mRNA_H-canaliculatus_F_contig15415.4005.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15415.4005.1
Unique NamemRNA_H-canaliculatus_F_contig15415.4005.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15415.4005.1 vs. uniprot
Match: D8LQR5_ECTSI (Similar to retinoic acid induced 17, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR5_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 5.140e-46
Identity = 81/105 (77.14%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:    1 QEALRRVKRSFKGSLDLNSHLGGESSXXXXXXXXXXXXXXXXXLMATATRLSLRCPLGLVPITCPGRGRNCKHLQCFDLTTFLNYNKDCAGAAWKCGVCNLPIKP 315
            QEALRRVKRSFKG LDLNSHL G+SS                 LMATATRLSLRCPLGLVPITCPGRGR CKHLQCFDL TFL++NKDCAGAAWKCGVCNLPIKP
Sbjct:  274 QEALRRVKRSFKGCLDLNSHLEGDSSEDEQIGKGAGGDDSDDDLMATATRLSLRCPLGLVPITCPGRGRYCKHLQCFDLNTFLSFNKDCAGAAWKCGVCNLPIKP 378
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BLAST of mRNA_H-canaliculatus_F_contig15415.4005.1 vs. uniprot
Match: A0A6H5KI42_9PHAE (SP-RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI42_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 2.820e-45
Identity = 80/105 (76.19%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:    1 QEALRRVKRSFKGSLDLNSHLGGESSXXXXXXXXXXXXXXXXXLMATATRLSLRCPLGLVPITCPGRGRNCKHLQCFDLTTFLNYNKDCAGAAWKCGVCNLPIKP 315
            +EALRRVKRSFKG LDLNSHL G+SS                 LMATATRLSLRCPLGLVPITCPGRGR CKHLQCFDL TFL++NKDCAGAAWKCGVCNLPIKP
Sbjct:  324 KEALRRVKRSFKGCLDLNSHLEGDSSEDEQIGKGAGGDDSDDDLMATATRLSLRCPLGLVPITCPGRGRYCKHLQCFDLNTFLSFNKDCAGAAWKCGVCNLPIKP 428
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BLAST of mRNA_H-canaliculatus_F_contig15415.4005.1 vs. uniprot
Match: W7TGK7_9STRA (Sumo ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGK7_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.500e-20
Identity = 49/104 (47.12%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    1 QEALRRVKRSFKG-SLDLNSHLGGESSXXXXXXXXXXXXXXXXXLMATATRLSLRCPLGLVPITCPGRGRNCKHLQCFDLTTFLNYNKDCAGAAWKCGVCNLPI 309
            +E+L R+++SF+G S+D ++  G                     LMAT TRLSLRCPLG+ PI  P RG +C HLQCFDL TFL YN+  A A W+CGVCN  +
Sbjct:  414 EESLERIRQSFRGCSVDSDTEDG--------------------ELMATVTRLSLRCPLGMTPIRIPARGTDCHHLQCFDLDTFLRYNERGAAAGWRCGVCNTVL 497
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BLAST of mRNA_H-canaliculatus_F_contig15415.4005.1 vs. uniprot
Match: A0A7S2FT40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FT40_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.460e-16
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:  136 ATATRLSLRCPLGLVPITCPGRGRNCKHLQCFDLTTFLNYNKDCAGAAWKCGVCNLPI 309
            A +TRLS+RCP+GL PI  P RGR C HLQCFDL TFL  NK+   A W+CGVC+  +
Sbjct:   12 AASTRLSVRCPIGLGPIGIPVRGRGCTHLQCFDLVTFLQMNKNYGVARWRCGVCSKTL 69
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BLAST of mRNA_H-canaliculatus_F_contig15415.4005.1 vs. uniprot
Match: A0A835YI91_9STRA (SP-RING-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI91_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.780e-16
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:  130 LMATATRLSLRCPLGLVPITCPGRGRNCKHLQCFDLTTFLNYNK 261
            LMAT+TRLSLRCPLGLVPI  P RGR C HLQCFD+ TFL++N+
Sbjct:   11 LMATSTRLSLRCPLGLVPIAVPARGRGCAHLQCFDMATFLSFNE 54
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BLAST of mRNA_H-canaliculatus_F_contig15415.4005.1 vs. uniprot
Match: A0A485LNC0_9STRA (Aste57867_23638 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNC0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.010e-14
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:  130 LMATATRLSLRCPLGLVPITCPGRGRNCKHLQCFDLTTFLNYNKDCAGAAWKCGVCN 300
            ++AT T LSLRCPLGL  I  P RG +CKHLQCFDL TFL +N+     AWKC VC+
Sbjct:  382 IVATCTMLSLRCPLGLCVIELPARGIHCKHLQCFDLKTFLMFNRSARSRAWKCIVCH 438
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BLAST of mRNA_H-canaliculatus_F_contig15415.4005.1 vs. uniprot
Match: A0A8K1C5F5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5F5_PYTOL)

HSP 1 Score: 76.6 bits (187), Expect = 4.100e-14
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:  130 LMATATRLSLRCPLGLVPITCPGRGRNCKHLQCFDLTTFLNYNKDCAGAAWKCGVCNLPIK 312
            ++AT T LS+RCPLGL  IT P RG +CKHLQCFDL TFL +NK     A++C VC+  I+
Sbjct:  411 IIATCTMLSVRCPLGLCVITLPARGLHCKHLQCFDLKTFLQFNKKARSRAYRCTVCHNFIR 471
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BLAST of mRNA_H-canaliculatus_F_contig15415.4005.1 vs. uniprot
Match: A0A3M6VVF6_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VVF6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 5.750e-14
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:  130 LMATATRLSLRCPLGLVPITCPGRGRNCKHLQCFDLTTFLNYNKDCAGAAWKCGVCNLPIK 312
            ++AT T LS+RCPLGL  I  P RG +CKHLQCFDL TFL ++K     AW+C VC+  IK
Sbjct:  395 VVATVTMLSVRCPLGLCVINLPARGLHCKHLQCFDLRTFLLFSKKARSKAWRCTVCHQFIK 455
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BLAST of mRNA_H-canaliculatus_F_contig15415.4005.1 vs. uniprot
Match: A0A2P4X7F3_9STRA (SUMO ligase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X7F3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.010e-13
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:  130 LMATATRLSLRCPLGLVPITCPGRGRNCKHLQCFDLTTFLNYNKDCAGAAWKCGVCNLPIK 312
            ++AT T LS+RCPLGL  I  P RG +CKHLQCFDL TF+ ++K     AW+C VC+  IK
Sbjct:  195 VVATVTMLSVRCPLGLCVINLPARGLHCKHLQCFDLKTFMLFSKKARSKAWRCTVCHQFIK 255
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BLAST of mRNA_H-canaliculatus_F_contig15415.4005.1 vs. uniprot
Match: W2PCS1_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PCS1_PHYPN)

HSP 1 Score: 75.5 bits (184), Expect = 1.030e-13
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:  130 LMATATRLSLRCPLGLVPITCPGRGRNCKHLQCFDLTTFLNYNKDCAGAAWKCGVCNLPIK 312
            ++AT T LS+RCPLGL  I  P RG +CKHLQCFDL TF+ ++K     AW+C VC+  IK
Sbjct:  401 VVATVTMLSVRCPLGLCVINLPARGIHCKHLQCFDLKTFMMFSKKARSKAWRCTVCHRFIK 461
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15415.4005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQR5_ECTSI5.140e-4677.14Similar to retinoic acid induced 17, partial n=1 T... [more]
A0A6H5KI42_9PHAE2.820e-4576.19SP-RING-type domain-containing protein n=1 Tax=Ect... [more]
W7TGK7_9STRA2.500e-2047.12Sumo ligase n=2 Tax=Monodopsidaceae TaxID=425072 R... [more]
A0A7S2FT40_9STRA1.460e-1660.34Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A835YI91_9STRA3.780e-1675.00SP-RING-type domain-containing protein (Fragment) ... [more]
A0A485LNC0_9STRA3.010e-1461.40Aste57867_23638 protein n=1 Tax=Aphanomyces stella... [more]
A0A8K1C5F5_PYTOL4.100e-1457.38Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3M6VVF6_9STRA5.750e-1457.38Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A2P4X7F3_9STRA1.010e-1355.74SUMO ligase n=1 Tax=Phytophthora palmivora var. pa... [more]
W2PCS1_PHYPN1.030e-1355.74Uncharacterized protein n=1 Tax=Phytophthora paras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15415contigH-canaliculatus_F_contig15415:1295..2207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue2.5e-39
Seed eggNOG ortholog2880.D8LQR5
Preferred nameSIZ1
KEGG koko:K04706,ko:K10706,ko:K16063,ko:K22403
KEGG Pathwayko04120,ko04630,ko05160,map04120,map04630,map05160
GOsGO:0000003,GO:0000902,GO:0001101,GO:0002682,GO:0002683,GO:0002831,GO:0002832,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006807,GO:0006935,GO:0006950,GO:0007154,GO:0007275,GO:0008150,GO:0008152,GO:0009266,GO:0009267,GO:0009408,GO:0009409,GO:0009414,GO:0009415,GO:0009553,GO:0009593,GO:0009605,GO:0009628,GO:0009653,GO:0009787,GO:0009791,GO:0009826,GO:0009856,GO:0009908,GO:0009909,GO:0009910,GO:0009966,GO:0009987,GO:0009991,GO:0010035,GO:0010112,GO:0010113,GO:0010183,GO:0010247,GO:0010286,GO:0010337,GO:0010565,GO:0010646,GO:0010817,GO:0016036,GO:0016043,GO:0016049,GO:0016740,GO:0016925,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0019787,GO:0019789,GO:0022414,GO:0023051,GO:0031323,GO:0031347,GO:0031348,GO:0031667,GO:0031668,GO:0031669,GO:0032101,GO:0032102,GO:0032350,GO:0032446,GO:0032501,GO:0032502,GO:0032989,GO:0033554,GO:0035670,GO:0036211,GO:0040007,GO:0040008,GO:0040011,GO:0042221,GO:0042330,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043900,GO:0043901,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0044706,GO:0045088,GO:0045824,GO:0048229,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048519,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048589,GO:0048608,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0048868,GO:0048869,GO:0050776,GO:0050777,GO:0050789,GO:0050793,GO:0050794,GO:0050826,GO:0050896,GO:0050918,GO:0051093,GO:0051171,GO:0051239,GO:0051241,GO:0051301,GO:0051606,GO:0051704,GO:0051716,GO:0060560,GO:0061458,GO:0061659,GO:0061665,GO:0062012,GO:0065007,GO:0065008,GO:0070647,GO:0071496,GO:0071704,GO:0071840,GO:0080134,GO:0090352,GO:0090567,GO:0099402,GO:0140096,GO:1901419,GO:1901564,GO:1901700,GO:1903314,GO:1905957,GO:2000026,GO:2000070,GO:2000241,GO:2000242
EggNOG free text desc.SUMO transferase activity
EggNOG OGsKOG2169@1,KOG2169@2759
Ec32 ortholog descriptionZinc finger, MIZ-type
Ec32 orthologEc-24_002000.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko04121,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929278.549532-CDS-H-canaliculatus_F_contig15415:1294..14711622929278.549532-CDS-H-canaliculatus_F_contig15415:1294..1471Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15415 1295..1471 +
1696845747.9065142-CDS-H-canaliculatus_F_contig15415:1294..14711696845747.9065142-CDS-H-canaliculatus_F_contig15415:1294..1471Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15415 1295..1471 +
1622929278.572356-CDS-H-canaliculatus_F_contig15415:2069..22071622929278.572356-CDS-H-canaliculatus_F_contig15415:2069..2207Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15415 2070..2207 +
1696845747.923269-CDS-H-canaliculatus_F_contig15415:2069..22071696845747.923269-CDS-H-canaliculatus_F_contig15415:2069..2207Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15415 2070..2207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15415.4005.1prot_H-canaliculatus_F_contig15415.4005.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15415 1295..2207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15415.4005.1

>prot_H-canaliculatus_F_contig15415.4005.1 ID=prot_H-canaliculatus_F_contig15415.4005.1|Name=mRNA_H-canaliculatus_F_contig15415.4005.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=105bp
QEALRRVKRSFKGSLDLNSHLGGESSEEDEAGKGGGDDDSDDDLMATATR
LSLRCPLGLVPITCPGRGRNCKHLQCFDLTTFLNYNKDCAGAAWKCGVCN
LPIKP
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mRNA from alignment at H-canaliculatus_F_contig15415:1295..2207+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15415.4005.1 ID=mRNA_H-canaliculatus_F_contig15415.4005.1|Name=mRNA_H-canaliculatus_F_contig15415.4005.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=913bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15415:1295..2207+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGAGGCACTGCGGCGAGTGAAGCGGTCGTTCAAGGGTAGCCTCGACCT
CAACAGCCACCTCGGGGGCGAGTCGTCCGAGGAAGACGAGGCGGGGAAGG
GGGGCGGCGACGACGACAGCGACGACGACCTTATGGCCACGGCCACCCGG
CTGTCCCTCCGATGCCCTCTCGGCCTGGTGAGTTGTCAGATGTCGTCTTG
GTGTGCTTATCGTGGAGTGCTGGAGTGCTTTCATGCTTTCTCTTGTTGCT
GCTGCTGGTGCTGCTGCTACTGTTGTTGTTGTTGTTGTTGTTGTTGGTGG
TGGTGGTGGTGGTGGTGTTGGTGGTTCCATCGTTGTTGTCGTTGTTGTTG
TTGTTGTTGTTGTTGGTGCTGGTGGTTCCATCGTGCGCGAAATGTGTAGC
CCGGTGGCGGAGGCGAGGCGCTCGACGAGACAAACACGCAGGGTAGATAG
AACCCACCGGCAAAAACGGCCAGCTCCCCGACAGCGGCGTTCCACGCACC
AGAAAAAATCTTATCTAGTTCCGTCAGGTTAAGCCCCCCCCCCCCATCGC
TTATGTCTCTGTCTCTGTCTCTGTCTTTGTCTCTGTCTCTGTCTCTGTCT
GTCTGTCTGTCTGTCTGTCTATCTGTCTGTCTGTCTTGTCTCTCTGTCTG
TCTCTCTGTCTCTGTCTCTTGTCTCTGTCCGTCTCTCTGTCTCTCTCTCT
GTCTCTCTGTCTCTCTGTCTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCGTAAAGGTCCCGATCACTTGCCCGGGGAGGG
GGCGCAACTGCAAGCACCTCCAGTGCTTCGACCTCACCACGTTCCTCAAC
TACAACAAGGACTGCGCGGGAGCCGCCTGGAAATGCGGGGTGTGCAACTT
GCCCATCAAACCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15415:1295..2207+

>mRNA_H-canaliculatus_F_contig15415.4005.1 ID=mRNA_H-canaliculatus_F_contig15415.4005.1|Name=mRNA_H-canaliculatus_F_contig15415.4005.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=630bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15415:1295..2207+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGAGGCACTGCGGCGAGTGAAGCGGTCGTTCAAGGGTAGCCTCGACCT
CAACAGCCACCTCGGGGGCGAGTCGTCCGAGGAAGACGAGGCGGGGAAGG
GGGGCGGCGACGACGACAGCGACGACGACCTTATGGCCACGGCCACCCGG
CTGTCCCTCCGATGCCCTCTCGGCCTGCAGGAGGCACTGCGGCGAGTGAA
GCGGTCGTTCAAGGGTAGCCTCGACCTCAACAGCCACCTCGGGGGCGAGT
CGTCCGAGGAAGACGAGGCGGGGAAGGGGGGCGGCGACGACGACAGCGAC
GACGACCTTATGGCCACGGCCACCCGGCTGTCCCTCCGATGCCCTCTCGG
CCTGGTCCCGATCACTTGCCCGGGGAGGGGGCGCAACTGCAAGCACCTCC
AGTGCTTCGACCTCACCACGTTCCTCAACTACAACAAGGACTGCGCGGGA
GCCGCCTGGAAATGCGGGGTGTGCAACTTGCCCATCAAACCAGTCCCGAT
CACTTGCCCGGGGAGGGGGCGCAACTGCAAGCACCTCCAGTGCTTCGACC
TCACCACGTTCCTCAACTACAACAAGGACTGCGCGGGAGCCGCCTGGAAA
TGCGGGGTGTGCAACTTGCCCATCAAACCA
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