mRNA_H-canaliculatus_F_contig15417.4006.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15417.4006.1
Unique NamemRNA_H-canaliculatus_F_contig15417.4006.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15417.4006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15417contigH-canaliculatus_F_contig15417:1331..1826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size496
Cds size324
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929278.6314385-UTR-H-canaliculatus_F_contig15417:1330..15021622929278.6314385-UTR-H-canaliculatus_F_contig15417:1330..1502Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15417 1331..1502 +
1696845747.93188-UTR-H-canaliculatus_F_contig15417:1330..15021696845747.93188-UTR-H-canaliculatus_F_contig15417:1330..1502Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15417 1331..1502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929278.6489422-CDS-H-canaliculatus_F_contig15417:1502..18261622929278.6489422-CDS-H-canaliculatus_F_contig15417:1502..1826Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15417 1503..1826 +
1696845747.9403234-CDS-H-canaliculatus_F_contig15417:1502..18261696845747.9403234-CDS-H-canaliculatus_F_contig15417:1502..1826Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15417 1503..1826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15417.4006.1prot_H-canaliculatus_F_contig15417.4006.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15417 1503..1826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15417.4006.1

>prot_H-canaliculatus_F_contig15417.4006.1 ID=prot_H-canaliculatus_F_contig15417.4006.1|Name=mRNA_H-canaliculatus_F_contig15417.4006.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=108bp
MMLFPSTKGLEVCLQQSGNLIPRLFPTNRPALSLRFLESGTSRVLLALAK
MSAIDVSIARASQQYTTNKHIHLSVSIMNHQGQKRGQIHPMCGSYQIRFH
QLQILAY*
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mRNA from alignment at H-canaliculatus_F_contig15417:1331..1826+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15417.4006.1 ID=mRNA_H-canaliculatus_F_contig15417.4006.1|Name=mRNA_H-canaliculatus_F_contig15417.4006.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=496bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15417:1331..1826+ (Hapterophycus canaliculatus Oshoro5f female)
ACCACACCTCCAATTAGTATCGAAGTACCGAACATCGGCGCTTCTCCTCT
CCCGTCTATGAATCCCACATTTCTTCCGCTGTATCCACCCAAGTCTAAAA
CGTGCGCAAGCCAAAACAGACCAGGCTTGGAATCACTCAAATGCAAGAAA
CACCCCAGATGCCAGCTCAGCGATGATGTTGTTCCCTTCAACGAAAGGAC
TTGAAGTGTGTCTGCAACAAAGCGGAAACTTGATTCCTCGACTCTTTCCC
ACCAACCGACCAGCCCTCTCTCTACGATTCCTCGAGTCAGGCACCTCGCG
CGTCCTCCTCGCACTTGCAAAAATGTCGGCGATAGACGTTTCCATCGCGC
GTGCTTCTCAACAATACACAACCAACAAACATATACATCTAAGTGTGTCA
ATCATGAACCATCAAGGGCAGAAACGCGGCCAGATACATCCTATGTGTGG
ATCCTATCAAATTCGATTCCATCAGCTTCAAATACTGGCTTATTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15417:1331..1826+

>mRNA_H-canaliculatus_F_contig15417.4006.1 ID=mRNA_H-canaliculatus_F_contig15417.4006.1|Name=mRNA_H-canaliculatus_F_contig15417.4006.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=648bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15417:1331..1826+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATGTTGTTCCCTTCAACGAAAGGACTTGAAGTGTGTCTGCAACAAAG
CGGAAACTTGATTCCTCGACTCTTTCCCACCAACCGACCAGCCCTCTCTC
TACGATTCCTCGAGTCAGGCACCTCGCGCGTCCTCCTCGCACTTGCAAAA
ATGTCGGCGATAGACGTTTCCATCGCGCGTGCTTCTCAACAATACACAAC
CAACAAACATATACATCTAAGTGTGTCAATCATGAACCATCAAGGGCAGA
AACGCGGCCAGATACATCCTATGTGTGGATCCTATCAAATTCGATTCCAT
CAGCTTCAAATACTGGCTTATTGAATGATGTTGTTCCCTTCAACGAAAGG
ACTTGAAGTGTGTCTGCAACAAAGCGGAAACTTGATTCCTCGACTCTTTC
CCACCAACCGACCAGCCCTCTCTCTACGATTCCTCGAGTCAGGCACCTCG
CGCGTCCTCCTCGCACTTGCAAAAATGTCGGCGATAGACGTTTCCATCGC
GCGTGCTTCTCAACAATACACAACCAACAAACATATACATCTAAGTGTGT
CAATCATGAACCATCAAGGGCAGAAACGCGGCCAGATACATCCTATGTGT
GGATCCTATCAAATTCGATTCCATCAGCTTCAAATACTGGCTTATTGA
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