mRNA_H-canaliculatus_F_contig1539.3984.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1539.3984.1
Unique NamemRNA_H-canaliculatus_F_contig1539.3984.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1539.3984.1 vs. uniprot
Match: D8LC22_ECTSI (Glyco_transf_41 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC22_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.320e-14
Identity = 54/121 (44.63%), Postives = 65/121 (53.72%), Query Frame = 1 
Query:    1 MPEEDIPWLESWAEAVVHASNTDQSER--------------------AQRDVQAHT---TQRPGDHDDTPLRRGAHVDGEQHRLRTS-VQGRRTAMKEAVRGRYAFSATARLWAEEMTRET 291
            +PE D+PWLESWA AVVHAS TD SER                    ++R  + HT   T   GD +    +    V G+  R R   VQ RR  MK AVR RYAFS+TA+LWA EMT E+
Sbjct:  816 LPEHDMPWLESWARAVVHASKTDTSERIRQRGAPKAGTRSEIPGTDASERGARKHTKGATAHDGDREHDASQGFESVVGQGQRGRFGCVQDRREDMKAAVRERYAFSSTAKLWAREMTGES 936
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1539.3984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC22_ECTSI3.320e-1444.63Glyco_transf_41 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1539contigH-canaliculatus_F_contig1539:8509..8805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue5.4e-12
Seed eggNOG ortholog2880.D8LC22
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929275.1764789-CDS-H-canaliculatus_F_contig1539:8508..88051622929275.1764789-CDS-H-canaliculatus_F_contig1539:8508..8805Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1539 8509..8805 +
1696845746.455232-CDS-H-canaliculatus_F_contig1539:8508..88051696845746.455232-CDS-H-canaliculatus_F_contig1539:8508..8805Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1539 8509..8805 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1539.3984.1prot_H-canaliculatus_F_contig1539.3984.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1539 8509..8805 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1539.3984.1

>prot_H-canaliculatus_F_contig1539.3984.1 ID=prot_H-canaliculatus_F_contig1539.3984.1|Name=mRNA_H-canaliculatus_F_contig1539.3984.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=99bp
MPEEDIPWLESWAEAVVHASNTDQSERAQRDVQAHTTQRPGDHDDTPLRR
GAHVDGEQHRLRTSVQGRRTAMKEAVRGRYAFSATARLWAEEMTRETGR
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mRNA from alignment at H-canaliculatus_F_contig1539:8509..8805+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1539.3984.1 ID=mRNA_H-canaliculatus_F_contig1539.3984.1|Name=mRNA_H-canaliculatus_F_contig1539.3984.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=297bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1539:8509..8805+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCGGAGGAGGACATACCTTGGTTGGAAAGCTGGGCCGAGGCAGTCGT
TCATGCTTCGAACACGGACCAATCGGAACGAGCCCAAAGGGACGTACAAG
CGCACACCACCCAACGGCCGGGCGATCATGATGACACCCCACTTCGACGA
GGTGCCCACGTGGACGGAGAGCAGCACCGTCTTCGGACGAGTGTGCAGGG
CCGAAGGACGGCCATGAAGGAAGCGGTTAGAGGACGGTACGCCTTCAGCG
CGACGGCGAGGCTATGGGCGGAGGAGATGACGAGAGAAACAGGTCGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1539:8509..8805+

>mRNA_H-canaliculatus_F_contig1539.3984.1 ID=mRNA_H-canaliculatus_F_contig1539.3984.1|Name=mRNA_H-canaliculatus_F_contig1539.3984.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=594bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1539:8509..8805+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCGGAGGAGGACATACCTTGGTTGGAAAGCTGGGCCGAGGCAGTCGT
TCATGCTTCGAACACGGACCAATCGGAACGAGCCCAAAGGGACGTACAAG
CGCACACCACCCAACGGCCGGGCGATCATGATGACACCCCACTTCGACGA
GGTGCCCACGTGGACGGAGAGCAGCACCGTCTTCGGACGAGTGTGCAGGG
CCGAAGGACGGCCATGAAGGAAGCGGTTAGAGGACGGTACGCCTTCAGCG
CGACGGCGAGGCTATGGGCGGAGGAGATGACGAGAGAAACAGGTCGAATG
CCGGAGGAGGACATACCTTGGTTGGAAAGCTGGGCCGAGGCAGTCGTTCA
TGCTTCGAACACGGACCAATCGGAACGAGCCCAAAGGGACGTACAAGCGC
ACACCACCCAACGGCCGGGCGATCATGATGACACCCCACTTCGACGAGGT
GCCCACGTGGACGGAGAGCAGCACCGTCTTCGGACGAGTGTGCAGGGCCG
AAGGACGGCCATGAAGGAAGCGGTTAGAGGACGGTACGCCTTCAGCGCGA
CGGCGAGGCTATGGGCGGAGGAGATGACGAGAGAAACAGGTCGA
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