), Query Frame = 0
Query:  116 PREMDPTLEGKPGDSYVKCGKCQACYPMDLEVLGRGRIIEC--SVCHNKWFQTAERALTLTENFLMKGWTEDRAKD---AAESVKRFAGFDLFVGNIPFSVSEKDLGAIFGNFGEVKSASLVTDENGESKGYGSIKMGSAEDGQKAIKALNGIEIQGRSMLVKVGASNSSGMGG 284
            PR     ++ K    +V C +C+A + +D      GR + C  + C ++WFQTA+R  TL     +  + ++  KD   A +S +    F++FVGN+ +SV+E DL  +F   G V    ++TD++G  +G+G + M     G +A+K L+G E+QGRS+ V  G  N  G GG
Sbjct:   21 PRHESALMQTKAPSKFVTCARCKATFEVDEADFATGRQVRCGGTGCDHEWFQTADRLQTLPNGMELVEYPQEM-KDRIAAGKSAEPVGRFNIFVGNLAYSVAEDDLREVFEGIGSVAKVIIMTDDDGRPRGFGFVNMEEEAAGARAVKELDGYELQGRSITVSEGKQNDRGRGG 193          
BLAST of mRNA_H-canaliculatus_F_contig1088.822.1 vs. uniprot
Match: I2CR05_NANGC (RRM domain-containing protein (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CR05_NANGC)

HSP 1 Score: 108 bits (269), Expect = 1.530e-23
Identity = 54/160 (33.75%), Postives = 94/160 (58.75%), Query Frame = 0
Query:  131 YVKCGKCQACYPMDLEVLG-RGRIIECSVCHNKWFQTAERALTLTENFLMKGWTEDRAKDAAESVKRF----------AGFDLFVGNIPFSVSEKDLGAIFGNFGEVKSASLVTDENGESKGYGSIKMGSAEDGQKAIKALNGIEIQGRSMLVKVGASNS 279
            +V+CG+C A Y +  +++   G  ++C VC + WFQ + R   L+  +++K + ED  +  AE+V+                +FVGN+PFS++E D+  +F   G V S ++V D+   SKG+G ++M   E+G++AI AL+G E+ GR + V++G S +
Sbjct:  107 FVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKA 266          
BLAST of mRNA_H-canaliculatus_F_contig1088.822.1 vs. uniprot
Match: A0A6U4MCT9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4MCT9_HEMAN)

HSP 1 Score: 103 bits (256), Expect = 6.280e-22
Identity = 58/169 (34.32%), Postives = 93/169 (55.03%), Query Frame = 0
Query:  129 DSYVKCGKCQACYPMDLEVLGRGRIIECSVCHNKWFQTAERALTLTENFLMKGWTEDRAKDAAESV-------KRFAGFDLFVGNIPFSVSEKDLGAIFGNFGEVKSASLVTDE-NGESKGYGSIKMGSAEDGQKAIKALNGIEIQGRSMLVKVGASNSSGMGGRGGGR 289
            + Y  CG C+A Y +DLE LG GR ++C+VC + WFQ+A R  T+  +  ++ +  +  K+  +++        R     LFVGN+PFS++E  L  +F  +GEV S S++ D   G  KGYG +     + G+ A+  ++G+ + GR + VK+        GG  GGR
Sbjct:   98 EKYATCGTCKASYILDLEELGAGRKVKCAVCDHTWFQSAARLQTVRSSDKVQPFPVEEFKERQKALGNVVTRHDRKGAVTLFVGNMPFSITEDKLKGVFEEYGEVASISIICDPATGRPKGYGFVDYVEKDCGEVAMNQIDGMLVDGRELAVKISEDK---FGGSRGGR 263          
BLAST of mRNA_H-canaliculatus_F_contig1088.822.1 vs. uniprot
Match: A0A2V3J103_9FLOR (Putative RNA-binding protein RbpE n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J103_9FLOR)

HSP 1 Score: 101 bits (252), Expect = 3.030e-21
Identity = 56/167 (33.53%), Postives = 87/167 (52.10%), Query Frame = 0
Query:  131 YVKCGKCQACYPMDLEVLGRGRIIECSVCHNKWFQTAERALTLTENFLMKGWTEDRAKDAAE--SVKRFAG----------------FDLFVGNIPFSVSEKDLGAIFGNFGEVKSASLVTDENGESKGYGSIKMGSAEDGQKAIKALNGIEIQGRSMLVKVGASNS 279
            Y KC KC A Y +D  VLG GR + CSVC N+WFQ  +R   + E      +  DR  +  E     R  G                F +F+GN+P+SV+E++L  +  +  + K  S+VTD++G SKG+    + S E+  + +++L+   I GR++ V+ G  NS
Sbjct:  111 YTKCAKCSAAYELDPLVLGNGRRVACSVCSNEWFQKPDRLFKMRETEQFSEYPMDRKAELLERNQQNRARGGRRRDTRDRRPTYTKTFSVFIGNLPYSVTEQELTELISSVVKPKRISIVTDQDGNSKGFAFADVQSEEEVDQIVRSLDATRIAGRTIAVRPGKKNS 277          
BLAST of mRNA_H-canaliculatus_F_contig1088.822.1 vs. uniprot
Match: L1IF02_GUITC (RRM domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IF02_GUITC)

HSP 1 Score: 100 bits (248), Expect = 3.350e-21
Identity = 57/156 (36.54%), Postives = 87/156 (55.77%), Query Frame = 0
Query:  131 YVKCGKCQACYPMDLEVLGR-GRIIECSVCHNKWFQTAER-----ALTLTENFLMKGWTEDRAKDAAESVKRF-----AGFDLFVGNIPFSVSEKDLGAIFGNFGEVKSASLVTD-ENGESKGYGSIKMGSAEDGQKAIKALNGIEIQGRSMLVKV 274
            Y  CGKC A Y ++   LG  G+ ++CSVC+NKWFQ+A R     A +    F +  W +    ++    K+F       F LFVGN+PF +SE +L A+F   GEV S SL+ D E+G  +G+G +   + +  + A+  LNG+ + GR + V +
Sbjct:   55 YTTCGKCGAVYVINPADLGSDGQKVQCSVCNNKWFQSAARLAEAPAGSTFRAFPVSNWQKQDQANSQGGEKKFRHDRKGAFTLFVGNLPFRISEAELQALFEKHGEVVSVSLIHDQESGRPRGFGFVDYDNEQSAKDAVSNLNGMPLDGREISVSI 210          
BLAST of mRNA_H-canaliculatus_F_contig1088.822.1 vs. uniprot
Match: A0A8J5X7H2_DIALT (RRM domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X7H2_DIALT)

HSP 1 Score: 100 bits (249), Expect = 6.010e-21
Identity = 56/146 (38.36%), Postives = 83/146 (56.85%), Query Frame = 0
Query:  131 YVKCGKCQACYPMDLEVL-GRGRIIECSVCHNKWFQTAERALTLTENFLMKGWTEDRA--KDAAESVKRFAGF-DLFVGNIPFSVSEKDLGAIFGNFGEVKSASLVTDENGESKGYGSIKMGSAEDGQKAIKALNGIEIQGRSMLV 272
            +  C +C A Y +D+ +  G+G  + C+VC N WFQ  ER +   + F +  + E+R   + A     R  G  +++VGN+PF++S+ DL  +F  FG V    LV DE G SKG+G ++M S E+GQKAI  LN     GR + V
Sbjct:   73 FAVCSRCGAIYDVDMALFRGKGAKVRCTVCSNTWFQLTERLVEKPDAFDIVSFPEERRVERPAVLDSPRGGGIINIYVGNMPFALSDVDLANLFAPFGTVTKIMLVRDEIGRSKGFGFVEMASEEEGQKAILELNDRAFGGRPITV 218          
BLAST of mRNA_H-canaliculatus_F_contig1088.822.1 vs. uniprot
Match: A0A7S1Z4Z8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z4Z8_TRICV)

HSP 1 Score: 94.0 bits (232), Expect = 8.530e-19
Identity = 55/153 (35.95%), Postives = 89/153 (58.17%), Query Frame = 0
Query:  130 SYVKCGKCQACYPM---DLEVLGRGRIIECSVCHNKWFQTAERALTLTENFLMKGWTED---RAKDAAESVKR--FAGFDLF-VGNIPFSVSEKDLGAIFGNFGEVKSASLVTDENGESKGYGSIKMGSAEDGQKAIKALNGIEIQGRSMLVK 273
            +YV+CG+C A Y +   DL   G+GR +ECSVC + W+Q+ +R   L+  F  + + +    R K   E+ +   F G   F VGN+ +   E+ +   F   G V   SL+TDE+G S+G+  + M + EDG+KA++ L+G E+ GR++ V+
Sbjct:   79 TYVQCGRCHAAYAIQEDDLGDRGKGRRVECSVCGHSWYQSRDRLFGLSTGFEYRPFPQSDVVRVKSNLEAGRPADFRGVAKFYVGNLDYGTDEESVRVHFETAGTVGDVSLITDEDGRSRGFAFVTMMTEEDGEKAVQ-LDGTELAGRNISVR 230          
BLAST of mRNA_H-canaliculatus_F_contig1088.822.1 vs. uniprot
Match: A0A7S0QSN1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QSN1_9CRYP)

HSP 1 Score: 87.0 bits (214), Expect = 2.250e-17
Identity = 48/118 (40.68%), Postives = 66/118 (55.93%), Query Frame = 0
Query:  130 SYVKCGKCQACYPMDLEVLG-RGRIIECSVCHNKWFQTAERALTL----------TENFLMKGWTEDRAKDAAESVK--RFAGFDLFVGNIPFSVSEKDLGAIFGNFGEVKSASLVTD 234
            +Y  CG C+A Y M  E+LG  GR ++C+VC N WFQ+A++  TL           E +   G + D  K  A  VK  R     LFVGN+PFS++E  + A FG +GEV S S++ D
Sbjct:    7 TYTSCGNCRAAYAMTPEMLGPNGRRVKCAVCSNVWFQSADKLNTLRAGYSFEPFPVEQYKAGGMSRDSGKAPAGVVKHTRTGAVTLFVGNMPFSMTEDKIRAFFGTYGEVTSVSIIID 124          
BLAST of mRNA_H-canaliculatus_F_contig1088.822.1 vs. uniprot
Match: A0A7S1TD30_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD30_9RHOD)

HSP 1 Score: 85.5 bits (210), Expect = 1.700e-15
Identity = 54/164 (32.93%), Postives = 87/164 (53.05%), Query Frame = 0
Query:  130 SYVKCGKCQACYPM-DLEVLGRGRIIECSVCHNKWFQTAERALTLTENFLMKGWTE-------DRAKDAAESVKRFAG-------FDLFVGNIPFSVSEKDLGAIFGNFGEVKSASLVTDENGESKGYGSIKMGSAEDGQKAIKALNGIEIQGRSMLVKVGASN 278
            +Y +C +C + + + D E+  +GR ++C VC + WFQ   R   L E   ++  T        +R K  +      AG       F LFVGN+PFSVSE DL  IF    +V+   + T E G S+G+  + + S ED + AI+ ++G+++ GR + V+ G S+
Sbjct:  100 TYTECVRCGSKFAVSDRELGDKGRKVQCGVCKHVWFQHTNRLSELAEGESLRDMTPAEQDIAIERTKTRSRRATSDAGASEGGSQFTLFVGNLPFSVSEDDLRVIFSQHCKVQRVHIATTE-GRSRGFAFVDVASEEDMKLAIEKVSGMDVGGREVSVRQGNSS 262          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1088.822.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2C5_9PHAE9.960e-11868.90RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S3TR26_EMIHU6.040e-2433.91Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
I2CR05_NANGC1.530e-2333.75RRM domain-containing protein (Fragment) n=3 Tax=M... [more]
A0A6U4MCT9_HEMAN6.280e-2234.32Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A2V3J103_9FLOR3.030e-2133.53Putative RNA-binding protein RbpE n=1 Tax=Gracilar... [more]
L1IF02_GUITC3.350e-2136.54RRM domain-containing protein n=1 Tax=Guillardia t... [more]
A0A8J5X7H2_DIALT6.010e-2138.36RRM domain-containing protein n=1 Tax=Diacronema l... [more]
A0A7S1Z4Z8_TRICV8.530e-1935.95Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S0QSN1_9CRYP2.250e-1740.68Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S1TD30_9RHOD1.700e-1532.93Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 201..273
e-value: 1.0E-21
score: 88.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 202..269
e-value: 6.8E-19
score: 67.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 200..277
score: 17.796
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 182..295
e-value: 2.7E-23
score: 84.4
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 184..323
NoneNo IPR availablePANTHERPTHR23003:SF3FI21236P1coord: 184..323
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..345
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..29
score: 0.627
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 202..307

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1088contigH-canaliculatus_F_contig1088:20688..25188 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1088.822.1mRNA_H-canaliculatus_F_contig1088.822.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1088 20688..25188 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1088.822.1 ID=prot_H-canaliculatus_F_contig1088.822.1|Name=mRNA_H-canaliculatus_F_contig1088.822.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=346bp
MTMARARHAVACLVLVVLTTTEVVPRVGAFTGGLKAAVTRPHDCSMAGAT
AASAVSPRSPRNNPAVASAPPGRGGAGVALPSNGGRRRSAAPSALSMTPM
DFSGGGGSSDPVEKDPREMDPTLEGKPGDSYVKCGKCQACYPMDLEVLGR
GRIIECSVCHNKWFQTAERALTLTENFLMKGWTEDRAKDAAESVKRFAGF
DLFVGNIPFSVSEKDLGAIFGNFGEVKSASLVTDENGESKGYGSIKMGSA
EDGQKAIKALNGIEIQGRSMLVKVGASNSSGMGGRGGGRMGGGRGGSFQG
RGGGGGGYQGRGGGGGYRGGRGGGGYSGGGGGSGGGGGGYNGGGY*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom