mRNA_H-canaliculatus_F_contig1543.4014.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1543.4014.1
Unique NamemRNA_H-canaliculatus_F_contig1543.4014.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1543.4014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1543contigH-canaliculatus_F_contig1543:9041..10581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size224
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929279.580784-CDS-H-canaliculatus_F_contig1543:9040..92111622929279.580784-CDS-H-canaliculatus_F_contig1543:9040..9211Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1543 9041..9211 +
1696845748.4272478-CDS-H-canaliculatus_F_contig1543:9040..92111696845748.4272478-CDS-H-canaliculatus_F_contig1543:9040..9211Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1543 9041..9211 +
1622929279.5966482-CDS-H-canaliculatus_F_contig1543:10528..105791622929279.5966482-CDS-H-canaliculatus_F_contig1543:10528..10579Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1543 10529..10579 +
1696845748.4373465-CDS-H-canaliculatus_F_contig1543:10528..105791696845748.4373465-CDS-H-canaliculatus_F_contig1543:10528..10579Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1543 10529..10579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1543.4014.1prot_H-canaliculatus_F_contig1543.4014.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1543 9041..10579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1543.4014.1

>prot_H-canaliculatus_F_contig1543.4014.1 ID=prot_H-canaliculatus_F_contig1543.4014.1|Name=mRNA_H-canaliculatus_F_contig1543.4014.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=74bp
VVAPACTPLVALVAGGAGGSGGGSGDGDGNGKVMPKADIGRWLLSEDEAF
GDIAFMRVGLPKGVVVKSTQEKKE
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mRNA from alignment at H-canaliculatus_F_contig1543:9041..10581+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1543.4014.1 ID=mRNA_H-canaliculatus_F_contig1543.4014.1|Name=mRNA_H-canaliculatus_F_contig1543.4014.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1541bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1543:9041..10581+ (Hapterophycus canaliculatus Oshoro5f female)
GTGGTTGCCCCTGCGTGCACCCCTCTTGTTGCCTTGGTGGCGGGCGGGGC
CGGCGGTAGCGGCGGCGGCAGCGGCGACGGCGACGGCAACGGCAAGGTGA
TGCCTAAGGCGGACATCGGTCGGTGGCTCCTGTCGGAAGACGAAGCTTTC
GGGGACATCGCCTTCATGCGGGTGAGAGCGGGGTTTGAGAGCGGGGTTTG
CATGAAGCGCTTCGCTGCTAGGAAGCGTAGCGACCGTTTGGGTCCGGGGC
TGGGCTGGGCGCGGCCGGGCTTGGCTTCCGACAAAATGTGGGGAAGGTTC
TCCGAGATTTCTCCGAAAGCTCTAGAGTAGAACACCATCATCCCCTCCGC
GCGGGCCCTCCTGCTTTCTTGGCTGCACGTGCCTCGAGGCGCTAGGGAGG
GTTCCGAAGCAAGTGCCGGTGACCCTGCGTAAGCTCCGTAGGAGCAAAGG
GCGATGGCAGCTGTATTCTCTCTTCCGCGCTTCGCACGGCCGCGGCCGCA
CCCGGCCCGGGCGCGTGGATCTCAGGCAGTTATTCCGATTTTTCGACCGC
AAGGGTTGCAAGAAAGGGGGCAGATGGATGGAAAGAACGCAGCCAAGCGG
TCCTGACGTGTACGCGAGGGCAGGGCAGAAAGGCTGTGCGGAAGCCGTGT
CCAACAGCAGCACCGGGGATTGCTTGTCGTCCATGCTTTTGCATGGCTTG
GGGCGCACGCACTCTTCCGTATTTTTGTTTTTGTTGTCCTGCGTATTTTC
GAGCAAAACGAATCGCGAGTAGAGTTTCACGATGCTAGAGGCGTTACTCT
CGCGTGAACGTCGTCGAACAACACCACATTCCGCCCAGCGCGCGACTGAC
TTTTCCGGAGTTCGACGTGCCCGCGGCAGTCAGCATTTTCTGACAGCCCG
CTTTTTCCGTGCGGGCAATGTCTCTCGCTGGCGGAGGTTGTCGAGCTTGA
ATCGTAGTTCCAGATTCGAGTGTGTCGCCCCGTGCGATGTGCAGTAGCTA
GTGCACCGCATCCCCCGCAGCTGCTTGGCCGTGGAAGCCGCACAGCGGGT
ATCTCAGTATCACGAGCAATGGCCGCACCTCGCCTCAGTTGGCTCCTCCC
AGGGATCCCCCGCCCTTGTCGTCTCTCGACGGCTGAATCGGCACCGAACG
TGGAGATGCCCTAGTATCCATCGAGCCGCCCTAGGGGCGCTAAGATTCTC
CCCTTGCCTTGTGGGGCACTCTGCGTCAAATGAAAACTTTTTTGGTCTAA
GCCCCCTCTAGTAACGAAGGCCGGGGCACGATGTCGGATCGGACGTGAAA
GGGGCCCCGTCCCCTCGGTTGCTTCAACGGGGGCTGCGGGAAGAAGGGGG
TTGCGTAGGCTGAACCTTTTCAAGGCTTCAAAAGGAAGAAAAACGACATG
AACGAGAATTGGCGGCAAATCACAACCGCGTGATTGGGAGCAATGATAAC
AACACACACAGCACAACACACAACACACAACGTTGCAGGTTGGGTTGCCG
AAGGGAGTCGTCGTCAAGTCCACCCAGGAGAAGAAGGAAGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1543:9041..10581+

>mRNA_H-canaliculatus_F_contig1543.4014.1 ID=mRNA_H-canaliculatus_F_contig1543.4014.1|Name=mRNA_H-canaliculatus_F_contig1543.4014.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=444bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1543:9041..10581+ (Hapterophycus canaliculatus Oshoro5f female)
GTGGTTGCCCCTGCGTGCACCCCTCTTGTTGCCTTGGTGGCGGGCGGGGC
CGGCGGTAGCGGCGGCGGCAGCGGCGACGGCGACGGCAACGGCAAGGTGA
TGCCTAAGGCGGACATCGGTCGGTGGCTCCTGTCGGAAGACGAAGCTTTC
GGGGACATCGCCTTCATGCGGGTGGTTGCCCCTGCGTGCACCCCTCTTGT
TGCCTTGGTGGCGGGCGGGGCCGGCGGTAGCGGCGGCGGCAGCGGCGACG
GCGACGGCAACGGCAAGGTGATGCCTAAGGCGGACATCGGTCGGTGGCTC
CTGTCGGAAGACGAAGCTTTCGGGGACATCGCCTTCATGCGGGTTGGGTT
GCCGAAGGGAGTCGTCGTCAAGTCCACCCAGGAGAAGAAGGAAGTTGGGT
TGCCGAAGGGAGTCGTCGTCAAGTCCACCCAGGAGAAGAAGGAA
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