mRNA_H-canaliculatus_F_contig154.3989.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig154.3989.1 vs. uniprot
Match: D7FV86_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV86_ECTSI) HSP 1 Score: 679 bits (1752), Expect = 1.510e-237 Identity = 369/527 (70.02%), Postives = 417/527 (79.13%), Query Frame = 1
Query: 142 SGRGKESTSKNALSFLQRSDRSTSS--LPSPPTSPWPVGFVPPHGVE--RAGAWIAQAGNGPTPRLPRTSALAFLERAPMRTSGSSTCLVSGAGAEDGLGTLSGGVMAAGSNRGGFLPQPHEGDDSGSECSEEKEDSDICPSMLFSCFPCFYCFRSKQRRPAHFLDGRLDIGNSSKRDPQSVSSLSTPLLSDRPPSPEDFPKDVKLIEVEVESARNLPVGERVNMADLAGTYAILRMTPVQEGVGEQTTQTSVATRPINPSWGGRETFTFFVTHTTNSKAFLALQLLYRPLRPPXXXXXXXXX-SLRRGSSESSVASVPSGSRPGDVVIGEGFVDLLALFPAMNGKHTPGGLTGNSRRVAVPMREPEGKRRTRCSVMLGLRCRRVNETIDTHEDRLYEYERWTPLAGWNTAGKRRAGKWGTLDGSALSDTFADVAPPARDGAEVVLPWCPFGGWEYSREDMVPPVAGTIGRD----GQRDDAPAAPSSAAQEWENFAVAQKGAVWMEGYVQGYQAVRRRLWRRVTAA 1695
S RG+ S NALSFL+RSDRST S + + T+PWPVGFVPP G + R W TP LPRTSALAFLERAP R G++ +V GAGAEDGLGTLSGG++AAG++RGGFLP+P+ D+GSECS+ +EDSDICPSML+SCFPCF R +RRPA LDG L NS KR+ ++ SLSTPLL+++PPSP +FP DVKLIEVEVESARNLP+GERVNMADLAGTYAILR+TPVQEGVGEQ QTS+ATRP+NPSWGGRETFTFFVT SKAFL+LQLLYRPLRPP LRRG+SE+S+ASV SGSR GDV I EGFVDLL LF ++G +TPG + GN+RRVAVPMREP+GKRRTRCSVMLGLRCRRVNETIDT EDRLYEYERWT +AGW+TAGK+RAGKW TLDGS LSD FADVAP + EVVLPWCPFGGWEYSR + P AG G G+RD+ APS AQEWENFAVAQKGAVWMEGYVQG QAVRRRLWRRVTAA
Sbjct: 88 SSRGRSS---NALSFLERSDRSTDSPTVAAATTNPWPVGFVPPQGTKSNRTTGW----SQSYTPYLPRTSALAFLERAPGRARGNN--IVGGAGAEDGLGTLSGGMVAAGADRGGFLPRPY---DTGSECSDAEEDSDICPSMLYSCFPCFNWSRRGKRRPADLLDGGL--ANSVKRESRAQLSLSTPLLTEQPPSPTNFPTDVKLIEVEVESARNLPLGERVNMADLAGTYAILRITPVQEGVGEQVNQTSLATRPVNPSWGGRETFTFFVTDVAGSKAFLSLQLLYRPLRPPPAPQPLQPPLPLRRGASEASLASVSSGSRHGDVTIAEGFVDLLGLFSLVDGTYTPGTMKGNARRVAVPMREPKGKRRTRCSVMLGLRCRRVNETIDTREDRLYEYERWTRVAGWSTAGKKRAGKWSTLDGSVLSDNFADVAPGVGEDTEVVLPWCPFGGWEYSRGEETPASAGNTGTSEAGGGRRDEF--APSLGAQEWENFAVAQKGAVWMEGYVQGDQAVRRRLWRRVTAA 598 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig154.3989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig154.3989.1 >prot_H-canaliculatus_F_contig154.3989.1 ID=prot_H-canaliculatus_F_contig154.3989.1|Name=mRNA_H-canaliculatus_F_contig154.3989.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=528bp MSTTSSSGRGKESTSKNALSFLQRSDRSTSSLPSPPTSPWPVGFVPPHGVback to top mRNA from alignment at H-canaliculatus_F_contig154:2..10683- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig154.3989.1 ID=mRNA_H-canaliculatus_F_contig154.3989.1|Name=mRNA_H-canaliculatus_F_contig154.3989.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=10682bp|location=Sequence derived from alignment at H-canaliculatus_F_contig154:2..10683- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig154:2..10683- >mRNA_H-canaliculatus_F_contig154.3989.1 ID=mRNA_H-canaliculatus_F_contig154.3989.1|Name=mRNA_H-canaliculatus_F_contig154.3989.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3168bp|location=Sequence derived from alignment at H-canaliculatus_F_contig154:2..10683- (Hapterophycus canaliculatus Oshoro5f female)back to top |