mRNA_H-canaliculatus_F_contig15447.4025.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_F_contig15447.4025.1
Unique Name	mRNA_H-canaliculatus_F_contig15447.4025.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)

Homology

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BLAST of mRNA_H-canaliculatus_F_contig15447.4025.1 vs. uniprot
Match: A0A6H5JH84_9PHAE (Mre11_DNA_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH84_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 4.820e-21
Identity = 47/55 (85.45%), Postives = 53/55 (96.36%), Query Frame = 1

Query:   10 QVEPVESLVG-FRICQPGSSVATSLCEGEAVPKHVGLLEIRGNDFRIQSLPLTQV 171
            QVEP+ESLVG FRI QPGSSVATSLCEGEAVPK+VGLLEIRGNDFR+Q++PL+QV
Sbjct:  213 QVEPMESLVGTFRISQPGSSVATSLCEGEAVPKNVGLLEIRGNDFRLQAVPLSQV 267

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BLAST of mRNA_H-canaliculatus_F_contig15447.4025.1 vs. uniprot
Match: A0A7S0C895_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C895_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.740e-17
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1

Query:   13 VEPVESLVG-FRICQPGSSVATSLCEGEAVPKHVGLLEIRGNDFRIQSLPLTQV 171
            +EP +SLVG FRICQPGSSVATSL  GE+V KHVG+LEIRG +FRI  LPL +V
Sbjct:   78 IEPTDSLVGTFRICQPGSSVATSLTPGESVRKHVGILEIRGEEFRITPLPLVEV 131

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BLAST of mRNA_H-canaliculatus_F_contig15447.4025.1 vs. uniprot
Match: A0A7S2UFV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UFV9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.350e-13
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 1

Query:   13 VEPVESLVG-FRICQPGSSVATSLCEGEAVPKHVGLLEIRGNDFRIQSLPLTQV 171
            +E +ES VG +RI QPGSSVATSL  GE+V KHVG+L++RGN FRI+ LPL+QV
Sbjct:  326 IEAMESAVGTYRITQPGSSVATSLSAGESVRKHVGILDVRGNQFRIKKLPLSQV 379

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BLAST of mRNA_H-canaliculatus_F_contig15447.4025.1 vs. uniprot
Match: A0A7S3ZYR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYR3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.680e-13
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1

Query:   10 QVEPVESLVG-FRICQPGSSVATSLCEGEAVPKHVGLLEIRGNDFRIQSLPLTQV 171
            Q++P ES VG FR+CQPGSSVA SL EGEA PKH GLL++RG +FR+  L LT V
Sbjct:  313 QIKPRESAVGTFRVCQPGSSVACSLVEGEAKPKHCGLLQVRGAEFRLTPLRLTCV 367

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BLAST of mRNA_H-canaliculatus_F_contig15447.4025.1 vs. uniprot
Match: A0A8J2X2L8_9STRA (Double-strand break repair protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2L8_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.690e-13
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1

Query:   10 QVEPVESLVG-FRICQPGSSVATSLCEGEAVPKHVGLLEIRGNDFRIQSLPLTQV 171
            Q++P ES VG FR+CQPGSSVA SL EGEA PKH GLL++RG +FR+  L LT V
Sbjct:  246 QIKPRESAVGTFRVCQPGSSVACSLVEGEAKPKHCGLLQVRGAEFRLTPLRLTCV 300

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BLAST of mRNA_H-canaliculatus_F_contig15447.4025.1 vs. uniprot
Match: A0A7S1Z5E1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z5E1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.370e-13
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 1

Query:   10 QVEPVESLVG-FRICQPGSSVATSLCEGEAVPKHVGLLEIRGNDFRIQSLPLTQV 171
            ++ P ESLVG FRI QPGSSVATSL +GEAV KH+GLL+IRG  FR++ +PL+ V
Sbjct:  200 RIVPDESLVGTFRITQPGSSVATSLVQGEAVRKHIGLLDIRGCQFRLKPIPLSMV 254

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BLAST of mRNA_H-canaliculatus_F_contig15447.4025.1 vs. uniprot
Match: UPI00035998BF (double-strand break repair protein MRE11 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00035998BF)

HSP 1 Score: 70.5 bits (171), Expect = 8.760e-13
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1

Query:    7 VQVEPVESLVGFRICQPGSSVATSLCEGEAVPKHVGLLEIRGNDFRIQSLPLTQV 171
            V+  P + L    +CQPGSSVATSL EGE VPKHVGLLE++G DFR++S+PL  V
Sbjct:  255 VEWNPTQKLF---VCQPGSSVATSLSEGEMVPKHVGLLEVKGKDFRMKSIPLKTV 306

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BLAST of mRNA_H-canaliculatus_F_contig15447.4025.1 vs. uniprot
Match: A0A3S1B899_ELYCH (Double-strand break repair protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1B899_ELYCH)

HSP 1 Score: 70.1 bits (170), Expect = 1.190e-12
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 1

Query:    7 VQVEPVESLVGFRICQPGSSVATSLCEGEAVPKHVGLLEIRGNDFRIQSLPLTQV 171
            V+  PV+ L    +CQPGSS+ATSL EGE VPKHVGLLE+   DFR+QS+PL  V
Sbjct:  175 VEWNPVQQLY---VCQPGSSIATSLSEGETVPKHVGLLEVNKKDFRMQSIPLKSV 226

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BLAST of mRNA_H-canaliculatus_F_contig15447.4025.1 vs. uniprot
Match: A0A1Y2FQ92_PROLT (Apoenzyme n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2FQ92_PROLT)

HSP 1 Score: 69.7 bits (169), Expect = 1.490e-12
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 1

Query:   13 VEPVESLV-GFRICQPGSSVATSLCEGEAVPKHVGLLEIRGNDFRIQSLPLTQV 171
            ++PVE+   GF +CQPGSSVATSLC+GEA  KHVG+L I+G DF ++ +PL  V
Sbjct:  253 IDPVENQEQGFAVCQPGSSVATSLCQGEAQTKHVGILTIKGKDFSMEKIPLKTV 306

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BLAST of mRNA_H-canaliculatus_F_contig15447.4025.1 vs. uniprot
Match: A0A7S1ZWN5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZWN5_TRICV)

HSP 1 Score: 66.6 bits (161), Expect = 2.160e-12
Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = 1

Query:   13 VEPVESLVG-FRICQPGSSVATSLCEGEAVPKHVGLLEIRGNDFRIQSLPLTQV 171
            ++P+ES+VG FRI QPGSSVATSL  GE+  K VG+L++RG  FR++ +PL+QV
Sbjct:   54 IDPMESVVGMFRITQPGSSVATSLTAGESERKRVGILDVRGQSFRLRPVPLSQV 107

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig15447.4025.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig15447.4025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JH84_9PHAE	4.820e-21	85.45	Mre11_DNA_bind domain-containing protein n=2 Tax=E...	[more]
A0A7S0C895_9STRA	5.740e-17	72.22	Hypothetical protein (Fragment) n=1 Tax=Proboscia ...	[more]
A0A7S2UFV9_9STRA	1.350e-13	66.67	Hypothetical protein (Fragment) n=1 Tax=Attheya se...	[more]
A0A7S3ZYR3_9STRA	4.680e-13	65.45	Hypothetical protein (Fragment) n=1 Tax=Pelagomona...	[more]
A0A8J2X2L8_9STRA	4.690e-13	65.45	Double-strand break repair protein n=1 Tax=Pelagom...	[more]
A0A7S1Z5E1_9STRA	6.370e-13	65.45	Hypothetical protein (Fragment) n=1 Tax=Ditylum br...	[more]
UPI00035998BF	8.760e-13	61.82	double-strand break repair protein MRE11 n=1 Tax=A...	[more]
A0A3S1B899_ELYCH	1.190e-12	61.82	Double-strand break repair protein n=1 Tax=Elysia ...	[more]
A0A1Y2FQ92_PROLT	1.490e-12	59.26	Apoenzyme n=1 Tax=Protomyces lactucae-debilis TaxI...	[more]
A0A7S1ZWN5_TRICV	2.160e-12	59.26	Hypothetical protein (Fragment) n=1 Tax=Trieres ch...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig15447	contig	H-canaliculatus_F_contig15447:134..304 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	93.2
Seed ortholog evalue	4.2e-17
Seed eggNOG ortholog	2880.D7FN26
Preferred name	MRE11
KEGG ko	ko:K10865
KEGG Pathway	ko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG Module	M00291,M00292,M00295
GOs	GO:0000228,GO:0000785,GO:0000791,GO:0000793,GO:0000794,GO:0000795,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0070013,GO:0099086
EggNOG free text desc.	manganese ion binding
EggNOG OGs	COG0420@1,KOG2310@2759
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko03032,ko03400
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	171
Cds size	171
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929280.8762023-CDS-H-canaliculatus_F_contig15447:133..304	1622929280.8762023-CDS-H-canaliculatus_F_contig15447:133..304	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig15447 134..304 +
1696845748.9652216-CDS-H-canaliculatus_F_contig15447:133..304	1696845748.9652216-CDS-H-canaliculatus_F_contig15447:133..304	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig15447 134..304 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig15447.4025.1	prot_H-canaliculatus_F_contig15447.4025.1	Hapterophycus canaliculatus Oshoro5f female	polypeptide	H-canaliculatus_F_contig15447 134..304 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_F_contig15447:134..304+
coding sequence from alignment at H-canaliculatus_F_contig15447:134..304+

protein sequence of mRNA_H-canaliculatus_F_contig15447.4025.1

>prot_H-canaliculatus_F_contig15447.4025.1 ID=prot_H-canaliculatus_F_contig15447.4025.1|Name=mRNA_H-canaliculatus_F_contig15447.4025.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=57bp
MFVQVEPVESLVGFRICQPGSSVATSLCEGEAVPKHVGLLEIRGNDFRIQ
SLPLTQV

mRNA from alignment at H-canaliculatus_F_contig15447:134..304+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_F_contig15447.4025.1 ID=mRNA_H-canaliculatus_F_contig15447.4025.1|Name=mRNA_H-canaliculatus_F_contig15447.4025.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=171bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15447:134..304+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTTGTCCAGGTGGAGCCTGTGGAGTCTCTGGTGGGATTCCGTATCTG
TCAGCCGGGGTCGTCCGTGGCAACCTCGCTATGCGAAGGGGAGGCGGTGC
CGAAGCACGTGGGACTGCTTGAGATAAGGGGCAACGACTTTCGCATACAG
TCGCTACCGCTCACGCAGGTG

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15447:134..304+

>mRNA_H-canaliculatus_F_contig15447.4025.1 ID=mRNA_H-canaliculatus_F_contig15447.4025.1|Name=mRNA_H-canaliculatus_F_contig15447.4025.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=342bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15447:134..304+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTTGTCCAGGTGGAGCCTGTGGAGTCTCTGGTGGGATTCCGTATCTG
TCAGCCGGGGTCGTCCGTGGCAACCTCGCTATGCGAAGGGGAGGCGGTGC
CGAAGCACGTGGGACTGCTTGAGATAAGGGGCAACGACTTTCGCATACAG
TCGCTACCGCTCACGCAGGTGATGTTTGTCCAGGTGGAGCCTGTGGAGTC
TCTGGTGGGATTCCGTATCTGTCAGCCGGGGTCGTCCGTGGCAACCTCGC
TATGCGAAGGGGAGGCGGTGCCGAAGCACGTGGGACTGCTTGAGATAAGG
GGCAACGACTTTCGCATACAGTCGCTACCGCTCACGCAGGTG