mRNA_H-canaliculatus_F_contig1544.4023.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1544.4023.1
Unique NamemRNA_H-canaliculatus_F_contig1544.4023.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1544.4023.1 vs. uniprot
Match: D7FVU6_ECTSI (Pyr_redox_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU6_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 1.730e-47
Identity = 82/122 (67.21%), Postives = 98/122 (80.33%), Query Frame = 1 
Query:    1 MSQKVVVIGGGYAGIEAAKGLDVRFDVTLVAGGEAFRHVIYGLRATALPEQTPKMLPPYDNLLKKGTVLKCSASKINAEESTVTLSTGDILPYDYLVLATGILHPKTGEICFITVKGAEDTS 366
            M+QKVVVIGGGYAG+EAAK LD +FDVTLVAGG+AFRH++YGLRA+ LP+QTP+ML PY N L  GTV  C A++INA+E TVTLSTG+ LPYD+LVLATG LHP T  +   T   AE T+
Sbjct:  122 MAQKVVVIGGGYAGVEAAKALDAKFDVTLVAGGDAFRHIVYGLRASVLPDQTPRMLVPYANFLSNGTVKTCKATRINADECTVTLSTGESLPYDFLVLATGFLHPNTVGVGNNTGTVAEQTA 243
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1544.4023.1 vs. uniprot
Match: A0A6H5KYH0_9PHAE (Pyr_redox_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH0_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 2.510e-47
Identity = 77/107 (71.96%), Postives = 92/107 (85.98%), Query Frame = 1 
Query:    1 MSQKVVVIGGGYAGIEAAKGLDVRFDVTLVAGGEAFRHVIYGLRATALPEQTPKMLPPYDNLLKKGTVLKCSASKINAEESTVTLSTGDILPYDYLVLATGILHPKT 321
            M+QKVVVIGGGYAG+EAAKGLD +F+VTLV GG+AFRH++YGLRA+ LP+QTP+ML PY N L  GTV  C A++INA+E TVTLSTG+ LPYD+LVLATG LHP T
Sbjct:    1 MAQKVVVIGGGYAGVEAAKGLDAKFNVTLVTGGDAFRHIVYGLRASVLPDQTPRMLIPYANCLSNGTVKTCKATRINADECTVTLSTGESLPYDFLVLATGFLHPNT 107
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1544.4023.1 vs. uniprot
Match: A0A6B3BWU7_9ACTN (FAD-dependent oxidoreductase n=3 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A6B3BWU7_9ACTN)

HSP 1 Score: 92.8 bits (229), Expect = 7.120e-20
Identity = 54/120 (45.00%), Postives = 67/120 (55.83%), Query Frame = 1 
Query:   13 VVVIGGGYAGIEAAKGLDVRFDVTLVAGGEAFRHVIYGLRATALPEQTPKMLPPYDNLLKKGTVLKCSASKINAEESTVTLSTGDILPYDYLVLATGILHPKTGEICFITVKGAEDTSGG 372
            VVVIGGGYAG+  AK LD   +VTLV   E F H I  LRA   PE T     PYD LL+ G V    A +++  E  V L+TG+ LPYD +V+ATG  +P+       TV+ A     G
Sbjct:    6 VVVIGGGYAGVRLAKRLDETANVTLVDRKEVFFHRIASLRAGVHPEWTVAPFIPYDRLLRNGRVAVGKAVRVDTAERQVVLATGECLPYDVVVIATGADYPEPARFTGTTVEEAAQAFAG 125
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1544.4023.1 vs. uniprot
Match: UPI0004BF71F3 (FAD-dependent oxidoreductase n=3 Tax=Streptomyces TaxID=1883 RepID=UPI0004BF71F3)

HSP 1 Score: 92.8 bits (229), Expect = 7.120e-20
Identity = 54/120 (45.00%), Postives = 66/120 (55.00%), Query Frame = 1 
Query:   13 VVVIGGGYAGIEAAKGLDVRFDVTLVAGGEAFRHVIYGLRATALPEQTPKMLPPYDNLLKKGTVLKCSASKINAEESTVTLSTGDILPYDYLVLATGILHPKTGEICFITVKGAEDTSGG 372
            VVVIGGGYAG+  AK LD    VTLV   EAF H +  LRA   PE T     PYD LL  G V+     +I+  E  V L+TG+ LPYD +V+ATG  +P+    C  T + A     G
Sbjct:    6 VVVIGGGYAGVRLAKRLDGTARVTLVDRKEAFFHRVASLRAGVRPEWTHTPFIPYDRLLHHGRVIAGKVLRIDTAERQVVLATGERLPYDVVVIATGADYPEPARFCGTTTEEAAKAFAG 125
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1544.4023.1 vs. uniprot
Match: UPI0019057A1A (FAD-dependent oxidoreductase n=1 Tax=Streptomyces sp. Y2F8-2 TaxID=2759675 RepID=UPI0019057A1A)

HSP 1 Score: 92.4 bits (228), Expect = 9.870e-20
Identity = 55/120 (45.83%), Postives = 67/120 (55.83%), Query Frame = 1 
Query:   13 VVVIGGGYAGIEAAKGLDVRFDVTLVAGGEAFRHVIYGLRATALPEQTPKMLPPYDNLLKKGTVLKCSASKINAEESTVTLSTGDILPYDYLVLATGILHPKTGEICFITVKGAEDTSGG 372
            VVVIGGGYAG+  AK LD    VTLV   E F H I  LRA   PE T     PYD LL+ G V+   A +I+  E  V L+TG+ LPYD LV+ATG  +P+       T + A  +  G
Sbjct:    6 VVVIGGGYAGVRLAKRLDALARVTLVDRKEVFFHRIASLRAGVRPEWTATPFIPYDRLLRNGRVVVGKAVRIDTAERHVVLATGERLPYDVLVIATGADYPEPARFTGTTTEEAAKSFAG 125
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1544.4023.1 vs. uniprot
Match: UPI000D03F6A3 (FAD-dependent oxidoreductase n=2 Tax=Streptomyces TaxID=1883 RepID=UPI000D03F6A3)

HSP 1 Score: 92.0 bits (227), Expect = 1.370e-19
Identity = 55/120 (45.83%), Postives = 67/120 (55.83%), Query Frame = 1 
Query:   13 VVVIGGGYAGIEAAKGLDVRFDVTLVAGGEAFRHVIYGLRATALPEQTPKMLPPYDNLLKKGTVLKCSASKINAEESTVTLSTGDILPYDYLVLATGILHPKTGEICFITVKGAEDTSGG 372
            VVVIGGGYAG+  AK LD    VTLV   E F H I  LRA   PE T     PYD LL+ G V+   A +I   E  V L TG+ LPYD +V+ATG  +P+       TV+ A ++  G
Sbjct:    6 VVVIGGGYAGVRLAKRLDDTARVTLVDRKEVFFHRIASLRAGVHPEWTITPFIPYDRLLRNGRVVVGKAVRIETAERQVVLGTGERLPYDVVVIATGADYPEPARFAGTTVEEAAESFAG 125
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1544.4023.1 vs. uniprot
Match: UPI00178FAFFF (FAD-dependent oxidoreductase n=1 Tax=Streptomyces sp. TaxID=1931 RepID=UPI00178FAFFF)

HSP 1 Score: 91.7 bits (226), Expect = 1.900e-19
Identity = 54/101 (53.47%), Postives = 61/101 (60.40%), Query Frame = 1 
Query:   13 VVVIGGGYAGIEAAKGLDVRFDVTLVAGGEAFRHVIYGLRATALPEQTPKMLPPYDNLLKKGTVLKCSASKINAEESTVTLSTGDILPYDYLVLATGILHP 315
            VVVIGGGYAG+  AK LD    VTLV   E F H I  LRA   PE T     PYD LL+ G V    A +I+  E  VTL+TG+ LPYD LVLATG  +P
Sbjct:    6 VVVIGGGYAGVRLAKRLDATARVTLVDRKEVFFHRIASLRAGVRPEWTATPFIPYDRLLRNGRVAVGEAVRIDTVERHVTLATGERLPYDVLVLATGADYP 106
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1544.4023.1 vs. uniprot
Match: A0A3N4SJ04_9ACTN (NADH dehydrogenase FAD-containing subunit n=1 Tax=Streptomyces sp. Ag109_O5-1 TaxID=1938851 RepID=A0A3N4SJ04_9ACTN)

HSP 1 Score: 91.3 bits (225), Expect = 2.630e-19
Identity = 53/102 (51.96%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:   13 VVVIGGGYAGIEAAKGLDVRFDVTLVAGGEAFRHVIYGLRATALPEQTPKMLPPYDNLLKKGTVLKCSASKINAEESTVTLSTGDILPYDYLVLATGILHPK 318
            VVVIGGGYAGI  AK LD    VTLV   E F H I  LRA   PE T     PYD LL  G+V+   A +++  E  V L+TGD LPYD LV+ATG  +P+
Sbjct:    6 VVVIGGGYAGIRLAKKLDAAAHVTLVDRKEVFFHRIASLRAGVRPEWTGAPFIPYDRLLTHGSVVVGKAVRVDTVERQVVLATGDRLPYDVLVVATGADYPE 107
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1544.4023.1 vs. uniprot
Match: A0A3S9HVI3_9ACTN (Oxidoreductase n=9 Tax=Actinomycetia TaxID=1760 RepID=A0A3S9HVI3_9ACTN)

HSP 1 Score: 91.3 bits (225), Expect = 2.630e-19
Identity = 54/119 (45.38%), Postives = 67/119 (56.30%), Query Frame = 1 
Query:   13 VVVIGGGYAGIEAAKGLDVRFDVTLVAGGEAFRHVIYGLRATALPEQTPKMLPPYDNLLKKGTVLKCSASKINAEESTVTLSTGDILPYDYLVLATGILHPKTGEICFITVKGAEDTSG 369
            VVVIGGGYAG+  AK LD    VTLV   E F H I  LRA   PE T     PYD LL +G V+   A +I+ +   V L+TG+ LPYD LV+ATG  +P+       T + A  + G
Sbjct:    6 VVVIGGGYAGVRLAKRLDTTARVTLVDRKEVFFHRIASLRAGVRPEWTVTPFIPYDRLLTRGRVVTGKAVRIDTDGREVQLATGERLPYDVLVIATGADYPEPARFSGTTAEEAAKSFG 124
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1544.4023.1 vs. uniprot
Match: UPI001C391B99 (FAD-dependent oxidoreductase n=1 Tax=Streptomyces corallincola TaxID=2851888 RepID=UPI001C391B99)

HSP 1 Score: 90.5 bits (223), Expect = 5.060e-19
Identity = 51/116 (43.97%), Postives = 71/116 (61.21%), Query Frame = 1 
Query:    7 QKVVVIGGGYAGIEAAKGLDVRFDVTLVAGGEAFRHVIYGLRATALPEQTPKMLPPYDNLLKKGTVLKCSASKINAEESTVTLSTGDILPYDYLVLATGILHPKTGEICFITVKGA 354
            ++VVVIGGGYAG++ A+ LD   DVT+V G +AF H +  LRA+  P+ T     PYD LL +G VL+  A+ I+  +  V L +G  LPYD LV+ATG  + +      +TV  A
Sbjct:    6 RRVVVIGGGYAGVKLARDLDEVADVTMVDGKDAFFHRVASLRASVDPDWTTAPFFPYDRLLARGRVLRDKATGIDTGDRLVLLRSGMRLPYDALVIATGADYQEPARFTGVTVDEA 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1544.4023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVU6_ECTSI1.730e-4767.21Pyr_redox_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KYH0_9PHAE2.510e-4771.96Pyr_redox_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6B3BWU7_9ACTN7.120e-2045.00FAD-dependent oxidoreductase n=3 Tax=unclassified ... [more]
UPI0004BF71F37.120e-2045.00FAD-dependent oxidoreductase n=3 Tax=Streptomyces ... [more]
UPI0019057A1A9.870e-2045.83FAD-dependent oxidoreductase n=1 Tax=Streptomyces ... [more]
UPI000D03F6A31.370e-1945.83FAD-dependent oxidoreductase n=2 Tax=Streptomyces ... [more]
UPI00178FAFFF1.900e-1953.47FAD-dependent oxidoreductase n=1 Tax=Streptomyces ... [more]
A0A3N4SJ04_9ACTN2.630e-1951.96NADH dehydrogenase FAD-containing subunit n=1 Tax=... [more]
A0A3S9HVI3_9ACTN2.630e-1945.38Oxidoreductase n=9 Tax=Actinomycetia TaxID=1760 Re... [more]
UPI001C391B995.060e-1943.97FAD-dependent oxidoreductase n=1 Tax=Streptomyces ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1544contigH-canaliculatus_F_contig1544:25483..25854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.0
Seed ortholog evalue3.5e-40
Seed eggNOG ortholog2880.D7FVU6
EggNOG free text desc.Oxidoreductase
EggNOG OGsCOG1252@1,KOG2495@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size372
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929280.7635765-CDS-H-canaliculatus_F_contig1544:25482..258541622929280.7635765-CDS-H-canaliculatus_F_contig1544:25482..25854Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1544 25483..25854 +
1696845748.9329646-CDS-H-canaliculatus_F_contig1544:25482..258541696845748.9329646-CDS-H-canaliculatus_F_contig1544:25482..25854Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1544 25483..25854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1544.4023.1prot_H-canaliculatus_F_contig1544.4023.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1544 25483..25854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1544.4023.1

>prot_H-canaliculatus_F_contig1544.4023.1 ID=prot_H-canaliculatus_F_contig1544.4023.1|Name=mRNA_H-canaliculatus_F_contig1544.4023.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=124bp
MSQKVVVIGGGYAGIEAAKGLDVRFDVTLVAGGEAFRHVIYGLRATALPE
QTPKMLPPYDNLLKKGTVLKCSASKINAEESTVTLSTGDILPYDYLVLAT
GILHPKTGEICFITVKGAEDTSGG
back to top

mRNA from alignment at H-canaliculatus_F_contig1544:25483..25854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1544.4023.1 ID=mRNA_H-canaliculatus_F_contig1544.4023.1|Name=mRNA_H-canaliculatus_F_contig1544.4023.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=372bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1544:25483..25854+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCCCAAAAGGTTGTCGTGATCGGGGGAGGGTACGCCGGGATCGAAGC
CGCGAAGGGCCTCGACGTCAGATTCGACGTGACCCTCGTCGCCGGCGGAG
AAGCGTTCAGACATGTCATCTACGGCCTGCGCGCGACGGCCCTACCGGAG
CAGACCCCCAAGATGCTCCCCCCTTACGACAATCTCCTCAAGAAGGGGAC
CGTCCTTAAGTGCAGCGCCAGCAAGATCAACGCCGAAGAGTCGACGGTGA
CTCTCAGCACCGGGGACATTCTGCCGTACGATTATTTGGTGCTTGCCACG
GGCATCCTGCACCCCAAGACCGGTGAGATTTGTTTCATTACTGTTAAAGG
GGCAGAGGATACCAGCGGCGGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1544:25483..25854+

>mRNA_H-canaliculatus_F_contig1544.4023.1 ID=mRNA_H-canaliculatus_F_contig1544.4023.1|Name=mRNA_H-canaliculatus_F_contig1544.4023.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=744bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1544:25483..25854+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCCCAAAAGGTTGTCGTGATCGGGGGAGGGTACGCCGGGATCGAAGC
CGCGAAGGGCCTCGACGTCAGATTCGACGTGACCCTCGTCGCCGGCGGAG
AAGCGTTCAGACATGTCATCTACGGCCTGCGCGCGACGGCCCTACCGGAG
CAGACCCCCAAGATGCTCCCCCCTTACGACAATCTCCTCAAGAAGGGGAC
CGTCCTTAAGTGCAGCGCCAGCAAGATCAACGCCGAAGAGTCGACGGTGA
CTCTCAGCACCGGGGACATTCTGCCGTACGATTATTTGGTGCTTGCCACG
GGCATCCTGCACCCCAAGACCGGTGAGATTTGTTTCATTACTGTTAAAGG
GGCAGAGGATACCAGCGGCGGAATGTCCCAAAAGGTTGTCGTGATCGGGG
GAGGGTACGCCGGGATCGAAGCCGCGAAGGGCCTCGACGTCAGATTCGAC
GTGACCCTCGTCGCCGGCGGAGAAGCGTTCAGACATGTCATCTACGGCCT
GCGCGCGACGGCCCTACCGGAGCAGACCCCCAAGATGCTCCCCCCTTACG
ACAATCTCCTCAAGAAGGGGACCGTCCTTAAGTGCAGCGCCAGCAAGATC
AACGCCGAAGAGTCGACGGTGACTCTCAGCACCGGGGACATTCTGCCGTA
CGATTATTTGGTGCTTGCCACGGGCATCCTGCACCCCAAGACCGGTGAGA
TTTGTTTCATTACTGTTAAAGGGGCAGAGGATACCAGCGGCGGA
back to top