mRNA_H-canaliculatus_F_contig1536.3969.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1536.3969.1
Unique NamemRNA_H-canaliculatus_F_contig1536.3969.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1536.3969.1 vs. uniprot
Match: D7G6I9_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6I9_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 1.050e-117
Identity = 194/223 (87.00%), Postives = 208/223 (93.27%), Query Frame = 1 
Query:    1 MEALRREAHRLEADLEVKTQAYARLSQRMNSDILYDAEDPVDGTQEQLLAGEIDQLLSTLGECNERMGVQVAKGARKADSAMLQRYREILFDFSTEFKKTSAALQRKRETTELFKSSRPDRAGA-GHGDLEQEHLLREQNAIHSSLQSATGVLGQAAEARESLRHQRAILGTASSTLSFMQNRFPAINRVVEAIQKKKAKDRVIIAAVIAGCIVFSLWFKGFL 666
            MEALRREAHRLEADLEVKTQ+Y+RL+QR+NSDILYDAEDPVD TQEQLLAGEID+LLS LG+CNERMG +VAKGARKADSAMLQRYREILFDFSTEFKKTSAALQRKR+TTELFKSSR DR G  G GD EQEHLLREQNAIH+SLQSATGVLGQAAEARESLRHQRA LG ASSTLS MQNRFPAINRVVEAIQKKKAKDR+IIAAV+A CI F+ W+KG+L
Sbjct:    1 MEALRREAHRLEADLEVKTQSYSRLAQRVNSDILYDAEDPVDSTQEQLLAGEIDELLSALGDCNERMGAKVAKGARKADSAMLQRYREILFDFSTEFKKTSAALQRKRDTTELFKSSRADRGGGDGTGDFEQEHLLREQNAIHNSLQSATGVLGQAAEARESLRHQRATLGAASSTLSSMQNRFPAINRVVEAIQKKKAKDRLIIAAVMAACIFFTFWYKGWL 223
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BLAST of mRNA_H-canaliculatus_F_contig1536.3969.1 vs. uniprot
Match: A0A6S9HNZ6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HNZ6_HETAK)

HSP 1 Score: 197 bits (500), Expect = 2.330e-54
Identity = 116/230 (50.43%), Postives = 157/230 (68.26%), Query Frame = 1 
Query:    4 EALRREAHRLEADLEVKTQAYARLSQRMNSDILY---DAEDPVDGTQEQLLAGEIDQLLSTLGECNERMGVQVAKGARKADSAMLQRYREILFDFSTEFKKTSAALQRKRETTELFKSSRPDRAGAGHG----------DLEQEHLLREQNAIHSSLQSATGVLGQAAEARESLRHQRAILGTASSTLSFMQNRFPAINRVVEAIQKKKAKDRVIIAAVIAGCIVFSLWF 654
            E+LRREA RLE+ LE K Q+Y+RL+QR+N+DILY   ++   +D  +EQ LA +I+ LLS L +CNE+M   V  G+R A+SA+LQRYREILFD++TEFK TS A+QRKRE+ ELF+S+R       HG          D   EHLLRE+NAI  +++++  V+GQA   R+ LR Q A L   S TL+ + +  P+I RVVEAIQKKK +D +I+  VIA  I F+LW+
Sbjct:    7 ESLRREARRLESSLEDKIQSYSRLAQRLNTDILYQDVESSPSLDNHEEQSLAVDIEHLLSALSDCNEKMNACVTAGSRTANSALLQRYREILFDYTTEFKNTSVAIQRKRESQELFRSAR-------HGGXXXXXXAARDPAMEHLLRERNAIGGAMRASNSVIGQAFATRDELRAQGATLQGTSGTLAGITSNLPSIGRVVEAIQKKKYRDNMIVGGVIALLICFTLWY 229
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BLAST of mRNA_H-canaliculatus_F_contig1536.3969.1 vs. uniprot
Match: A0A7S2CM06_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CM06_9STRA)

HSP 1 Score: 175 bits (443), Expect = 2.490e-46
Identity = 100/219 (45.66%), Postives = 147/219 (67.12%), Query Frame = 1 
Query:    4 EALRREAHRLEADLEVKTQAYARLSQRMNSDILYDAEDPV-DGTQEQLLAGEIDQLLSTLGECNERMGVQVAKGARKADSAMLQRYREILFDFSTEFKKTSAALQRKRETTELFKSSRPDR-AGAGHGDLEQEHLLREQNAIHSSLQSATGVLGQAAEARESLRHQRAILGTASSTLSFMQNRFPAINRVVEAIQKKKAKDRVIIAAVIAGCIVFSLWF 654
            E+LRR+A ++E  LE K   Y+RL+QR +SD+LYD E+P+ +G +EQ LA EI+ LLS L ECNERM   V+   R A +A+LQRYREI FD+  +F +T+ A+ R RE  +LF+ ++  R  G    D    HL RE+ AI+SSL+SA+ V+GQA E R +L  QR  L  A  TL  + + +P+I RV+ +IQ+++ +D +++  VI+ CI F+LW+
Sbjct:   14 ESLRRQAKKIEGLLEEKVSGYSRLAQRNHSDMLYDEENPLMEGHEEQALAIEIENLLSGLSECNERMSQCVSTVPRTASAALLQRYREIYFDYKRDFDETACAILRTREQVQLFRGTQVQRNKGTERDDTGMNHLYREEEAINSSLRSASNVIGQADEVRGALWSQRNTLTLAGGTLGQLSSAYPSIGRVIVSIQQRRYRDNMVVGLVISVCICFTLWW 232
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BLAST of mRNA_H-canaliculatus_F_contig1536.3969.1 vs. uniprot
Match: A0A7S1XU31_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU31_9STRA)

HSP 1 Score: 163 bits (413), Expect = 3.300e-42
Identity = 95/225 (42.22%), Postives = 151/225 (67.11%), Query Frame = 1 
Query:   10 LRREAHRLEADLEVKTQAYARLSQRMNS--DILY--DAEDPVDGTQEQ-LLAGEIDQLLSTLGECNERMGVQVAKGARKADSAMLQRYREILFDFSTEFKKTSAALQRKRETTELFKSS-RPDRAGAGHGD----LEQEHLLREQNAIHSSLQSATGVLGQAAEARESLRHQRAILGTASSTLSFMQNRFPAINRVVEAIQKKKAKDRVIIAAVIAGCIVFSLWF 654
            LR EA +LE  LE K QAY+RL+QR ++  D L+  D E P+ GT+E+ ++A  I++LL+ L +CNERM   V  G+R A +A+L+RYREILFD+ +EF+K S+ + +K+E  +L     R    GAG GD    +   HL  EQN+I+SS+ +A   L QA+ AR+SLR QR +L  A  TL  + ++FPA+N+++E+I++++ ++ V++   I+ C+ F++W+
Sbjct:    7 LRGEARKLEMQLEDKVQAYSRLAQRFSARQDSLFGDDVESPMLGTEEEEVMARGIEKLLTDLADCNERMSQVVTSGSRAASAALLKRYREILFDYKSEFRKLSSTIAKKKERADLLSGGGRGGGIGAG-GDGGDGVGMRHLYAEQNSINSSMHTAGQTLDQASGARDSLRRQREMLSGAGGTLQDLASQFPAVNQIIESIRRRRTRENVVMGLAISSCVCFTIWY 230
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BLAST of mRNA_H-canaliculatus_F_contig1536.3969.1 vs. uniprot
Match: A0A4D9D8W2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8W2_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.420e-40
Identity = 93/222 (41.89%), Postives = 141/222 (63.51%), Query Frame = 1 
Query:   10 LRREAHRLEADLEVKTQAYARLSQRMNSDILYDAEDPVDGTQEQL-LAGEIDQLLSTLGECNERMGVQVAKGARKADSAMLQRYREILFDFSTEFKKTSAALQRKRETTELF------KSSRPDRAGAGHGDLEQEHLLREQNAIHSSLQSATGVLGQAAEARESLRHQRAILGTASSTLSFMQNRFPAINRVVEAIQKKKAKDRVIIAAVIAGCIVFSLWF 654
            L+R+   +E  LE K   ++ ++Q  N D  +D E+P+    E+L +  EI+ LL+ L +CNE MG  +A GAR + SA+LQRYREIL  ++ +F+K+   LQRKRETTEL       K +   + GA  G+ + + LLRE+NAIHSSL+    +L QA E ++ LR QR  L  A++ L+ + N  P+I+RVV+AIQ+ K +D +II  + A C+ F++W+
Sbjct:   31 LKRKVRGIENKLEGKCHTFSLMAQSSNVDTRHDEENPLLQDSEELNIVAEIESLLAALAKCNEAMGQMLAHGARPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETTELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANTGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWY 252
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BLAST of mRNA_H-canaliculatus_F_contig1536.3969.1 vs. uniprot
Match: A0A836CCE5_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCE5_9STRA)

HSP 1 Score: 142 bits (359), Expect = 7.630e-35
Identity = 92/225 (40.89%), Postives = 130/225 (57.78%), Query Frame = 1 
Query:   10 LRREAHRLEADLEVKTQAYARLSQRMNSD---------ILYDAEDPVDGTQEQLLAGEIDQLLSTLGECNERMGVQVAKGARKA-DSAMLQRYREILFDFSTEFKKTSAALQRKRETTELFKSSRPDRAGAGHGDLEQEHLLREQNAIHSSLQSATGVLGQAAEARESLRHQRAILGTASSTLSFMQNRFPAINRVVEAIQKKKAKDRVIIAAVIAGCIVFSLWF 654
            + REA R+E +L+ K Q+Y  LS+R+ +            YD E+P D   E  LA EID LLS L E  + M    A G R       ++RYR  L D   E+ + S+A+QR R+  ELF+  +  R  A   D + +HLLRE   I SSL+ A+ VLGQA EARESLR QR  L   ++TL  + + FP I R+V+ I +++ +D +I+A V+A CI F+LW+
Sbjct:    8 INREALRIEGNLKAKVQSYWDLSKRLEATDGATRNGVASSYDLENPADNMAEAGLAREIDHLLSQLTEMLDAMAA--APGLRTIPQQEQMKRYRVNLIDSRAEYNRASSAIQRHRDANELFRGRQARRHKAEGADADTDHLLRESQYIGSSLRGASNVLGQAHEARESLRQQRETLSRTNATLGALTSAFPGIGRIVDQIGRRRTRDNMIVATVLALCICFTLWW 230
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BLAST of mRNA_H-canaliculatus_F_contig1536.3969.1 vs. uniprot
Match: A0A7S1BGG8_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BGG8_9STRA)

HSP 1 Score: 138 bits (347), Expect = 5.570e-33
Identity = 88/229 (38.43%), Postives = 130/229 (56.77%), Query Frame = 1 
Query:   10 LRREAHRLEADLEVKTQAYARLSQRMNSDILYDAEDPVDGTQEQLLAGEIDQLLS--------------TLGECNERMGVQVAKGARKADSAMLQRYREILFDFSTEFKKTSAALQRKRETTELFKSSRPDRAGAGHGDLEQEHLLREQNAIHSSLQSATGVLGQAAEARESLRHQRAILGTASSTLSFMQNRFPAINRVVEAIQKKKAKDRVIIAAVIAGCIVFSLWF 654
            L+REA RLE  +E K   Y +LSQR++          +D     LL G++  +                 + E N+RM     +  R   + +++RYREIL+D+ST+FKK    L RKR+  ELF++ R   A    GD   +HLLRE+ AI +SL SAT V+GQA E    LR QR +L   S T++ +    P +NR+++AI+KKK KD +II+ VIA C++F++W+
Sbjct:   28 LKREATRLERHIEEKVGRYQQLSQRLSR---APPASHLDAESGSLLEGDVAAVXXXXXXXXXXXXXXXXAMSERNDRMAAVAERSQRDQQTLLVRRYREILYDYSTDFKKIRGNLARKRDEAELFRT-RSGTAKKEAGDEGMDHLLREKRAIGNSLLSATSVIGQAREIHGDLRTQRKMLHGVSGTVAGLTANVPGVNRLIDAIRKKKNKDNLIISGVIAACVLFTMWY 252
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BLAST of mRNA_H-canaliculatus_F_contig1536.3969.1 vs. uniprot
Match: W2K0X8_PHYPR (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2K0X8_PHYPR)

HSP 1 Score: 133 bits (334), Expect = 1.740e-31
Identity = 86/221 (38.91%), Postives = 131/221 (59.28%), Query Frame = 1 
Query:    4 EALRREAHRLEADLEVKTQAYARLS--QRMNSDILYDAEDPVDGT-QEQLLAGEIDQLLSTLGECNERMGVQVAKGARKADSAMLQRYREILFDFSTEFKKTSAALQRKRETTELFKSSRPDRAGAGHGD-LEQEHLLREQNAIHSSLQSATGVLGQAAEARESLRHQRAILGTASSTLSFMQNRFPAINRVVEAIQKKKAKDRVIIAAVIAGCIVFSLWF 654
            E LR  A   E  LE K  AY  +S  Q  +S  +YD E+P + T  E+ LA +I+  L++L +  + M V V K + K   AMLQRYRE+ FDF+TEF+++ +ALQ KR+  +LF     +RA  GH D  E + LL E+ A+ SS    + ++ QA   + +L +QR    ++   ++ + + F  IN +VE I++KK ++  I+A VIAGCI F+LW+
Sbjct:   10 EELRSSARAAEHTLEDKIAAYTAVSRAQTRSSSAVYDEENPPEETADERELAVDIENALASLSDTIDEMNVVVNKTSVKTQDAMLQRYREVYFDFNTEFRRSMSALQEKRDVQKLF----GNRAHTGHSDDAEMDSLLNERRAVDSSRSMTSSIIEQAMATKNALENQRRQFTSSHGKVATLGSSFAGINTLVEQIRRKKMRNNTILALVIAGCICFTLWW 226
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BLAST of mRNA_H-canaliculatus_F_contig1536.3969.1 vs. uniprot
Match: A0A7S1D086_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D086_CYCTE)

HSP 1 Score: 131 bits (330), Expect = 5.830e-31
Identity = 79/224 (35.27%), Postives = 135/224 (60.27%), Query Frame = 1 
Query:    4 EALRREAHRLEADLEVKTQAYARLSQRM------NSDILYDAEDPVDGTQEQLLAGEIDQLLSTLGECNE-RMGVQVAKGARKADSAMLQRYREILFDFSTEFKKTSAALQRKRETTELFKSSRPDRAGAGHGDLEQEHLLREQNAIHSSLQSATGVLGQAAEARESLRHQRAILGTASSTLSFMQNRFPAINRVVEAIQKKKAKDRVIIAAVIAGCIVFSLWF 654
            + LRREA +LE  LE +   Y +LSQ++      +  +++  E+     +E  L  +I + LSTL +  + ++     +  +     M++RYREILFD +++F+KTS  +QRK++  ELF+ +    +G    D   E LLRE+N I++SL +++ V+ QA+E    L+ Q   L   + TL  + ++ P +NR++E I++KKA+D +I++ VIA CIVF+LW+
Sbjct:    5 DVLRREATKLERHLEERVSRYQQLSQKLAAVDGKSDSLMHSLENGTHLDEETSLRNDIQRTLSTLQDLIQTKLSPAAEQSGKSQHMLMVKRYREILFDLTSDFQKTSTQIQRKKQQFELFQGANMSGSGQDENDPAMEQLLRERNHINNSLTASSSVIAQASEIHSDLKSQGMSLRGVTGTLVKITSQVPGLNRLMENIRRKKARDDLIVSIVIALCIVFTLWY 228
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BLAST of mRNA_H-canaliculatus_F_contig1536.3969.1 vs. uniprot
Match: A0A7S2XVV4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVV4_9STRA)

HSP 1 Score: 127 bits (320), Expect = 9.900e-31
Identity = 73/115 (63.48%), Postives = 89/115 (77.39%), Query Frame = 1 
Query:    4 EALRREAHRLEADLEVKTQAYARLSQRMNSDILYDAEDPVDGTQEQ-LLAGEIDQLLSTLGECNERMGVQVAKGARKADSAMLQRYREILFDFSTEFKKTSAALQRKRETTELFK 345
            E LRREA RLE  LE   Q+Y+RLSQRMNSD+LY+   P+  +QE+  LA EI+ LLS L +CNE+M   V +GA  A SA+LQRYREILFD+STEFKKTSAA+QRKR+T ELF+
Sbjct:   25 EDLRREARRLEGSLEEVVQSYSRLSQRMNSDLLYEDGMPLMESQEEHSLAMEIEHLLSALSDCNEKMNACVQRGAPAASSALLQRYREILFDYSTEFKKTSAAIQRKRQTDELFR 139
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1536.3969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6I9_ECTSI1.050e-11787.00Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A6S9HNZ6_HETAK2.330e-5450.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2CM06_9STRA2.490e-4645.66Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1XU31_9STRA3.300e-4242.22Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A4D9D8W2_9STRA1.420e-4041.89Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A836CCE5_9STRA7.630e-3540.89Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A7S1BGG8_9STRA5.570e-3338.43Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
W2K0X8_PHYPR1.740e-3138.91Uncharacterized protein n=16 Tax=Phytophthora TaxI... [more]
A0A7S1D086_CYCTE5.830e-3135.27Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2XVV4_9STRA9.900e-3163.48Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1536contigH-canaliculatus_F_contig1536:4389..11080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score367.1
Seed ortholog evalue5.9e-99
Seed eggNOG ortholog2880.D7G6I9
Preferred nameGOSR1
KEGG koko:K08495
KEGG Pathwayko04130,map04130
GOsGO:0000138,GO:0000139,GO:0000149,GO:0001101,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005794,GO:0005795,GO:0005797,GO:0005801,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006906,GO:0006996,GO:0008104,GO:0008150,GO:0009719,GO:0009725,GO:0009737,GO:0009987,GO:0010033,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0030133,GO:0031090,GO:0031201,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032879,GO:0032991,GO:0033036,GO:0033993,GO:0034613,GO:0042147,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048209,GO:0048284,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060341,GO:0060627,GO:0061024,GO:0061025,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097305,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:1901700
EggNOG free text desc.regulation of vesicle targeting, to, from or within Golgi
EggNOG OGsKOG3208@1,KOG3208@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-05_006350.1
Exons8
Model size2352
Cds size669
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929273.2152567-UTR-H-canaliculatus_F_contig1536:4388..60711622929273.2152567-UTR-H-canaliculatus_F_contig1536:4388..6071Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1536 4389..6071 -
1696845745.4499207-UTR-H-canaliculatus_F_contig1536:4388..60711696845745.4499207-UTR-H-canaliculatus_F_contig1536:4388..6071Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1536 4389..6071 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929273.228194-CDS-H-canaliculatus_F_contig1536:6071..62001622929273.228194-CDS-H-canaliculatus_F_contig1536:6071..6200Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 6072..6200 -
1696845745.4879634-CDS-H-canaliculatus_F_contig1536:6071..62001696845745.4879634-CDS-H-canaliculatus_F_contig1536:6071..6200Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 6072..6200 -
1622929273.2464774-CDS-H-canaliculatus_F_contig1536:6709..67911622929273.2464774-CDS-H-canaliculatus_F_contig1536:6709..6791Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 6710..6791 -
1696845745.4983912-CDS-H-canaliculatus_F_contig1536:6709..67911696845745.4983912-CDS-H-canaliculatus_F_contig1536:6709..6791Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 6710..6791 -
1622929273.2636993-CDS-H-canaliculatus_F_contig1536:7122..72271622929273.2636993-CDS-H-canaliculatus_F_contig1536:7122..7227Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 7123..7227 -
1696845745.508243-CDS-H-canaliculatus_F_contig1536:7122..72271696845745.508243-CDS-H-canaliculatus_F_contig1536:7122..7227Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 7123..7227 -
1622929273.2830331-CDS-H-canaliculatus_F_contig1536:7644..77431622929273.2830331-CDS-H-canaliculatus_F_contig1536:7644..7743Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 7645..7743 -
1696845745.5172446-CDS-H-canaliculatus_F_contig1536:7644..77431696845745.5172446-CDS-H-canaliculatus_F_contig1536:7644..7743Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 7645..7743 -
1622929273.3036394-CDS-H-canaliculatus_F_contig1536:8618..86951622929273.3036394-CDS-H-canaliculatus_F_contig1536:8618..8695Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 8619..8695 -
1696845745.5258453-CDS-H-canaliculatus_F_contig1536:8618..86951696845745.5258453-CDS-H-canaliculatus_F_contig1536:8618..8695Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 8619..8695 -
1622929273.3256738-CDS-H-canaliculatus_F_contig1536:9254..93191622929273.3256738-CDS-H-canaliculatus_F_contig1536:9254..9319Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 9255..9319 -
1696845745.5580485-CDS-H-canaliculatus_F_contig1536:9254..93191696845745.5580485-CDS-H-canaliculatus_F_contig1536:9254..9319Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 9255..9319 -
1622929273.3481913-CDS-H-canaliculatus_F_contig1536:9560..96241622929273.3481913-CDS-H-canaliculatus_F_contig1536:9560..9624Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 9561..9624 -
1696845745.57112-CDS-H-canaliculatus_F_contig1536:9560..96241696845745.57112-CDS-H-canaliculatus_F_contig1536:9560..9624Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 9561..9624 -
1622929273.3727107-CDS-H-canaliculatus_F_contig1536:11032..110801622929273.3727107-CDS-H-canaliculatus_F_contig1536:11032..11080Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 11033..11080 -
1696845745.5817456-CDS-H-canaliculatus_F_contig1536:11032..110801696845745.5817456-CDS-H-canaliculatus_F_contig1536:11032..11080Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1536 11033..11080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1536.3969.1prot_H-canaliculatus_F_contig1536.3969.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1536 6072..11080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1536.3969.1

>prot_H-canaliculatus_F_contig1536.3969.1 ID=prot_H-canaliculatus_F_contig1536.3969.1|Name=mRNA_H-canaliculatus_F_contig1536.3969.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=223bp
MEALRREAHRLEADLEVKTQAYARLSQRMNSDILYDAEDPVDGTQEQLLA
GEIDQLLSTLGECNERMGVQVAKGARKADSAMLQRYREILFDFSTEFKKT
SAALQRKRETTELFKSSRPDRAGAGHGDLEQEHLLREQNAIHSSLQSATG
VLGQAAEARESLRHQRAILGTASSTLSFMQNRFPAINRVVEAIQKKKAKD
RVIIAAVIAGCIVFSLWFKGFL*
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mRNA from alignment at H-canaliculatus_F_contig1536:4389..11080-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1536.3969.1 ID=mRNA_H-canaliculatus_F_contig1536.3969.1|Name=mRNA_H-canaliculatus_F_contig1536.3969.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6692bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1536:4389..11080- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAAGCTCTTCGACGAGAAGCGCACCGGCTGGAGGCCGACCTGGAGGT
GAGTCGTGATTCCAGAAGAACACAGCTTCATCAGCATTTCCTTCCCAAAA
GTCCGCCGGACCTGACAGTCCTTTTCTCCCCCTCGAGTTACTTCCGAAGG
AGCTACAGCAGCATTATTCAAGGTCTCGATGGCATGGTGGTCCAGTTCTT
ACCCTTGCTTGTGTGGCCAAAAAAAACTGCGTGGGTTGATGACTGTGTAT
TGCGCGCTGCTGTCCGAAAGGCAGGGCACTGCAATTGCCGAGAAATGCAG
CATTATGTTTGCGTTGAATAGGCAAGGTCTACATATATAATCTTGGACGT
TGTTTGTGCCCCCACCGAATCCTCCGCACTTTTCGGCCTTGAGACGTATC
GTATACAAGCCGTAGCGAAAAATGCCGCCCCCGCCGCAGACGGGTAATAG
CACTCACGGCGCTGCTGATGCTATGAGAGACAACCAGCAGGGTATCCGAC
ACAGGTTCGTTTGGGCGTCCCAGACACAGCAGAGACTGTTGCTGAAACAG
CTGTCCTGCAGTGTTCTTCGCTGGCTTTTTTTGGACCAACGGGGTTCGGT
ATTAGAAGATCATCACAGCAGTATATCCCGTCCGTTCCCAGCCTGGGGCA
TGACTCTTCCACGGGGGGCTGAAAGCATCTCCGTCTCCCTCAATGTGACT
GCACGAACAAGAAAAAAAATCCCGCAGCCAGTCGGAGCGCCCGACCTACC
GCGCTCTAAAGCGCCCTGTGGCCGTTCTTACACGATTGTGGCACACGTCC
GCGGCAGCTGCAGCAGTCGCCGTAGTGGCGCCATCCACGATGGAACTCCG
GCCAACAAACATCTCAAGTGTTCAGATGACAGGTCACCCTTGCCTGTGGT
GGGTTGATCTCTCTGGTCCAACGAGATGCCTCACGACTTGTGCAGCATGC
CGGCGCACAAAGATGCTCACGGCACATCGAGCTCAGCCCCGCGGCTGTTC
TTGACGAAGTTGGCGAACACGTCTCGTTTGCCTGCTGGGGCCACGACGCC
ATCACGCCCGTTGTTGATCTCCACCAGTCGATGACGCTCTTGTCGCTGAC
GCTCTTGTTTCGGACGGCACGCCACACCCACGCCAGAAGTCGCCCCCTCC
CATGGTCTCGCTCGGGTGAGCCCTTCCGAGCGTGTTTATTGGAGGTCGGC
GTGGGACAGGTGTACGGCGGCGCACGTACCCTGCTTATCTGGAGCAAGCC
CACCGCCTGACCAATCTAGGATGTGCGCGTGGCCGGTATGGAGACGTGGG
TGCTTGCCTCGGGTGTGTCCTACCCCCTCTACCATCACCTACCCGTTGCT
CCAACATTTCCGAAACCTTACGATGACGGAAACTCCGTTTTTTTTGTGTC
CGTCTGCGTTTCTCTACCATGGTTTTCGTTCCGTGTGCCTTGTCGCTCCG
TAAAAGGTGAAAACCCAGGCGTACGCGCGGCTCTCCCAGCGGATGAACTC
AGATATCCTCTACGATGCAGGTGCGGTTGCGTCTGCTGGTTGGCTGAGCG
GTTTGCGTGAGAGTGCTGAGAGTTGCGATGGGGCACGAACAGAACTTTTT
AGGTGTCTTCCTTGCACGAGGCGTCCTAACAGCGAACGCGAGACAGCTCC
GACCCTCGTGGTCCAGAGAGAATTTCGGTTGACCTTGCGTGCGCGTCGTT
GTCGTCGCCTTCGTCCCCTTCGTCGTCCTCGTCGCCGTTGTTGTTGTCTT
CGCTCTCGCAGAGGATCCCGTTGACGGTACTCAGGAGCAGCTGCTGGCGG
GGGAGATCGACCAGCTCTTGTCCACTGTGAGTATATTTCTGCGGGTGTGT
GCCGTTTGCTTGCCGCGAGTGGTTCGGTCAGAGGAGGCGATGGACCTTGA
ACCTCACGTTTACATCCTGTTCGCGACTGACGTCTGACGCGTGTTGCACG
CTTTTACGAGCATCGTGCTTCAGCAAGCGATCCCTCGGCCGGTGCATCAA
GTCGTAGCATCGCAACCGCTGTGACAGAGTTAACAGAAACTGTGCGCATT
AACGATGGCCACACACCGGATGGGGAGTCAAAGTTCCAACTGTCCTGCAT
TGTTGTCCTCCGCGTACAAACCACGGGGAAGGGGTTTGCCTCTTGGATGG
AATTCCCCGTGACCCTCCTTTGCCTTTCTCTTTCGCCCGCCTCAGTTTCT
GCTTCTTGCCGGGACTTCCCTGTTTGAACCTGTCCTTCTTGCTGCTTCGT
TACGTGTCCAGTCGTTCCTCGAATGCTTGAACCCCTTTGCTTTCGGCAAG
CAGCGTGATTTCGTGACTCATGTTCTTGCTCTCATCCTGTTACCTGCCCG
CCAAAATCTCTGCGCTGATGACGCCACGACTTCAGCTTGGCGAGTGCAAC
GAGAGAATGGGCGTCCAGGTTGCGAAGGGAGCCCGAAAAGCAGACTCGGC
CATGCTGCAACGGTGAGAGAGAGCCCGATCACTTCTCGTGCTCCCATGTT
CGTCAGAATGTTTGGCCACATGTATCAGTTGCGCACGTCGGGCATGCCTT
CCTTGACGTGTCTCTTTTGGTTTCATTGCGCTGCGTGGCCTGTGTGAGGA
GAGCTTACGGTGGCGAGGGTGTTGGCCAGGGAGCAGGCGGCGACACAGCG
GGGAGGGGGGGGCGAGAAATGGAAGGGGTACTTGCGCCCGATGTGCCGCT
TTATGACACAGTTGTTCTTGAATTCCTGTGGGGAGCTTCGCCAGTGTGTG
GACTGCAAGGGGGTGTGCGCCTTAATTGCGTCGGTGAGTTTCTGAGTGCT
TGGTTGTTCGTCGGATTGCTGATAGCGTGCGGTTCGAGCTTGTCCCCCGG
GGACCTGCCTCAGAATGGCGCTTCGGCCGAAGGCGCAACTACTGTATTGT
GAATGACGTAGCGTACTGTTACGCGGCATTGCTCGCGGCGGGCACCCTTG
TTATTTATTTTCCCTCTATTTTCGACGTCCTTGTTCGTGCCGCTGTTGAT
GTTGTTGCCGTCCGTCCTGATGTCTCGGCCGTTGACGATGCCTGTACGAT
GCGGTCTCCTGTACGTCTTGTGCCCAGCGTTGCTGCCGTGGGCCCCGGTT
CCATGGGCTTGGACACTCTTCGTGTTGGCCAACGCCGGCACTTATCATCT
ACCGTCCTTCACGAGCCTCCCTTCTGCGGCTCTGTCTTGATACTACTGCT
ACAGCTACAGCTTTATCTACAGCAATATCTACAGCTACTGCTTGTGGTGG
TGGTGGCACTTCTGTCGCAGGACCTCCTTCACGGTTCCCTCTTACCGCAC
GCGCATGCGACATGTCTCCCGCGTGAAAAACTCTCAGGTATCGAGAGATC
CTGTTCGATTTCTCGACGGAGTTCAAGAAGACTTCGGCGGCATTGCAGCG
CAAGCGAGAGACAACGGAGCTGTTCAAGTCGTCGAGGTACTCATGTGATG
CGCCCAAAGTTCCTATTCTTGGGCTTGTGTCTGCGAATCCCCCCCTGACC
TTCGCTTGTGCTTGGACTGATTGGACTGGTCTTGCTCCCTGGCTCTTCGC
GTATCGCTGGTGACTTCGAGCGTGCTTTCTCCGGCCGCAGCAACATCCTT
GGGTCTCCCTTGGACAGCATCATCGTTTTCCCCGTTTCAGTGCTTCGCTT
TCTCACTTCCACCGCCACGGCCACGTGAAAAATACACTAGCTATGAAGTG
AAGTACCAAGCCGCTTTCTACCTGTTGCTCGTCTCGCAGTGAAGTTTCGC
AAAAGCAGTGGCTTTGATTTGAACAGAGTTGAGAAGTACGGAGTGCTTCG
AAGTACAACTTATTTCCCTCCGCATCTTTGCTTCCCGCTTCCGCCATGAA
CAGGCCCGATCGAGCGGGCGCAGGTCACGGGGACCTGGAGCAGGAGCATC
TTCTCCGAGAGCAAAACGCGATCCACAGCTCGCTGCAGAGCGCCACCGGC
GTGCTTGGGTGAGGCGACGCACCACTGGTTGCGGTCGTTCCGGTTTCGCC
TGTCGTGCTTCGGGCGTCTGGGCTCTGCCTTTTTCGCTAGGAGAGCTTCC
GAGATCTAGGTATCAAGGAGCTGCGCTTCGAACCTCTCGCCCCCACACAG
CAGTACGTTGTGAGTCTTGCTGCGTCTGTACACCTGTGCCAGGGCGAGTG
AGCAATGCTGTGAGTCGTGCCAACATCGATCGTTGCCTGCTTCGCGGAGG
CCGTTGCTGCTCGTTCTGTTGCCATTCTTGTCACCGATGCTCTACTTTTA
CTCTTAGATTTTTTTTCGTTGTTGTCGATGTGTCTCCAGGCAAGCCGCCG
AAGCGAGGGAAAGCTTGAGGCATCAGCGTGCCATACTGGGAACCGCATCC
TCTACATTATCGTTCATGCAGGTGCGGTGGATCGCACAAAGGTCGACTTA
TAATTGCCGGCAAAGGTTTGGCGCTACGATAGCGCACGGCCGCATCGCCT
CTGCGTGGTTGTTGATTGCGCGTCGGAATAGAGACGAGAAACGTCTCCCT
CGGCAAGGCCATCCATCCATTTCCCCGAAAAACCTGCCGCTGAAGCCCCA
TACCCGCATCTAGGGTCCTCAATAAAGAAAAAGGGCGATCAGACAGCCGA
ATCGACAGCTGCCTCGCTCTTTCGCTGTCGTGTTTGCCGCAGCTTTGGTT
GCGCGTTTTGATTTTTCCTACCGAGGATAGCGGATCCCCGTCTTTGGGCC
CCTGCTTTTCTGGCGTGAACGCACGACATTGGAAGTGCTGAGCAGGGTTC
AGAAAAGGTTCGGATAGAGGACGACGATGGCAGCGACAGCAACAGTCATT
TCCGTTCCTCATTATTTTGCCTCGACCCTTCTCCTTGGTCCGTCTCGTTC
GCGTGTCACCACTGTTCCCGTCTGTCGTAGAACCGCTTCCCGGCAATAAA
CAGAGTCGTGGAGGCCATCCAGAAGAAGAAGGCCAAGGACCGCGTTATCA
TCGCAGCCGTCATCGCCGGCTGCATAGTCTTCAGCCTTTGGTTCAAGGGG
TTCTTGTAGCTTGTAGGAGGGCGCCCCGTGCGCCTACGCAGCGCAAGCGC
GTGTCGGTTTTTGTTCCTTCGTGGTACGTATGGTGGGAACGCGCTCATGC
TTTGCACCGCTCCTCGTTTTGTTGCCCGACGCAAAGGCTCGGTCGGGTTA
AGGTGTACCCCGGGAATGGTTTGAGACATCAGCTCCGGTGCTGTTTTGCA
TCTCCAGCGTCGTTCTGGGGCGGGAGTCCGTATGCGGCGATCGCGCGAAG
TGTATTTGTATTCCGAGATCGCAGTGGCTGCTGCCGTACTGCTGTATTGG
ATGTGCGATATGTAATCCAAGTGATGGTGTTTTTCGGTCCTGCGGTAGAG
CAGAAGACCGATAAGATCTGAGCAACCAAGGACACCCCCAGGGGGGCCCG
CCCGCCCCTTTCCCTGCCCTGGATCTGTTCCGGTCGGAAACATATTCCGA
CTAAATTCGCCGCACACCGAGAGGAGACTCTCTATGCTTTTAATGGTGCA
GTATGTAGCATTTGTGCTGCGAGCATCGTTAAAGAGTCATCTCTTCGCCG
CGTTGCCTGTCTGCGAAACTGCCCTGTTCGAGATGGGCCAGGAAATAGAG
AGGGGGGGTGGGAGTGGGAGTGGGCGTAAGGGCTTGCGCGTCGAGGTCCG
CATTACTGATGGATTTTGAAAGGAAGACGCAACAATACCGTAGGAACACG
TGTAATGGATTTGGCCACGTTCGCAAGCTGAAGAGAGGATTACACGACCA
CACAATCGCTGACACGTACGTGGTCGATCGGCGAGTCTGATGGGTGCTTG
CCTGCTGCCTGTTGTGGTCGGTGCGCTTCGGCGACGGCAGCGTCGTCACT
CCCTCCATGACTCGTACAGCCCGATGTTGCTGTTGTTCATGTGATGGTCC
AGCGTGGCGTTCTACGAGATCTGCGGTGCGGTGACTTGTGTACTAGATTT
CTCGGGAAATTTTACGTCGGTGATGGCCACATGAGGTTTAGGATGTCGAG
GAGTGTTGGTTTGTAGACGCGTGCTCTTCTCCACAAACATCCGTACTCCG
GGAGTGTATTGTACCGGCATTTTCGCCTCGGTCTGGTCGTTCTCGTGGTC
GACCCCCCCCACCCTTCTCGTGGAAGTTCATCCCGCCCGTTTCGAGCATG
CATCGCTTGTTCGTAGAGCGTTCGACTAATATTCTCGTGCCGATTCGCCC
CTCCCAAGGAGTAGATGGAGTGCATGTAGTCATTGTGCATCCGCAGGGCA
TGCGCATATGAGGAGCGATGCGTATCGCGCCCGCGGGTGAAACGAGTCCT
CGAACGGCCCCTACTCCAAGGTATGTTGATCGAAGGTAAATGCGTGAAAG
CAGTGCCTGGGTACTGCCACTCTCTCTTGCTGCGCGCAACCAGGGCTTTG
GATGGCGTCCTCTGTGGGCCATGGGTTGCCTCGACGATTGTCCCAGCAGC
ACGGGGTATTTATCGGACCCCTTAATCATGCCTAGCTGTTGTCAAAGTTT
CCAACTATCGCGTTCCACAAAATGCGAAGAATGCTAACGAGGGGCAACGT
CTGTTGTCCGAAGTCCCGAGCGCTTTGAGGTGTGTGCATGTTGGAATAGT
CACTGCTCAAGGGGGCGGAGGGGGTGTGCTCGCCACGGTAGTGGTATGAC
AAGTCTGTTTCTGCACATCGTGCATCTTCGAACAGTGCTCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1536:4389..11080-

>mRNA_H-canaliculatus_F_contig1536.3969.1 ID=mRNA_H-canaliculatus_F_contig1536.3969.1|Name=mRNA_H-canaliculatus_F_contig1536.3969.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1338bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1536:4389..11080- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAAGCTCTTCGACGAGAAGCGCACCGGCTGGAGGCCGACCTGGAGAT
GGAAGCTCTTCGACGAGAAGCGCACCGGCTGGAGGCCGACCTGGAGGTGA
AAACCCAGGCGTACGCGCGGCTCTCCCAGCGGATGAACTCAGATATCCTC
TACGATGCAGGTGAAAACCCAGGCGTACGCGCGGCTCTCCCAGCGGATGA
ACTCAGATATCCTCTACGATGCAGAGGATCCCGTTGACGGTACTCAGGAG
CAGCTGCTGGCGGGGGAGATCGACCAGCTCTTGTCCACTAGGATCCCGTT
GACGGTACTCAGGAGCAGCTGCTGGCGGGGGAGATCGACCAGCTCTTGTC
CACTCTTGGCGAGTGCAACGAGAGAATGGGCGTCCAGGTTGCGAAGGGAG
CCCGAAAAGCAGACTCGGCCATGCTGCAACGCTTGGCGAGTGCAACGAGA
GAATGGGCGTCCAGGTTGCGAAGGGAGCCCGAAAAGCAGACTCGGCCATG
CTGCAACGGTATCGAGAGATCCTGTTCGATTTCTCGACGGAGTTCAAGAA
GACTTCGGCGGCATTGCAGCGCAAGCGAGAGACAACGGAGCTGTTCAAGT
CGTCGAGGTATCGAGAGATCCTGTTCGATTTCTCGACGGAGTTCAAGAAG
ACTTCGGCGGCATTGCAGCGCAAGCGAGAGACAACGGAGCTGTTCAAGTC
GTCGAGGCCCGATCGAGCGGGCGCAGGTCACGGGGACCTGGAGCAGGAGC
ATCTTCTCCGAGAGCAAAACGCGATCCACAGCTCGCTGCAGAGCGCCACC
GGCGTGCTTGGGCCCGATCGAGCGGGCGCAGGTCACGGGGACCTGGAGCA
GGAGCATCTTCTCCGAGAGCAAAACGCGATCCACAGCTCGCTGCAGAGCG
CCACCGGCGTGCTTGGGCAAGCCGCCGAAGCGAGGGAAAGCTTGAGGCAT
CAGCGTGCCATACTGGGAACCGCATCCTCTACATTATCGTTCATGCAGGC
AAGCCGCCGAAGCGAGGGAAAGCTTGAGGCATCAGCGTGCCATACTGGGA
ACCGCATCCTCTACATTATCGTTCATGCAGAACCGCTTCCCGGCAATAAA
CAGAGTCGTGGAGGCCATCCAGAAGAAGAAGGCCAAGGACCGCGTTATCA
TCGCAGCCGTCATCGCCGGCTGCATAGTCTTCAGCCTTTGGTTCAAGGGG
TTCTTGTAGAACCGCTTCCCGGCAATAAACAGAGTCGTGGAGGCCATCCA
GAAGAAGAAGGCCAAGGACCGCGTTATCATCGCAGCCGTCATCGCCGGCT
GCATAGTCTTCAGCCTTTGGTTCAAGGGGTTCTTGTAG
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