mRNA_H-canaliculatus_F_contig1540.3996.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1540.3996.1 vs. uniprot
Match: D7FNM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM3_ECTSI) HSP 1 Score: 196 bits (498), Expect = 3.670e-53 Identity = 146/323 (45.20%), Postives = 186/323 (57.59%), Query Frame = 1
Query: 16 SDDGGNHNQEPRTRLMLTSVGRVVRVDHDPRG---LMVPTEHELKMILYDQTDAGNRTH---EREAIDYVALNANRRPRRGTGKYLVENRVPTERDDN-----DYHRRHAWRQRRGNKLNPCLHRK--KPSPRD-ESGEEEDVTTFLDLFSTSGMATRHPAPR-------SSLPTSSCRE-ATSGRQTRETEDVDHHDTRATMEISKPLAKIDLYNILARAPPAELGGVASHRSRGAIGINGDPTARSKKASRKNMRKKGSSRSVCKV-----DERQTRQASRAVDSMPGGVFGGYMARDPLGDDVVMLQTKVQEELRRIKGG 903
S D + + +PRT+ LT GRVVRV+HDP +VPTE ELK ILYDQTDA NR + R+ ID+VAL+ANRRPRR K VEN T + N + R R+ RG K + CL K +PSP+ +SGEEEDV+ FLD FS S M +HPA S PTS C + Q R+ E V T+ TME+SKPLAKIDLY+ILA+APP ASHR IG + DPT +K +++ R++GS R + DER + + ++ P GGY+ RDPLGD+V L K+QE LR I GG
Sbjct: 4 SFDVNHQDHKPRTKYFLTVGGRVVRVNHDPDAGNRQIVPTEDELKTILYDQTDARNRGNGHRRRDNIDFVALHANRRPRRKGSKNGVENNQRTYENSNSPVGVNGEDRPHIRRERGIKSDRCLRPKANRPSPKHHDSGEEEDVSLFLDSFSASEMPGQHPAAAVQTAVTLQSPPTSLCLDDGVLEGQARKAEAVVADTTQTTMEMSKPLAKIDLYSILAKAPPVAPRSTASHRPVDGIGCSVDPTMSNKAGMKRHKREQGSLRRLASSVVVGGDERPAFETALRLN--PREEVGGYLKRDPLGDEVAELTAKLQESLRSIGGG 324 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1540.3996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1540.3996.1 >prot_H-canaliculatus_F_contig1540.3996.1 ID=prot_H-canaliculatus_F_contig1540.3996.1|Name=mRNA_H-canaliculatus_F_contig1540.3996.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=653bp MFKPVSDDGGNHNQEPRTRLMLTSVGRVVRVDHDPRGLMVPTEHELKMILback to top mRNA from alignment at H-canaliculatus_F_contig1540:10982..14854+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1540.3996.1 ID=mRNA_H-canaliculatus_F_contig1540.3996.1|Name=mRNA_H-canaliculatus_F_contig1540.3996.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3873bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1540:10982..14854+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1540:10982..14854+ >mRNA_H-canaliculatus_F_contig1540.3996.1 ID=mRNA_H-canaliculatus_F_contig1540.3996.1|Name=mRNA_H-canaliculatus_F_contig1540.3996.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3918bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1540:10982..14854+ (Hapterophycus canaliculatus Oshoro5f female)back to top |