mRNA_H-canaliculatus_F_contig1538.3978.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1538.3978.1
Unique NamemRNA_H-canaliculatus_F_contig1538.3978.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1538.3978.1 vs. uniprot
Match: D7G204_ECTSI (PPPDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G204_ECTSI)

HSP 1 Score: 363 bits (931), Expect = 8.530e-117
Identity = 183/228 (80.26%), Postives = 193/228 (84.65%), Query Frame = 1 
Query:  163 QVTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKAPGARFREAVGMGSFTGGSRALADAIDSLREDFGPDRYNVLTRNCNTFSSALCEELVGRPIPGYVNRLAWMGSWFSCLMPPGMLGDAPVNEGGGSSYSAGYSMVAPPGRSRPAAATRGGARTAAFQGSGMXXXXXXXXXXXXXXXXXXXXVGGAGTGRESELSDRRERMRMAALRRAE 846
            +VTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDH+PRKAPGARFREAV MGSFTGGS +L+ AIDSLRE+FGPDRYNVLTRNCN+FSSALCEELVG+PIPGYVNRLAWMGSWFSCLMPPGMLGDAPVN+GG SSY+AGYSM+APPGRS   AA RGG    AFQGSGM                     GG GTGRE ELSDRRERMRMAALRRAE
Sbjct:   10 EVTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHEPRKAPGARFREAVNMGSFTGGSSSLSRAIDSLREEFGPDRYNVLTRNCNSFSSALCEELVGKPIPGYVNRLAWMGSWFSCLMPPGMLGDAPVNQGGSSSYNAGYSMLAPPGRSSGPAAVRGGGSRNAFQGSGMTLAGSGGSAGTTSGSS----TGGTGTGREGELSDRRERMRMAALRRAE 233
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BLAST of mRNA_H-canaliculatus_F_contig1538.3978.1 vs. uniprot
Match: A0A835Z1G9_9STRA (PPPDE putative peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1G9_9STRA)

HSP 1 Score: 212 bits (540), Expect = 6.130e-60
Identity = 102/179 (56.98%), Postives = 128/179 (71.51%), Query Frame = 1 
Query:  163 QVTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKAPGARFREAVGMGSFTGGSRALADAIDSLREDFGPDRYNVLTRNCNTFSSALCEELVGRPIPGYVNRLAWMGSWFSCLMPPGMLGDAPVNEGGGSSYSAGYSMVAPPGRSRPAAATRGGARTAAFQGSG 699
            +V LNVYDL+  NE+ H  G G++HSG+++ G+EYTFAGGGGIF H+P+ APGARFR +V MG+FTGG  A+ DAI SLR DFGPD Y++L RNCN+FS+A CE L+ +PIP +VNR AWMGSWFSCL+PP MLG APVN+  G    A  +  A  G       T GG  +AA   +G
Sbjct:   13 EVLLNVYDLNEANEYLHSTGFGLYHSGVQIGGKEYTFAGGGGIFSHEPKDAPGARFRCSVSMGTFTGGQAAIDDAIASLRGDFGPDAYHILCRNCNSFSNAFCEALLNKPIPAWVNRAAWMGSWFSCLVPPQMLGQAPVNDLSGVPARATPAYAAFGGSGVSLGGTAGGGASAAVPSAG 191
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BLAST of mRNA_H-canaliculatus_F_contig1538.3978.1 vs. uniprot
Match: K0RSF7_THAOC (PPPDE domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RSF7_THAOC)

HSP 1 Score: 190 bits (482), Expect = 1.520e-50
Identity = 109/233 (46.78%), Postives = 141/233 (60.52%), Query Frame = 1 
Query:  166 VTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKAPGARFREAVGMGSFTGGSRALADAIDSLREDFGPDRYNVLTRNCNTFSSALCEELVGRPIPGYVNRLAWMGSWFSCLMPPGMLGDAPVNEGGGSSYSAGYSMVAPPGRSRPAAATRGGARTAAFQGSGMXXXXXXXXXXXXXXXXXXXXVGGAGTGRESE------LSDRRERMRMAALRRAE 846
            V LNVYDLSP NE+   +GLG+ HSG+EV GREY+FA GGG+FD  P++APGA+FRE++ +G F GGS  L  AI  LRE+FGPDRYN++ RNCN F++AL   L+GR IPG+VNRLA  G+  SCL+P  +L +APV  GGGS   + Y + +P  +  PA           F GSG                       G+  GR S+      L+DRRE+ + AAL R E
Sbjct:  108 VILNVYDLSPANEYLCSVGLGLHHSGVEVLGREYSFASGGGVFDSSPKEAPGAKFRESIELGHFEGGSAELNAAIGDLREEFGPDRYNLIRRNCNHFANALVWRLLGRTIPGHVNRLADYGNCCSCLIPRKLLEEAPVGPGGGSGNGSSYQVFSPKKQDTPAV----------FSGSGHTLGAPSQEGRMSLL--------GSWRGRASQKKAQESLTDRREKAKRAALARME 322
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BLAST of mRNA_H-canaliculatus_F_contig1538.3978.1 vs. uniprot
Match: A0A7S2BXA3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BXA3_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.710e-49
Identity = 86/147 (58.50%), Postives = 108/147 (73.47%), Query Frame = 1 
Query:  166 VTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKAPGARFREAVGMGSFTGGSRALADAIDSLREDFGPDRYNVLTRNCNTFSSALCEELVGRPIPGYVNRLAWMGSWFSCLMPPGMLGDAPVNEGGGSSYS 606
            V LNVYDLS  NE G+  GLG +HSG+E+  REYTFAGG GIFD  PR APGARFRE++ +G+F GG  AL+ A+D L+  F P  YNV+T+NCN FS AL  +L+  PIPG+VNRL+ +G+ FSCL+PP +LG +PVN  GG   S
Sbjct:   29 VVLNVYDLSEANELGYSCGLGAYHSGVEIGDREYTFAGGAGIFDTTPRDAPGARFRESITLGTFEGGQGALSRALDELKPFFDPSSYNVITKNCNHFSDALSRQLLDTPIPGWVNRLSNIGNCFSCLIPPQLLGQSPVNAPGGGGGS 175
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BLAST of mRNA_H-canaliculatus_F_contig1538.3978.1 vs. uniprot
Match: A0A7S2XZ08_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ08_9STRA)

HSP 1 Score: 177 bits (449), Expect = 5.130e-48
Identity = 85/155 (54.84%), Postives = 111/155 (71.61%), Query Frame = 1 
Query:  118 SGGSPSPATRHS*YGQVTLNVYDLSP-VNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKAPGARFREAVGMGSFTGGSRALADAIDSLREDFGPDRYNVLTRNCNTFSSALCEELVGRPIPGYVNRLAWMGSWFSCLMPPGMLGDAPV 579
            SG +P    R     +V LNVYDLS  VN++  P G G+ HSG+EV GREY+FA G GIFD  PR+AP A FREA+ +G+   G   +  A+ +L  +FGPD+Y++L +NCN+F+ A C+ELVGR IPG+VNRLA+MGS FSCL+PP  LG+APV
Sbjct:    2 SGHNPGWGARTGFAQKVILNVYDLSQEVNQYAAPFGFGLHHSGVEVGGREYSFASGAGIFDSTPRQAPNAVFREAIEIGAVEDGEAGVQRALSNLEAEFGPDKYHILNKNCNSFADAFCQELVGRGIPGWVNRLAYMGSMFSCLIPPEYLGEAPV 156
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BLAST of mRNA_H-canaliculatus_F_contig1538.3978.1 vs. uniprot
Match: W7U9V7_9STRA (PPPDE domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U9V7_9STRA)

HSP 1 Score: 174 bits (440), Expect = 6.030e-46
Identity = 93/196 (47.45%), Postives = 125/196 (63.78%), Query Frame = 1 
Query:  115 NSGGSPSPATRHS*YGQVTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKAPGARFREAVGMGSFTGGSRALADAIDSLREDFGPDRYNVLTRNCNTFSSALCEELVGRPIPGYVNRLAWMGSWFSCLMPPGMLGDAPVNEGGGSSYSAGYSMVAPPGRSRPAAATRGGARTAAFQGSGM 702
            N+G S    T       V LNVYDL   N + HP+G+GV+H+G+E+ G EYT+AGG GIF   PR APGA FRE++ +G+     RAL  A+++LR DFGPD Y+++  NCN FS+AL  EL+G+PIP YVNRLA+ GS+FSC +P  M   APV++ G S+ +A  S+       +    T  G RTA F G G+
Sbjct:    5 NNGDSTGSGT------MVYLNVYDLHAANRYAHPLGMGVYHTGVEIAGSEYTYAGGAGIFAMYPRVAPGATFRESIPLGTVLDAPRALRRALEALRSDFGPDDYSLVKLNCNHFSAALVMELLGKPIPAYVNRLAFFGSFFSCFLPVEMTSQAPVSQEGNSTGAAEPSV-------QRFIGTSSGTRTA-FSGEGV 186
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BLAST of mRNA_H-canaliculatus_F_contig1538.3978.1 vs. uniprot
Match: W2M287_PHYPR (PPPDE domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2M287_PHYPR)

HSP 1 Score: 171 bits (434), Expect = 2.370e-45
Identity = 96/230 (41.74%), Postives = 129/230 (56.09%), Query Frame = 1 
Query:  166 VTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKAPGARFREAVGMGSFTGGSRALADAIDSLREDFGPDRYNVLTRNCNTFSSALCEELVGRPIPGYVNRLAWMGSWFSCLMPPGMLGDAPVNEGGGSSYSAGYSMVAPPGRSRPAAATRGGARTA-----AFQGSGMXXXXXXXXXXXXXXXXXXXXVGGAGTGRESELSDRRERMRMAALRR 840
            VTLN+YDL   NEF  P+G G+FHSG+E+ G E+++A G G+F   PR+APGA+FRE++ MG F G S+       SL  DF  D YN+ TRNCNT++ ALC+ L+ +PIPGYVNR A++GS+ SCLMP  +   APV +                  S P+  T G  R +      F GSG                     V  + +   S L+DRRE++R+AALRR
Sbjct:    7 VTLNIYDLVEANEFMAPLGFGIFHSGVEIAGEEFSYASGAGVFSSSPRQAPGAKFRESIDMGFFEGTSQEAHRLAYSLSPDFEGDAYNLFTRNCNTYADALCQLLLNKPIPGYVNRAAYLGSFLSCLMPADLTDQAPVGD-----------------PSTPSRITNGTPRRSDFIYTPFAGSGQTVGST---------------VDASSSSESSTLADRREKVRLAALRR 204
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BLAST of mRNA_H-canaliculatus_F_contig1538.3978.1 vs. uniprot
Match: A0A7S1YZ49_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YZ49_TRICV)

HSP 1 Score: 169 bits (429), Expect = 2.540e-45
Identity = 78/142 (54.93%), Postives = 102/142 (71.83%), Query Frame = 1 
Query:  163 QVTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKAPGARFREAVGMGSFTGGSRALADAIDSLREDFGPDRYNVLTRNCNTFSSALCEELVGRPIPGYVNRLAWMGSWFSCLMPPGMLGDAPVNEG 588
            +V LN+YDL+P NE+ +PIG G+ HSG+E+ G EY+FA G G+FD  PR+APGARFRE+V +G++ GGS      ID LR  FGP  YN+L RNCN F+ ALC  L+GR IP ++NRLA +G   SCL+P  +L D+PV  G
Sbjct:   13 KVMLNLYDLTPANEYLYPIGFGLHHSGVEIGGTEYSFASGAGVFDSTPREAPGARFRESVELGTYEGGSGDARVVIDDLRSSFGPSDYNLLKRNCNHFADALCWALLGRRIPAHINRLADIGVCLSCLLPRSVLEDSPVGPG 154
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BLAST of mRNA_H-canaliculatus_F_contig1538.3978.1 vs. uniprot
Match: A0A7S2WP56_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WP56_9STRA)

HSP 1 Score: 172 bits (436), Expect = 3.260e-45
Identity = 109/232 (46.98%), Postives = 140/232 (60.34%), Query Frame = 1 
Query:  157 YGQ-VTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKAPGARFREAVGMGSFTGGSRALADAIDSLREDFGPDRYNVLTRNCNTFSSALCEELVGRPIPGYVNRLAWMGSWFSCLMPPGMLGDAPVNE------GGGSSYSAGYSMVAPPGRSRPAAATRGGARTAAFQGSGMXXXXXXXXXXXXXXXXXXXXVGGAGTGRESELSDRRERMRMAA 831
            YGQ VTL+VYDLS VNE+ HP+G G++HSG+++  +EYTFAGG GIFD  P++ P ARFRE+V +G F GG  AL  A+D L   F PD YN+L+ NCN FS AL + L+ R IPGYVNRLA +G+ F+  +P  +L D   +       GGG++  A    + P  R +P +       T AF G GM       XXXXXXX         +     SEL DRRER+R AA
Sbjct:   19 YGQRVTLHVYDLSEVNEYMHPLGFGLYHSGIQIGDKEYTFAGGSGIFDMTPKEVPNARFRESVELGMFEGGDPALRMALDDLSSQFRPDGYNLLSCNCNHFSEALSQRLLSRSIPGYVNRLASVGACFAGFIPRRLLEDNDGSRSQDSGTGGGAADGASGFQMFPGTRRQPVSGQPSRLSTGAFSGDGMALGSGSSXXXXXXXV--------SSQSSPSELHDRRERVRAAA 242
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BLAST of mRNA_H-canaliculatus_F_contig1538.3978.1 vs. uniprot
Match: A0A7S2NUD0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NUD0_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.060e-44
Identity = 101/243 (41.56%), Postives = 142/243 (58.44%), Query Frame = 1 
Query:  166 VTLNVYDLSPVNEFG-HPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKAPGARFREAVGMGSFTGGSRALADAIDSLREDFGPDRYNVLTRNCNTFSSALCEELVGRPIPGYVNRLAWMGSWFSCLMPPGMLGDAPVN----EGGGSSYSAGYSMVAPPGRSRPAAATRGGA-----RTAAFQGSGMXXXXXXXXXXXXXXXXXXXXV---GGAGTGRES---ELSDRRERMRMAALRRAE 846
            V LNVYDLSP NE   + +GLGV HSG+E+ G+EY+FA G GIFD  P++ P A+FRE++ MGSF GG+  +  AI  LR++FGP+ YN++ +NCN F++ALC  L+ +PIPG+VNR+A +G++ +CL+P  ML DAPVN      GG S   G      P  +R       GA      T  F GSG                     +   G + +G+ +    +S++RE+ R+AAL R E
Sbjct:   18 VVLNVYDLSPANESCLYSLGLGVHHSGVEILGQEYSFASGAGIFDSTPKQVPNAKFRESIKMGSFDGGAAEIRSAISDLRQNFGPEDYNLVRKNCNHFANALCWRLLRKPIPGHVNRIADIGTYCACLLPRKMLDDAPVNPNGPSNGGDSGGGGSGFQVFPANARTMNRGASGAPATSMTTPMFSGSGARLGSSSSDTNATERSGFMSKIISRGNSSSGKSAGGESISEKREKARLAALARFE 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1538.3978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G204_ECTSI8.530e-11780.26PPPDE domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A835Z1G9_9STRA6.130e-6056.98PPPDE putative peptidase domain-containing protein... [more]
K0RSF7_THAOC1.520e-5046.78PPPDE domain-containing protein n=1 Tax=Thalassios... [more]
A0A7S2BXA3_9STRA1.710e-4958.50Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2XZ08_9STRA5.130e-4854.84Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W7U9V7_9STRA6.030e-4647.45PPPDE domain-containing protein n=2 Tax=Monodopsid... [more]
W2M287_PHYPR2.370e-4541.74PPPDE domain-containing protein n=8 Tax=Phytophtho... [more]
A0A7S1YZ49_TRICV2.540e-4554.93Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2WP56_9STRA3.260e-4546.98Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2NUD0_9STRA1.060e-4441.56Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1538contigH-canaliculatus_F_contig1538:373..5872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score242.7
Seed ortholog evalue1.6e-61
Seed eggNOG ortholog2880.D7G204
EggNOG free text desc.Lys63-specific deubiquitinase activity
EggNOG OGsKOG0324@1,KOG0324@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPPPDE putative peptidase domain
Ec32 orthologEc-07_003470.1
Exons5
Model size2411
Cds size621
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929274.4339597-UTR-H-canaliculatus_F_contig1538:372..6851622929274.4339597-UTR-H-canaliculatus_F_contig1538:372..685Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1538 373..685 +
1696845746.070391-UTR-H-canaliculatus_F_contig1538:372..6851696845746.070391-UTR-H-canaliculatus_F_contig1538:372..685Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1538 373..685 +
1622929274.4539216-UTR-H-canaliculatus_F_contig1538:2120..21521622929274.4539216-UTR-H-canaliculatus_F_contig1538:2120..2152Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1538 2121..2152 +
1696845746.0824091-UTR-H-canaliculatus_F_contig1538:2120..21521696845746.0824091-UTR-H-canaliculatus_F_contig1538:2120..2152Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1538 2121..2152 +
1622929274.5280519-UTR-H-canaliculatus_F_contig1538:4415..57691622929274.5280519-UTR-H-canaliculatus_F_contig1538:4415..5769Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1538 4416..5769 +
1696845746.1183724-UTR-H-canaliculatus_F_contig1538:4415..57691696845746.1183724-UTR-H-canaliculatus_F_contig1538:4415..5769Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1538 4416..5769 +
1622929274.5430198-UTR-H-canaliculatus_F_contig1538:5781..58721622929274.5430198-UTR-H-canaliculatus_F_contig1538:5781..5872Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1538 5782..5872 +
1696845746.1276188-UTR-H-canaliculatus_F_contig1538:5781..58721696845746.1276188-UTR-H-canaliculatus_F_contig1538:5781..5872Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1538 5782..5872 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929274.4733975-CDS-H-canaliculatus_F_contig1538:2152..23331622929274.4733975-CDS-H-canaliculatus_F_contig1538:2152..2333Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1538 2153..2333 +
1696845746.0935962-CDS-H-canaliculatus_F_contig1538:2152..23331696845746.0935962-CDS-H-canaliculatus_F_contig1538:2152..2333Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1538 2153..2333 +
1622929274.4888806-CDS-H-canaliculatus_F_contig1538:2693..28581622929274.4888806-CDS-H-canaliculatus_F_contig1538:2693..2858Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1538 2694..2858 +
1696845746.1027308-CDS-H-canaliculatus_F_contig1538:2693..28581696845746.1027308-CDS-H-canaliculatus_F_contig1538:2693..2858Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1538 2694..2858 +
1622929274.5095873-CDS-H-canaliculatus_F_contig1538:4140..44151622929274.5095873-CDS-H-canaliculatus_F_contig1538:4140..4415Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1538 4141..4415 +
1696845746.110572-CDS-H-canaliculatus_F_contig1538:4140..44151696845746.110572-CDS-H-canaliculatus_F_contig1538:4140..4415Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1538 4141..4415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1538.3978.1prot_H-canaliculatus_F_contig1538.3978.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1538 2153..4415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1538.3978.1

>prot_H-canaliculatus_F_contig1538.3978.1 ID=prot_H-canaliculatus_F_contig1538.3978.1|Name=mRNA_H-canaliculatus_F_contig1538.3978.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=207bp
MGSFTGGSRALADAIDSLREDFGPDRYNVLTRNCNTFSSALCEELVGRPI
PGYVNRLAWMGSWFSCLMPPGMLGDAPVNEGGGSSYSAGYSMVAPPGRSR
PAAATRGGARTAAFQGSGMSLAGSSGGGSTATIGSNGGSVGGAGTGRESE
LSDRRERMRMAALRRAEAAAAAATSAGAAAAGGGSSSNSNHSNASIAAGA
SSLKIS*
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mRNA from alignment at H-canaliculatus_F_contig1538:373..5872+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1538.3978.1 ID=mRNA_H-canaliculatus_F_contig1538.3978.1|Name=mRNA_H-canaliculatus_F_contig1538.3978.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5500bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1538:373..5872+ (Hapterophycus canaliculatus Oshoro5f female)
AGAAAGATCAGCTGGAAACCGCCGATGACTCGGCCCCGCGACGAAGCATG
GTCATCATGCGTCACCCCGACGCGGCTGGCGCCTCTCTATCGTCTTTCCC
CGTCAACCTGTAGCAATTCGGGCGGCTCACCGTCCCCAGCGACCCGGCAC
TCCTGATATGGGCAGGTGACGCTAAACGTGTACGACCTGAGCCCGGTAAA
TGAATTCGGCCACCCCATCGGACTGGGAGTGTTCCACAGTGGGCTCGAGG
TGGACGGGCGCGAGTACACCTTCGCCGGGGGGGGAGGAATCTTCGACCAC
GACCCTAGAAAAGGTGTGCAGCGTGGTGGCGAATCGAGGTGTCGATATGC
GGAAGGTGCAGGAAGCGCTCATGAAAACGGTTTTTACGTCAAGCCTCACT
CGGCCCTGTGTGTACATGCGGCTTGTCGTCGATTTCGATTTCGGTTTCGT
TTTTGTCGTGGTGGTGGTATTGGTGGCGTTGTCGTGGATGAGTGCTTTTG
AAAAAAAGAATCAGCAAGGCCGCAGGAATAGCCTCCTCTGGGACAAAGTG
TAGCGGCTCGGGATATTTGCGATTCATATCATGAGATGTCTGCTCCCCTC
CCCACGCCTCCCCGCATTTTCGCAGTGTTCAATGTGTACAAGCTAGGCTA
GAAAACATCAAATAGCACGCAAAAGAAAAGGCCAAAGTGCTATTTGTACA
TGGCAATATTTCTGCCCTTTTCTTTCCTTCCACGGGCCATTCTAAGGTAA
GCTACTTCGTAGGTATTGTCGTATTGTCGCTTACTTGCGTATGTCTGCGT
GTGTGTGTTTCGTCGATAGACAAGTGGACGGTCCAAGCACAAGATCTTCA
GAAGAAACTTGTCTTTGAAAAAGAAAGAAAAAGAAAGAGAAAGAGACAGA
AAGCAACACGTAGGGGACACCGTCTGAGCCACGCACACGTCTCAGCAGGC
GTCTCGGGAGCCTTGTGTTGAATCGTTTACGGTGAGGTTCCACTCCATAG
GACTGGATATCAACGTTGACCAGAGCAAAAGGGTGTGAGCGTCGGTTTGG
GTGAAACAAGCACGGGTTGTGGTGAGATGGACGTGATTGTAGGTGATATC
TCATGCAACACGTGAGACAAGCGATGCGTTCGTCCTGGCTATTCCTAGTT
TGTGTAATTAGTTGACAAATCGATGAGTTCACCGCCTAGGCACTTCGTGA
TACACGTGTCGAAAGCGTGTGAGCAGTGGAGCTGAAGGAAGAAGTAGATG
GCAGTCATGAAGAAAAGTGATCAACAGACGACTGTCCTTCTTCGCCGTTT
AACTCGTAGAGTTGACGAAAATGACTCGAATTTGTACACAACTAAGAGCA
AGCCCACATCCCACCTTCATTCCACGCCCATGTCTCCCTCCTCCTGCACA
ACCTTCCCGTGAAAGTTTCTGGCTTCTGCGGTACTAAGTTCTTCTGGGCG
TAGAAACAGCGTCGGTAGTGCTCCGTCTCGTGAGCTAGCTATTTGGCAGC
ACCTTGCCCCGGGCAAGATGCAGAAAGAAACAACCCCTCTCTCCTCCCTC
CATTCGTCCCTCCTCCCGTCCAAGCATCATTTCCCCGCCACATCATTGTT
CCCCTCCGAACCCTGTGCTAGTCATCTATCCATCCATCCCTCGTAGACGT
TCTCCTGTACCCTTGCAACCATCAATCCATCCCTAGCGGACGTTGCTTTG
ACCTCTACCAACATTCCATCCACCCTCGGTGGGCGCCCTTCCGTGCAGCC
CCCGGCGCGCGGTTTCGCGAGGCGGTAGGCATGGGCTCCTTCACGGGGGG
GTCTAGAGCCCTGGCGGACGCCATCGACTCCCTGAGAGAAGACTTCGGGC
CCGATCGCTACAACGTCCTGACTCGGAACTGCAACACCTTCTCGTCCGCC
CTCTGTGAGGAGCTTGTGGGGAGGCCCATCCCCGGCTACGTCAACCGGCT
CGCTTGGATGGGTGAGAGACAGAGCGAGCGGGGGGGCATGGGGGGGTGTC
GTGGTGGGTATCTAGGTAGCCCCCCGCCGCCCCTCTTCATTCAGACAACC
CAAGACGTCCCCTCCCCTGCTACCGTGGAGACTGCCCGCTGTAGATTCCA
TCCTATCTGGAACGTCCTGCGCTTTTTCTTTTCCACTCTCCGTCCCCGGA
CAGGCTCTCGAACCTGGCGCTTGGTGCCTCTTTGGGGACAGCTTGAGGGC
AGCTTCCGCCATGGGTGGGCCCTCGACCACGGAAAAGCTTCTCCGACCTC
TTTTTTTTGTCCAAACGATCCCTGGTTTGCTCAGCGTTTGTACCGCTCTT
GCCCGCCCCCCGACGTCTCAGGCTCTTGGTTCTCCTGCCTGATGCCACCG
GGCATGCTGGGAGACGCCCCGGTCAACGAAGGGGGGGGCTCCTCGTACAG
CGCGGGGTATTCGATGGTGGCGCCTCCGGGGAGGAGCCGGCCCGCCGCGG
CAACTCGAGGGGGGGCGAGAACGGCCGCCTTCCAAGGTGTGTTATTTGTG
CGTGTGTTGGACTACGCCGCCGGTGCTCGAGGGACACCAGTGGAATCGAC
CACGTTCTTACCGGCCGACCGATATGGGGACGACGACGTCGGGATGGTCG
GGACGTTCTGACGGCGGCGTAGAATCCGCGTTTGCCTTCGGTTGCATGCG
CAAATTTCGTTTCTTCCAGTGGCCGCGTTGGCCCGCTGATGAGAAGCAAG
CTGCGTAGATCGATGATCAGTGCCTGTGGACAGGCCGAGAGTTGAAAGGC
AATTCCCCGGCCGCGGGTTGCCCGGACGAGGGGGGGGGCCCGGAGGGAGA
AAGCGGCGTCACCCTAGAAGTGTGCGTGGGCCCTGTGCCCATTTGTATCC
GCACGTATCGTTGTGAGCATCGACCGCGCGAGCCGGCTGATCAATGAATG
CCCGCCAGTCTCCGCATGGAAGAAGAGAGAAGAAAACGATTTTCTATTTT
CTACGTAGTAGTCGAGACGTGCCTGAGTTGAGTTATCCTTCGGCCGCTCC
CCCCCCGAGGTGTTTCGACAGCTAGTTTGGGCTAACGGCTGTTTGCGGTC
GACCCTCCAGCGGAGTGTGCGTACAAGTGATGTCTACGGCATGTCGTGTT
GTTTCTCAAGGTACTATTTGGCGTTCCGAGTGCTGTGTGGCGTTCCAATA
TGTTTTGTCTTGTTCCCCGTTCTCAGGTTTATGGTATCGTGAGTGCTTCT
CCGAGTTCATTTCCTGCAGGGTGTTCTTGATGCGTGCCTAGCACGGCGAG
GGACGGCACCACTGTTTCGGTTGCTGGTGCGCACGGTGCATGATCTCGCG
CTTCGCTTCGATCTTGCCATAACTACCCAGCCACGCTTCATATTGCAGCT
ACTACTGTAGTGCAGCACCGGTGGGGGAGGGCGTTGGCGGTGTGATTCAC
GCCATCGCGGCACGATTCTCTGACGCGGAAGGGGGCCCTTTACCCCTCCA
GGAAGTTCAAGGGCGACGCGCTCTGTTGGCACACTTGCAGCGCGGGTGCA
CGCAAGCTCCTTCTAGACCACTGCCCTCAAGGCATGGATTGTCTGGGGTC
GCGATGACCCCTCCCCATCGAAAACCGCGCGCCGTCGACGACTACACGTA
ACCAGTTTGTCGCCGGCGCTTCTTACCCCAAGGGTCGGCCGTGTTGACAA
TCTTTGTTGCTCCGCTCTCTGAATTTCCCTCCCACCTTTTTTCCTTCTGC
CCCTTCCGCCGCCTCTGCTGCTGCTGCTGCTGCTGCTGCTTACCCGACGC
TTTAATGCCGTTGTGCAGGCTCGGGCATGTCCCTGGCGGGGTCTAGCGGC
GGGGGGTCCACGGCCACGATCGGCAGCAACGGCGGTAGCGTCGGAGGAGC
GGGGACGGGGCGAGAAAGCGAACTGTCGGACAGGAGAGAGCGTATGCGCA
TGGCGGCGTTGCGACGAGCGGAGGCGGCGGCGGCGGCGGCGACTTCGGCG
GGGGCCGCTGCCGCTGGCGGCGGGAGCAGCAGCAACAGCAACCACAGTAA
CGCGTCCATTGCCGCGGGTGCCTCGAGCCTTAAGATCTCATGACCGCATG
CGCGTCCGTGTGTCGCACGATATTACCTTGTCGTGGCAGGGGCGAGGGGA
GAGGCTGTGGTAGATCGGTGTCGCGCGGTCCTGCCTGGTCGTTTTTTTGT
GTGTAAAGGTAAGTCTTCCTTTCGTGTTTTTTCGGTGCTGCTCTCCCCGG
CGCTTTGGACTTGTTTCGCGACTGAGAGGCGAGGGGGGGGGAACAGAAGC
CCGGTAGCGCACATGGCGAACCACCGATCTCGCCCTGACCTGCGCCTCCG
GTTCGAGTCGGGGACGAAAACTGCTCGAGGACGATGATTCAGGTTACGTG
TTTTTGTCGTGGCGGGGCTGGGTTCGTCTGATGGAGGTGCTGCGGTTATT
GTGTTGGTACATACGCTGAACGAATACAGGTGTGTCCAGTCGCAGTCCTC
CTGGGTGGCCGTTTGTGTTGCTTCGATCCCTTCTGACCATGTTCGCGTTT
TGTTCGAGGCACGAACCGCGTGCTCTTGGCTCGGCACTTCTGATGCGCCT
CGCTATCGACGTCGCTGCGCCTGAAAGCTCAGCAGTTCGATCTGTCTTCC
TTCGTTCGTTTTTTTTCGCGCGGGAACGTCGCTGTTGGGAGGCAAAAGCT
CACACTGTCGTGAGGCGACTTCGTGAGAGTTTTTCAAGGGCCCAGTGACG
CTGCCTGCATGGATTTTTTTTTGACATGGTAGATAGAACCCCTTGAGGCG
GTAGGTGTCAGTCTTCGCGAAGCATATGGTAACGTCCAGGTCGCTGCTAT
ACGGCGGCAGCGGCAGTACGGAAAAGCCTGCGAATTTGCGCGTGGCTGCT
GCATAATGATTGTGGGATTCGTCGGTGGCTCAAGCCCATCGGATGCCTCG
GGGGGGGGGAGTAGGACGGGGGGGTTGCGGAGGGAAGGAAGGCGGGTATG
CTAGTTGTGACAACTTTTGGCTTTTTGGCTCGCTAGGGGTTGACTGTATT
CCGCAGGAAGGATTGGTTTGTAAATAAAGGGCTCCGACTCCCGGTCGGGG
TCCTCCACAAGTGGCGAGGAACGAGGTGATATCGATGCCCGAAGAGCGCG
CGCGCGTGGCGTAGAGACGAGAGGGAAGGGTGTTAGCACGATTTACACCC
GGGTAGGTACCAAGGCGGGGAAGAACCGACAAGGCGGCGCGATGCTCCAG
AGCCGCCACAGGTGATGGTTTGCGAAATATTACTCAAGTGCCGGCACGCC
AAACCCGCCAAACCCTGGGTGCGGGTGGAACAATTTTGCGAAGTCTTGTC
TCCGCTCGGCCAGATGTGATCGTTAGAGCTTCTCGCGCCCTCCGGCGTTT
CTCGCGCACGCATACCGAGTCCTCGTCGATCTCTCAAGATTTGTTTCGTC
CGATGCGAGGTGCGCGTCGGCCGTATCAACAACACGTGCCGTCCCCCACA
CGTGTAATTTCTTGCGGTTGGTGGGGCATCCCTCCTTTTACGTGACAAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1538:373..5872+

>mRNA_H-canaliculatus_F_contig1538.3978.1 ID=mRNA_H-canaliculatus_F_contig1538.3978.1|Name=mRNA_H-canaliculatus_F_contig1538.3978.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1242bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1538:373..5872+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCTCCTTCACGGGGGGGTCTAGAGCCCTGGCGGACGCCATCGACTC
CCTGAGAGAAGACTTCGGGCCCGATCGCTACAACGTCCTGACTCGGAACT
GCAACACCTTCTCGTCCGCCCTCTGTGAGGAGCTTGTGGGGAGGCCCATC
CCCGGCTACGTCAACCGGCTCGCTTGGATGGATGGGCTCCTTCACGGGGG
GGTCTAGAGCCCTGGCGGACGCCATCGACTCCCTGAGAGAAGACTTCGGG
CCCGATCGCTACAACGTCCTGACTCGGAACTGCAACACCTTCTCGTCCGC
CCTCTGTGAGGAGCTTGTGGGGAGGCCCATCCCCGGCTACGTCAACCGGC
TCGCTTGGATGGGCTCTTGGTTCTCCTGCCTGATGCCACCGGGCATGCTG
GGAGACGCCCCGGTCAACGAAGGGGGGGGCTCCTCGTACAGCGCGGGGTA
TTCGATGGTGGCGCCTCCGGGGAGGAGCCGGCCCGCCGCGGCAACTCGAG
GGGGGGCGAGAACGGCCGCCTTCCAAGGCTCTTGGTTCTCCTGCCTGATG
CCACCGGGCATGCTGGGAGACGCCCCGGTCAACGAAGGGGGGGGCTCCTC
GTACAGCGCGGGGTATTCGATGGTGGCGCCTCCGGGGAGGAGCCGGCCCG
CCGCGGCAACTCGAGGGGGGGCGAGAACGGCCGCCTTCCAAGGCTCGGGC
ATGTCCCTGGCGGGGTCTAGCGGCGGGGGGTCCACGGCCACGATCGGCAG
CAACGGCGGTAGCGTCGGAGGAGCGGGGACGGGGCGAGAAAGCGAACTGT
CGGACAGGAGAGAGCGTATGCGCATGGCGGCGTTGCGACGAGCGGAGGCG
GCGGCGGCGGCGGCGACTTCGGCGGGGGCCGCTGCCGCTGGCGGCGGGAG
CAGCAGCAACAGCAACCACAGTAACGCGTCCATTGCCGCGGGTGCCTCGA
GCCTTAAGATCTCATGAGCTCGGGCATGTCCCTGGCGGGGTCTAGCGGCG
GGGGGTCCACGGCCACGATCGGCAGCAACGGCGGTAGCGTCGGAGGAGCG
GGGACGGGGCGAGAAAGCGAACTGTCGGACAGGAGAGAGCGTATGCGCAT
GGCGGCGTTGCGACGAGCGGAGGCGGCGGCGGCGGCGGCGACTTCGGCGG
GGGCCGCTGCCGCTGGCGGCGGGAGCAGCAGCAACAGCAACCACAGTAAC
GCGTCCATTGCCGCGGGTGCCTCGAGCCTTAAGATCTCATGA
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