mRNA_H-canaliculatus_F_contig15390.3986.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15390.3986.1
Unique NamemRNA_H-canaliculatus_F_contig15390.3986.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15390.3986.1 vs. uniprot
Match: A0A4C1ZQD6_EUMVA (Uncharacterized protein n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1ZQD6_EUMVA)

HSP 1 Score: 71.6 bits (174), Expect = 2.980e-14
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   34 PHYQKLYARVTHIWGNRKGQPSRSAMKGPRLERTASLITVPPASGKYAFSASALGEKI 207
            PHYQKL  RVT I GNR+GQP RSAM+GPR   TA +ITV P  GKYA  A+A G  +
Sbjct:    7 PHYQKLRVRVTRIRGNRRGQPDRSAMEGPRPGGTAFVITVSPTPGKYARGAAARGRGV 64
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15390.3986.1 vs. uniprot
Match: A0A4C1ZNX3_EUMVA (Uncharacterized protein n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1ZNX3_EUMVA)

HSP 1 Score: 71.6 bits (174), Expect = 7.260e-14
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   34 PHYQKLYARVTHIWGNRKGQPSRSAMKGPRLERTASLITVPPASGKYAFSASALGEKI 207
            PHYQKL  RVT I GNR+GQP RSAM+GPR   TA +ITV P  GKYA  A+A G  +
Sbjct:   43 PHYQKLRVRVTRIRGNRRGQPDRSAMEGPRPGGTAFVITVSPTPGKYARGAAARGRGV 100
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15390.3986.1 vs. uniprot
Match: A0A4C1ZPD9_EUMVA (Uncharacterized protein n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1ZPD9_EUMVA)

HSP 1 Score: 71.6 bits (174), Expect = 9.580e-14
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   34 PHYQKLYARVTHIWGNRKGQPSRSAMKGPRLERTASLITVPPASGKYAFSASALGEKI 207
            PHYQKL  RVT I GNR+GQP RSAM+GPR   TA +ITV P  GKYA  A+A G  +
Sbjct:   53 PHYQKLRVRVTRIRGNRRGQPDRSAMEGPRPGGTAFVITVSPTPGKYARGAAARGRGV 110
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15390.3986.1 vs. uniprot
Match: A0A485PHG1_LYNPA (Uncharacterized protein (Fragment) n=1 Tax=Lynx pardinus TaxID=191816 RepID=A0A485PHG1_LYNPA)

HSP 1 Score: 67.8 bits (164), Expect = 3.300e-13
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   19 SANAGPHYQKLYARVTHIWGNRKGQPSRSAMKGPRLERTASLITVPPASGKYA 177
            SANA PHY KL +RV+HIWGNR+GQ  RSAM  PR  +T  +I V P  GKYA
Sbjct:    2 SANAVPHYHKLCSRVSHIWGNRRGQHIRSAMDKPRPGKTTFVIMVSPLPGKYA 54
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15390.3986.1 vs. uniprot
Match: UPI00189F0E4D (uncharacterized protein LOC119532393 n=1 Tax=Choloepus didactylus TaxID=27675 RepID=UPI00189F0E4D)

HSP 1 Score: 70.1 bits (170), Expect = 1.230e-12
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   10 SGTSANAGPHYQKLYARVTHIWGNRKGQPSRSAMKGPRLERTASLITVPPASGKY 174
            SG SANA PHY KL +RV+HIWGNR+GQ  RSAM  PR  +T  +I V P  GKY
Sbjct:   15 SGESANAVPHYHKLCSRVSHIWGNRRGQHIRSAMDKPRPGKTTFVIMVSPLPGKY 69
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15390.3986.1 vs. uniprot
Match: Q91874_XENLA (Xenopus laevis tandemly arranged embryonic U1 snRNA genes U1a/U1b n=1 Tax=Xenopus laevis TaxID=8355 RepID=Q91874_XENLA)

HSP 1 Score: 68.9 bits (167), Expect = 2.600e-12
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   10 SGTSANAGPHYQKLYARVTHIWGNRKGQPSRSAMKGPRLERTASLITVPPASGKY 174
            SG SANA PHYQKL +RV+ IWGNR+GQ SRSAM  PR  RT  +I V    GKY
Sbjct:   63 SGESANAVPHYQKLCSRVSRIWGNRRGQHSRSAMAEPRPGRTTFVIMVSRLPGKY 117
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15390.3986.1 vs. uniprot
Match: A0A0N1IPY5_PAPMA (Uncharacterized protein n=1 Tax=Papilio machaon TaxID=76193 RepID=A0A0N1IPY5_PAPMA)

HSP 1 Score: 63.2 bits (152), Expect = 2.920e-11
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   34 PHYQKLYARVTHIWGNRKGQPSRSAMKGPRLERTASLITVPPASGKYAFSASA 192
            PHYQKL  RV  I  NR+GQP+RSAM+GPR   TA +ITV P  GKY +  +A
Sbjct:    9 PHYQKLRVRVIRIRDNRRGQPNRSAMEGPRPGGTAFVITVAPTPGKYDYEIAA 61
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15390.3986.1 vs. uniprot
Match: A0A1D5P469_CHICK (Uncharacterized protein n=1 Tax=Gallus gallus TaxID=9031 RepID=A0A1D5P469_CHICK)

HSP 1 Score: 68.2 bits (165), Expect = 2.970e-11
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   10 SGTSANAGPHYQKLYARVTHIWGNRKGQPSRSAMKGPRLERTASLITVPPASGKYAF 180
            SG SANA PHY KL +RV+ IWGNR+GQ +RSA   PR  +T  LI V P  GKYA 
Sbjct:   32 SGESANAVPHYHKLCSRVSRIWGNRRGQHTRSAGDEPRPGKTTCLIMVSPLPGKYAL 88
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15390.3986.1 vs. uniprot
Match: A0A8K0NVE6_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0NVE6_LADFU)

HSP 1 Score: 62.8 bits (151), Expect = 3.940e-11
Identity = 33/57 (57.89%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:   34 PHYQKLYARVTHIWGNRKGQPSRSAMKGPRLERTASLITVPPASGKYAFSASALGEK 204
            P+YQKL ARVTHIWGNR+GQP RSAM  PR   TA  ITV P     A    A  E+
Sbjct:    9 PYYQKLRARVTHIWGNRRGQPDRSAMAEPRPGGTAFRITVAPTPESTASQHGASRER 65
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15390.3986.1 vs. uniprot
Match: A0A6L2PC27_COPFO (Uncharacterized protein (Fragment) n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2PC27_COPFO)

HSP 1 Score: 60.5 bits (145), Expect = 1.450e-8
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   34 PHYQKLYARVTHIWGNRKGQPSRSAMKGPRLERTASLITVPP 159
            P YQKL ARVTHIWGNR+GQP+RSAM+G     TA  ITV P
Sbjct:  281 PDYQKLRARVTHIWGNRRGQPNRSAMEGSHPGGTAFRITVTP 322
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15390.3986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A4C1ZQD6_EUMVA2.980e-1462.07Uncharacterized protein n=1 Tax=Eumeta variegata T... [more]
A0A4C1ZNX3_EUMVA7.260e-1462.07Uncharacterized protein n=1 Tax=Eumeta variegata T... [more]
A0A4C1ZPD9_EUMVA9.580e-1462.07Uncharacterized protein n=1 Tax=Eumeta variegata T... [more]
A0A485PHG1_LYNPA3.300e-1362.26Uncharacterized protein (Fragment) n=1 Tax=Lynx pa... [more]
UPI00189F0E4D1.230e-1261.82uncharacterized protein LOC119532393 n=1 Tax=Cholo... [more]
Q91874_XENLA2.600e-1263.64Xenopus laevis tandemly arranged embryonic U1 snRN... [more]
A0A0N1IPY5_PAPMA2.920e-1158.49Uncharacterized protein n=1 Tax=Papilio machaon Ta... [more]
A0A1D5P469_CHICK2.970e-1159.65Uncharacterized protein n=1 Tax=Gallus gallus TaxI... [more]
A0A8K0NVE6_LADFU3.940e-1157.89Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A6L2PC27_COPFO1.450e-869.05Uncharacterized protein (Fragment) n=1 Tax=Coptote... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15390contigH-canaliculatus_F_contig15390:781..1074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score64.7
Seed ortholog evalue2.8e-08
Seed eggNOG ortholog9694.XP_007086852.1
Preferred nameRAD51C
KEGG koko:K10870
KEGG Pathwayko03440,ko03460,map03440,map03460
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000280,GO:0000400,GO:0000707,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000730,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007066,GO:0007127,GO:0007131,GO:0007135,GO:0007140,GO:0007141,GO:0007143,GO:0007276,GO:0007283,GO:0007292,GO:0007346,GO:0007596,GO:0007599,GO:0008094,GO:0008150,GO:0008152,GO:0008821,GO:0009314,GO:0009611,GO:0009628,GO:0009987,GO:0010212,GO:0010389,GO:0010564,GO:0010971,GO:0016043,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016887,GO:0016889,GO:0016894,GO:0017111,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030054,GO:0031974,GO:0031981,GO:0032200,GO:0032501,GO:0032504,GO:0032991,GO:0033061,GO:0033063,GO:0033065,GO:0033554,GO:0034622,GO:0034641,GO:0035825,GO:0042060,GO:0042148,GO:0042592,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045003,GO:0045132,GO:0045144,GO:0045787,GO:0045931,GO:0046483,GO:0048232,GO:0048285,GO:0048471,GO:0048476,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051177,GO:0051276,GO:0051321,GO:0051704,GO:0051716,GO:0051726,GO:0060249,GO:0061982,GO:0061983,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0071704,GO:0071824,GO:0071840,GO:0090068,GO:0090304,GO:0090305,GO:0090735,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902749,GO:1902751,GO:1903046
EggNOG free text desc.RAD51 paralog C
EggNOG OGs38DIB@33154,3BH3B@33208,3CYCE@33213,3EGZW@33554,3JCAD@40674,48655@7711,48X3H@7742,COG0468@1,KOG1434@2759
COG Functional cat.DL
Best tax levelCarnivora
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929276.2181885-CDS-H-canaliculatus_F_contig15390:780..10741622929276.2181885-CDS-H-canaliculatus_F_contig15390:780..1074Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15390 781..1074 +
1696845746.6844466-CDS-H-canaliculatus_F_contig15390:780..10741696845746.6844466-CDS-H-canaliculatus_F_contig15390:780..1074Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15390 781..1074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15390.3986.1prot_H-canaliculatus_F_contig15390.3986.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15390 781..1074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15390.3986.1

>prot_H-canaliculatus_F_contig15390.3986.1 ID=prot_H-canaliculatus_F_contig15390.3986.1|Name=mRNA_H-canaliculatus_F_contig15390.3986.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=98bp
MTFSGTSANAGPHYQKLYARVTHIWGNRKGQPSRSAMKGPRLERTASLIT
VPPASGKYAFSASALGEKIHLPLGPCGSALRASENVGQRPFLPLSVV*
back to top

mRNA from alignment at H-canaliculatus_F_contig15390:781..1074+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15390.3986.1 ID=mRNA_H-canaliculatus_F_contig15390.3986.1|Name=mRNA_H-canaliculatus_F_contig15390.3986.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=294bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15390:781..1074+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACTTTTTCGGGGACGAGCGCGAACGCAGGTCCCCACTACCAGAAATT
ATACGCTCGAGTTACCCACATTTGGGGTAATCGCAAGGGTCAACCCAGTC
GAAGTGCAATGAAAGGGCCTCGCCTTGAGAGGACTGCCTCCTTGATCACA
GTACCTCCCGCGTCAGGTAAGTATGCTTTTTCAGCGTCTGCCCTCGGTGA
AAAAATCCACTTACCCCTAGGTCCTTGTGGTAGTGCTTTGCGCGCTTCAG
AAAACGTAGGCCAGCGGCCGTTCCTGCCATTGTCTGTGGTCTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15390:781..1074+

>mRNA_H-canaliculatus_F_contig15390.3986.1 ID=mRNA_H-canaliculatus_F_contig15390.3986.1|Name=mRNA_H-canaliculatus_F_contig15390.3986.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=588bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15390:781..1074+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACTTTTTCGGGGACGAGCGCGAACGCAGGTCCCCACTACCAGAAATT
ATACGCTCGAGTTACCCACATTTGGGGTAATCGCAAGGGTCAACCCAGTC
GAAGTGCAATGAAAGGGCCTCGCCTTGAGAGGACTGCCTCCTTGATCACA
GTACCTCCCGCGTCAGGTAAGTATGCTTTTTCAGCGTCTGCCCTCGGTGA
AAAAATCCACTTACCCCTAGGTCCTTGTGGTAGTGCTTTGCGCGCTTCAG
AAAACGTAGGCCAGCGGCCGTTCCTGCCATTGTCTGTGGTCTGAATGACT
TTTTCGGGGACGAGCGCGAACGCAGGTCCCCACTACCAGAAATTATACGC
TCGAGTTACCCACATTTGGGGTAATCGCAAGGGTCAACCCAGTCGAAGTG
CAATGAAAGGGCCTCGCCTTGAGAGGACTGCCTCCTTGATCACAGTACCT
CCCGCGTCAGGTAAGTATGCTTTTTCAGCGTCTGCCCTCGGTGAAAAAAT
CCACTTACCCCTAGGTCCTTGTGGTAGTGCTTTGCGCGCTTCAGAAAACG
TAGGCCAGCGGCCGTTCCTGCCATTGTCTGTGGTCTGA
back to top