mRNA_H-canaliculatus_F_contig15390.3987.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15390.3987.1
Unique NamemRNA_H-canaliculatus_F_contig15390.3987.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15390.3987.1 vs. uniprot
Match: A8DUN7_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A8DUN7_NEMVE)

HSP 1 Score: 74.3 bits (181), Expect = 1.310e-16
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 RKTKNEAYNTGYSQAVTHPSTNPARQGLTSVIGREPVLSLWYGRRRGN 144
            RK K  AY+T YS+AVTHPSTN A   LTSVIGREPVLS WYGRRR N
Sbjct:    1 RKQKGNAYSTRYSEAVTHPSTNRALLSLTSVIGREPVLSQWYGRRRQN 48
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BLAST of mRNA_H-canaliculatus_F_contig15390.3987.1 vs. uniprot
Match: A7TCN0_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7TCN0_NEMVE)

HSP 1 Score: 71.6 bits (174), Expect = 1.330e-15
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 RKTKNEAYNTGYSQAVTHPSTNPARQGLTSVIGREPVLSLWYGRRR 138
            +K K  AY+T YS+AVTHPSTN A+  LTSVIGREPV S WYGRRR
Sbjct:    2 KKMKRNAYSTRYSKAVTHPSTNRAQSSLTSVIGREPVFSRWYGRRR 47
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BLAST of mRNA_H-canaliculatus_F_contig15390.3987.1 vs. uniprot
Match: V3ZPZ0_LOTGI (Uncharacterized protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZPZ0_LOTGI)

HSP 1 Score: 70.9 bits (172), Expect = 5.320e-15
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 3 
Query:   12 K*SLQHGVFPGGHPSKY*PRPTGLNFGDRTRTGAFPVVW 128
            K +LQH VFPGGHPSKY P PT LNF DRTRTGAF VVW
Sbjct:   43 KRNLQHSVFPGGHPSKYQPSPTLLNFSDRTRTGAFNVVW 81
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BLAST of mRNA_H-canaliculatus_F_contig15390.3987.1 vs. uniprot
Match: A0A8K0P260_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0P260_LADFU)

HSP 1 Score: 67.8 bits (164), Expect = 1.460e-13
Identity = 29/35 (82.86%), Postives = 29/35 (82.86%), Query Frame = 3 
Query:   24 QHGVFPGGHPSKY*PRPTGLNFGDRTRTGAFPVVW 128
            QH VFPGGHPSKY P PT LNFGDRTRTG F VVW
Sbjct:    6 QHPVFPGGHPSKYYPGPTMLNFGDRTRTGVFIVVW 40
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BLAST of mRNA_H-canaliculatus_F_contig15390.3987.1 vs. uniprot
Match: A0A815TN45_ADIRI (Hypothetical protein (Fragment) n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815TN45_ADIRI)

HSP 1 Score: 62.0 bits (149), Expect = 7.960e-12
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   16 EAYNTGYSQAVTHPSTNPARQGLTSVIGREPVLSLWYG 129
            +AY+T YSQAVTHPSTN AR+ LTSVIGRE V S WYG
Sbjct:   12 KAYDTRYSQAVTHPSTNRARRCLTSVIGRELVYSTWYG 49
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BLAST of mRNA_H-canaliculatus_F_contig15390.3987.1 vs. uniprot
Match: V3ZZI7_LOTGI (Uncharacterized protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZZI7_LOTGI)

HSP 1 Score: 61.6 bits (148), Expect = 1.210e-11
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   22 YNTGYSQAVTHPSTNPARQGLTSVIGREPVLSLWYGRR 135
            Y+T  SQAVTHPSTN AR+ LTSVIGRE VLS WYGRR
Sbjct:   15 YSTRCSQAVTHPSTNRARRCLTSVIGRELVLSTWYGRR 52
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BLAST of mRNA_H-canaliculatus_F_contig15390.3987.1 vs. uniprot
Match: A0A8K0P459_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0P459_LADFU)

HSP 1 Score: 62.0 bits (149), Expect = 1.290e-11
Identity = 27/34 (79.41%), Postives = 27/34 (79.41%), Query Frame = 3 
Query:   24 QHGVFPGGHPSKY*PRPTGLNFGDRTRTGAFPVV 125
            QH VFPGGHPSKY P PT LNFGDRTRTG F V 
Sbjct:    6 QHPVFPGGHPSKYYPGPTMLNFGDRTRTGVFIVA 39
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BLAST of mRNA_H-canaliculatus_F_contig15390.3987.1 vs. uniprot
Match: V4AYH2_LOTGI (Uncharacterized protein (Fragment) n=3 Tax=Lottia gigantea TaxID=225164 RepID=V4AYH2_LOTGI)

HSP 1 Score: 61.6 bits (148), Expect = 2.050e-11
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   22 YNTGYSQAVTHPSTNPARQGLTSVIGREPVLSLWYGRR 135
            Y+T  SQAVTHPSTN AR+ LTSVIGRE VLS WYGRR
Sbjct:   33 YSTWCSQAVTHPSTNRARRCLTSVIGRELVLSTWYGRR 70
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BLAST of mRNA_H-canaliculatus_F_contig15390.3987.1 vs. uniprot
Match: A0A815FGA7_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815FGA7_ADIRI)

HSP 1 Score: 62.0 bits (149), Expect = 2.090e-11
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   16 EAYNTGYSQAVTHPSTNPARQGLTSVIGREPVLSLWYG 129
            +AY+T YSQAVTHPSTN AR+ LTSVIGRE V S WYG
Sbjct:   32 KAYDTRYSQAVTHPSTNRARRCLTSVIGRELVYSTWYG 69
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BLAST of mRNA_H-canaliculatus_F_contig15390.3987.1 vs. uniprot
Match: V4AUQ9_LOTGI (Uncharacterized protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AUQ9_LOTGI)

HSP 1 Score: 62.0 bits (149), Expect = 2.310e-11
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   19 AYNTGYSQAVTHPSTNPARQGLTSVIGREPVLSLWYGRR 135
            AY+T  SQAVTHPSTN AR+ LTSVIGRE VLS W+GRR
Sbjct:   52 AYSTRCSQAVTHPSTNRARRWLTSVIGRELVLSTWFGRR 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15390.3987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A8DUN7_NEMVE1.310e-1675.00Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]
A7TCN0_NEMVE1.330e-1571.74Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]
V3ZPZ0_LOTGI5.320e-1579.49Uncharacterized protein (Fragment) n=1 Tax=Lottia ... [more]
A0A8K0P260_LADFU1.460e-1382.86Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A815TN45_ADIRI7.960e-1276.32Hypothetical protein (Fragment) n=1 Tax=Adineta ri... [more]
V3ZZI7_LOTGI1.210e-1178.95Uncharacterized protein (Fragment) n=1 Tax=Lottia ... [more]
A0A8K0P459_LADFU1.290e-1179.41Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
V4AYH2_LOTGI2.050e-1178.95Uncharacterized protein (Fragment) n=3 Tax=Lottia ... [more]
A0A815FGA7_ADIRI2.090e-1176.32Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]
V4AUQ9_LOTGI2.310e-1176.92Uncharacterized protein (Fragment) n=1 Tax=Lottia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15390contigH-canaliculatus_F_contig15390:1877..2020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929276.262892-CDS-H-canaliculatus_F_contig15390:1876..20201622929276.262892-CDS-H-canaliculatus_F_contig15390:1876..2020Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15390 1877..2020 -
1696845746.6956725-CDS-H-canaliculatus_F_contig15390:1876..20201696845746.6956725-CDS-H-canaliculatus_F_contig15390:1876..2020Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15390 1877..2020 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15390.3987.1prot_H-canaliculatus_F_contig15390.3987.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15390 1877..2020 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15390.3987.1

>prot_H-canaliculatus_F_contig15390.3987.1 ID=prot_H-canaliculatus_F_contig15390.3987.1|Name=mRNA_H-canaliculatus_F_contig15390.3987.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=48bp
RKTKNEAYNTGYSQAVTHPSTNPARQGLTSVIGREPVLSLWYGRRRGN
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mRNA from alignment at H-canaliculatus_F_contig15390:1877..2020-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15390.3987.1 ID=mRNA_H-canaliculatus_F_contig15390.3987.1|Name=mRNA_H-canaliculatus_F_contig15390.3987.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=144bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15390:1877..2020- (Hapterophycus canaliculatus Oshoro5f female)
CGCAAGACAAAAAATGAAGCCTACAACACGGGGTATTCCCAGGCGGTCAC
CCATCCAAGTACTAACCCCGCCCGACAGGGCTTAACTTCGGTGATCGGAC
GAGAACCGGTGCTTTCCCTGTGGTATGGTCGTAGACGAGGAAAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15390:1877..2020-

>mRNA_H-canaliculatus_F_contig15390.3987.1 ID=mRNA_H-canaliculatus_F_contig15390.3987.1|Name=mRNA_H-canaliculatus_F_contig15390.3987.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=288bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15390:1877..2020- (Hapterophycus canaliculatus Oshoro5f female)
CGCAAGACAAAAAATGAAGCCTACAACACGGGGTATTCCCAGGCGGTCAC
CCATCCAAGTACTAACCCCGCCCGACAGGGCTTAACTTCGGTGATCGGAC
GAGAACCGGTGCTTTCCCTGTGGTATGGTCGTAGACGAGGAAATCGCAAG
ACAAAAAATGAAGCCTACAACACGGGGTATTCCCAGGCGGTCACCCATCC
AAGTACTAACCCCGCCCGACAGGGCTTAACTTCGGTGATCGGACGAGAAC
CGGTGCTTTCCCTGTGGTATGGTCGTAGACGAGGAAAT
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