mRNA_H-canaliculatus_F_contig1536.3970.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1536.3970.1
Unique NamemRNA_H-canaliculatus_F_contig1536.3970.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1536.3970.1 vs. uniprot
Match: A0A6H5L457_9PHAE (zf-Tim10_DDP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L457_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 4.760e-51
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 1 
Query:    1 MTPIQQQDFMQHLEKQQRRDSLAMYNNLVFRCFDECSKSFRSKRLDDGETKCINVCAEKFIKLTSRVALRFQDIQQQKAKDEAA 252
            MTP+QQQDF+QHLE QQR+DSLAMYNNLVFRCFDECSKSFRSKRLDDGETKCINVCAEK+IKLTSRVALRFQDIQQQKAKDEAA
Sbjct:    1 MTPVQQQDFLQHLESQQRKDSLAMYNNLVFRCFDECSKSFRSKRLDDGETKCINVCAEKYIKLTSRVALRFQDIQQQKAKDEAA 84
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BLAST of mRNA_H-canaliculatus_F_contig1536.3970.1 vs. uniprot
Match: A0A024TE29_9STRA (zf-Tim10_DDP domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TE29_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 8.760e-22
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    1 MTPIQQQDFMQHLEKQQRRDSLAMYNNLVFRCFDECSKSFRSKRLDDGETKCINVCAEKFIKLTSRVALRFQDIQQ 228
            + P QQQ+ M+H E++Q  +SL +YN +V  CF+EC +SFRSK+L+D E  C+N+CAEKF+K T RV +RF + QQ
Sbjct:    7 LPPHQQQELMKHFEQKQLEESLMLYNRVVATCFNECVQSFRSKKLEDKEENCMNLCAEKFLKHTQRVGVRFAEAQQ 82
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BLAST of mRNA_H-canaliculatus_F_contig1536.3970.1 vs. uniprot
Match: A0A1E7F1Y1_9STRA (Mitochondrial import inner membrane translocase subunit Tim9 (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F1Y1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.380e-21
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:    1 MTPIQQQDFMQHLEKQQRRDSLAMYNNLVFRCFDECSKSFRSKRLDDGETKCINVCAEKFIKLTSRVALRFQD 219
            + P +QQ+FMQHLE+ Q +DSL+MYN LV RCFD C  SFRSK LD  E  C+  C+ ++IK+T RV LRF +
Sbjct:    7 LPPYKQQEFMQHLEQMQLKDSLSMYNRLVERCFDGCVSSFRSKTLDKSEISCMENCSGRYIKMTQRVGLRFAE 79
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BLAST of mRNA_H-canaliculatus_F_contig1536.3970.1 vs. uniprot
Match: B7G5E1_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5E1_PHATC)

HSP 1 Score: 89.7 bits (221), Expect = 1.390e-21
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    1 MTPIQQQDFMQHLEKQQRRDSLAMYNNLVFRCFDECSKSFRSKRLDDGETKCINVCAEKFIKLTSRVALRFQDIQQQKAK 240
            + P QQQ FM+ +E  Q +DSL+MYNNLV RCFD C  SFRSK LD  E  CI  CA++++K+T RV LRF + Q  + K
Sbjct:    7 LAPHQQQAFMKEMEHMQLKDSLSMYNNLVGRCFDGCVTSFRSKTLDKSEISCIEHCADRYVKMTQRVGLRFAEHQAMQQK 86
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BLAST of mRNA_H-canaliculatus_F_contig1536.3970.1 vs. uniprot
Match: W4FPA0_9STRA (zf-Tim10_DDP domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPA0_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.960e-19
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    1 MTPIQQQDFMQHLEKQQRRDSLAMYNNLVFRCFDECSKSFRSKRLDDGETKCINVCAEKFIKLTSRVALRFQDIQQ 228
            + P QQQ+ M+H E++Q  +SL +YN +V  CF+EC +SFRSK+L+D E  C+N+CAEKF+K T RV +RF + QQ
Sbjct:    7 LPPHQQQELMKHFEQKQLEESLMLYNRVVATCFNECVQSFRSKKLEDKEVNCMNLCAEKFLKHTQRVGVRFAEAQQ 82
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BLAST of mRNA_H-canaliculatus_F_contig1536.3970.1 vs. uniprot
Match: A0A1Y1IU56_KLENI (Mitochondrial import inner membrane translocon protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IU56_KLENI)

HSP 1 Score: 77.4 bits (189), Expect = 9.590e-17
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:   31 QHLEKQQRRDSLAMYNNLVFRCFDECSKSFRSKRLDDGETKCINVCAEKFIKLTSRVALRFQDI 222
            Q +E+ Q RDSL MYNNLV +CF  C  +FR K LD  E KCI  CAEKF+K T+RV++RF ++
Sbjct:   19 QMVEQMQMRDSLRMYNNLVEKCFSNCVDTFRRKTLDKDEDKCIRRCAEKFLKHTARVSMRFAEL 82
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BLAST of mRNA_H-canaliculatus_F_contig1536.3970.1 vs. uniprot
Match: A0A835WK89_9CHLO (zf-Tim10_DDP domain-containing protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A835WK89_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 1.920e-16
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:   37 LEKQQRRDSLAMYNNLVFRCFDECSKSFRSKRLDDGETKCINVCAEKFIKLTSRVALRFQDI-QQQKAKDEAAAGAQG 267
            LE+ Q RDSL MYN LV RCF EC +  RSK L   E +C++ C EKF+ +T+RV +RFQ+   Q + +  AAAGA G
Sbjct:   23 LEQMQVRDSLKMYNKLVERCFKECVEDMRSKALTGKEEQCVSKCCEKFMHVTARVGMRFQEFFSQMEQQAAAAAGAAG 100
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BLAST of mRNA_H-canaliculatus_F_contig1536.3970.1 vs. uniprot
Match: B8LM74_PICSI (zf-Tim10_DDP domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LM74_PICSI)

HSP 1 Score: 75.1 bits (183), Expect = 8.450e-16
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:   16 QQDFMQHLEKQQRRDSLAMYNNLVFRCFDECSKSFRSKRLDDGETKCINVCAEKFIKLTSRVALRFQDIQQ 228
            QQ   + +E+ Q RDSL MYN+LV RCFD C  SFR K LD  E  C+  CAEKF+K + RV++RF ++ Q
Sbjct:   17 QQRMTKMIEQFQIRDSLRMYNSLVERCFDHCVDSFRRKSLDKQEETCVQRCAEKFLKHSMRVSMRFAELNQ 87
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BLAST of mRNA_H-canaliculatus_F_contig1536.3970.1 vs. uniprot
Match: A0A835YJ17_9CHLO (zf-Tim10_DDP domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YJ17_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 1.100e-15
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:   37 LEKQQRRDSLAMYNNLVFRCFDECSKSFRSKRLDDGETKCINVCAEKFIKLTSRVALRFQDI--QQQKAKDEAAAGAQG 267
            LE+ Q RDSL MYN+LV RCF EC +  RSK L   E +C+  C EKF+ +T+RV +RFQ+   Q ++   + AA AQG
Sbjct:   23 LEQMQVRDSLKMYNSLVERCFKECVEDMRSKALTGKEEQCVAKCCEKFMHVTARVGMRFQEFFTQMEQQAAQQAAAAQG 101
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BLAST of mRNA_H-canaliculatus_F_contig1536.3970.1 vs. uniprot
Match: TIM9_MESCR (Mitochondrial import inner membrane translocase subunit Tim9 n=3 Tax=Caryophyllales TaxID=3524 RepID=TIM9_MESCR)

HSP 1 Score: 74.7 bits (182), Expect = 1.200e-15
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   37 LEKQQRRDSLAMYNNLVFRCFDECSKSFRSKRLDDGETKCINVCAEKFIKLTSRVALRFQDIQQ 228
            +E+ Q RDSL MYNNLV RCF +C  SFR K LD  E  C+  CAEKF+K + RV LRF ++ Q
Sbjct:   24 IEQLQIRDSLRMYNNLVERCFTDCVDSFRRKTLDKQEETCVKRCAEKFLKHSMRVGLRFAELNQ 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1536.3970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L457_9PHAE4.760e-5194.05zf-Tim10_DDP domain-containing protein n=2 Tax=Ect... [more]
A0A024TE29_9STRA8.760e-2252.63zf-Tim10_DDP domain-containing protein n=4 Tax=Aph... [more]
A0A1E7F1Y1_9STRA1.380e-2156.16Mitochondrial import inner membrane translocase su... [more]
B7G5E1_PHATC1.390e-2153.75Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
W4FPA0_9STRA2.960e-1952.63zf-Tim10_DDP domain-containing protein n=2 Tax=Aph... [more]
A0A1Y1IU56_KLENI9.590e-1756.25Mitochondrial import inner membrane translocon pro... [more]
A0A835WK89_9CHLO1.920e-1651.28zf-Tim10_DDP domain-containing protein n=2 Tax=Chl... [more]
B8LM74_PICSI8.450e-1652.11zf-Tim10_DDP domain-containing protein n=1 Tax=Pic... [more]
A0A835YJ17_9CHLO1.100e-1549.37zf-Tim10_DDP domain-containing protein n=1 Tax=Eda... [more]
TIM9_MESCR1.200e-1556.25Mitochondrial import inner membrane translocase su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1536contigH-canaliculatus_F_contig1536:13599..14807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue8.1e-39
Seed eggNOG ortholog2880.D7G6I8
Preferred nameTIMM9
KEGG koko:K17777,ko:K17779
KEGG TC3.A.8.1
GOsGO:0000003,GO:0001666,GO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007155,GO:0007160,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008270,GO:0008320,GO:0008565,GO:0009628,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0022610,GO:0022804,GO:0022857,GO:0022884,GO:0031090,GO:0031224,GO:0031589,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0036293,GO:0036294,GO:0040008,GO:0040014,GO:0042221,GO:0042719,GO:0042721,GO:0042802,GO:0042803,GO:0042886,GO:0042887,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0046983,GO:0048638,GO:0050789,GO:0050793,GO:0050877,GO:0050896,GO:0050954,GO:0051082,GO:0051087,GO:0051179,GO:0051234,GO:0051239,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0061024,GO:0065002,GO:0065007,GO:0070013,GO:0070482,GO:0070585,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072321,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990351,GO:1990542
EggNOG free text desc.chaperone-mediated protein transport
EggNOG OGsKOG3479@1,KOG3479@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial protein import TIM9.10 complex subunit, Tim9 homolog
Ec32 orthologEc-05_006340.1
Exons3
Model size270
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1536.3970.1prot_H-canaliculatus_F_contig1536.3970.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1536 13599..14807 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929273.4151535-CDS-H-canaliculatus_F_contig1536:13598..136491622929273.4151535-CDS-H-canaliculatus_F_contig1536:13598..13649Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 13599..13649 +
1696845745.595219-CDS-H-canaliculatus_F_contig1536:13598..136491696845745.595219-CDS-H-canaliculatus_F_contig1536:13598..13649Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 13599..13649 +
1622929273.433182-CDS-H-canaliculatus_F_contig1536:14293..143561622929273.433182-CDS-H-canaliculatus_F_contig1536:14293..14356Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 14294..14356 +
1696845745.6087103-CDS-H-canaliculatus_F_contig1536:14293..143561696845745.6087103-CDS-H-canaliculatus_F_contig1536:14293..14356Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 14294..14356 +
1622929273.4469974-CDS-H-canaliculatus_F_contig1536:14651..148071622929273.4469974-CDS-H-canaliculatus_F_contig1536:14651..14807Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 14652..14807 +
1696845745.6208463-CDS-H-canaliculatus_F_contig1536:14651..148071696845745.6208463-CDS-H-canaliculatus_F_contig1536:14651..14807Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 14652..14807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1536.3970.1

>prot_H-canaliculatus_F_contig1536.3970.1 ID=prot_H-canaliculatus_F_contig1536.3970.1|Name=mRNA_H-canaliculatus_F_contig1536.3970.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=90bp
MTPIQQQDFMQHLEKQQRRDSLAMYNNLVFRCFDECSKSFRSKRLDDGET
KCINVCAEKFIKLTSRVALRFQDIQQQKAKDEAAAGAQG*
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mRNA from alignment at H-canaliculatus_F_contig1536:13599..14807+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1536.3970.1 ID=mRNA_H-canaliculatus_F_contig1536.3970.1|Name=mRNA_H-canaliculatus_F_contig1536.3970.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1209bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1536:13599..14807+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACACCTATCCAACAGCAGGATTTCATGCAGCACCTGGAGAAGCAACA
GGTGAACGGAAGACGGCGCCCAAAAACATCAGCGTCCGGAGACTGCGTCA
ATATCGCTTTCCGACCGTTGCGGCAGACTGATGGGTATCTAAACACGACT
TCGTCGTCATGGGTGGTGCTCGCAAGACCCCCAAACATCGTGTAAGAGAG
CTGCGATCACGCTCGTTCAACCGCAATTTTTCGCGGGCCACACTCGTTCC
TGTCCGGAAGGGAAAGGAGGACGTTCCGTTCATCTCCTTCAGCTTTCTGC
GCATGGACCAAATTTTCCTCTGGAGGTGTTTCCCGCGAGGGCAGACCCTG
CGTGGCCAACGAGCTCGGAGCGCGAACGAGCAGACTTTGACTTCCAGTCA
CATCATAAGGTGGCGAGATGTTTGAGCAGGCCGTGTGCAGAAGATCAGGT
CTGCGCACCGTAGTTTGGCCTCCTTTTCCCGTGTGCCCTGGCTCGCGTCC
TCGAATAATCCGAACGGGGTTGAAGCCGGGGCCTTGGTAAGTGTGGCTCC
TATGGCATCGACACGCCAGCATCACGCCCCCTGCTCCCCCCCGCCCCCCC
CCCCCCCCCCCCCCCGCCTTGCTCGTGCCCCGTACCCCGTCGCGCATGCC
CTTCCGCCCGGACCGTTCATCCGGGGAATTTTATTTGCGGTGCAGAGGAG
AGACTCCCTGGCGATGTACAACAATCTTGTGTTCCGATGCTTCGACGAGT
GCTCGAAGGTAAGCAGCAGCTCTCGCCCACCCACCCGATCGCGGGCCGGG
TGTGTTAAGACATGACGCCCGCCGAGCGTGTTGGCCAGCGCCAAACTCGG
AAAGTGCGGTGGGGCGGCGATACCAACCGTACCCTAATTCGAGAGCGGGA
AATATAATATGGCGTTACCGAAGTATCCACGTGGCTCATCGCTTCGAGTA
GCAGCACTTGATCGTGGGGGCCCCAGGTAATCCACACCATGAAACAAACC
TCGTGTGGTTGTGCACTGTTTTCTCATGAACACCCTGGCCGCCCCTTTCT
CAGAGCTTCCGAAGCAAGCGACTAGACGACGGGGAGACGAAGTGCATCAA
CGTTTGCGCGGAAAAGTTCATCAAGCTCACCAGCAGGGTAGCGCTGCGAT
TTCAGGACATCCAGCAACAGAAAGCCAAGGATGAGGCGGCGGCAGGGGCA
CAAGGCTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1536:13599..14807+

>mRNA_H-canaliculatus_F_contig1536.3970.1 ID=mRNA_H-canaliculatus_F_contig1536.3970.1|Name=mRNA_H-canaliculatus_F_contig1536.3970.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1536:13599..14807+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACACCTATCCAACAGCAGGATTTCATGCAGCACCTGGAGAAGCAACA
GATGACACCTATCCAACAGCAGGATTTCATGCAGCACCTGGAGAAGCAAC
AGAGGAGAGACTCCCTGGCGATGTACAACAATCTTGTGTTCCGATGCTTC
GACGAGTGCTCGAAGAGGAGAGACTCCCTGGCGATGTACAACAATCTTGT
GTTCCGATGCTTCGACGAGTGCTCGAAGAGCTTCCGAAGCAAGCGACTAG
ACGACGGGGAGACGAAGTGCATCAACGTTTGCGCGGAAAAGTTCATCAAG
CTCACCAGCAGGGTAGCGCTGCGATTTCAGGACATCCAGCAACAGAAAGC
CAAGGATGAGGCGGCGGCAGGGGCACAAGGCTAAAGCTTCCGAAGCAAGC
GACTAGACGACGGGGAGACGAAGTGCATCAACGTTTGCGCGGAAAAGTTC
ATCAAGCTCACCAGCAGGGTAGCGCTGCGATTTCAGGACATCCAGCAACA
GAAAGCCAAGGATGAGGCGGCGGCAGGGGCACAAGGCTAA
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