mRNA_H-canaliculatus_F_contig1535.3967.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1535.3967.1
Unique NamemRNA_H-canaliculatus_F_contig1535.3967.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1535.3967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1535contigH-canaliculatus_F_contig1535:24157..24681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size525
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1535.3967.1prot_H-canaliculatus_F_contig1535.3967.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1535 24178..24558 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929272.3573968-UTR-H-canaliculatus_F_contig1535:24156..241771622929272.3573968-UTR-H-canaliculatus_F_contig1535:24156..24177Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1535 24157..24177 +
1696845745.077658-UTR-H-canaliculatus_F_contig1535:24156..241771696845745.077658-UTR-H-canaliculatus_F_contig1535:24156..24177Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1535 24157..24177 +
1622929272.385226-UTR-H-canaliculatus_F_contig1535:24558..246811622929272.385226-UTR-H-canaliculatus_F_contig1535:24558..24681Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1535 24559..24681 +
1696845745.0974326-UTR-H-canaliculatus_F_contig1535:24558..246811696845745.0974326-UTR-H-canaliculatus_F_contig1535:24558..24681Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1535 24559..24681 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929272.372775-CDS-H-canaliculatus_F_contig1535:24177..245581622929272.372775-CDS-H-canaliculatus_F_contig1535:24177..24558Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1535 24178..24558 +
1696845745.0883203-CDS-H-canaliculatus_F_contig1535:24177..245581696845745.0883203-CDS-H-canaliculatus_F_contig1535:24177..24558Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1535 24178..24558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1535.3967.1

>prot_H-canaliculatus_F_contig1535.3967.1 ID=prot_H-canaliculatus_F_contig1535.3967.1|Name=mRNA_H-canaliculatus_F_contig1535.3967.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=127bp
MYRQVHVFPLTRLDASQCASQANLHMGIRVSGYHGVEIPGYRCTRATRRV
FFETGSPPASPCQFASAPRCLSLGVKDAGCEKANGNVLLGLAANGKCCCR
CFSAIPQALCCRHFVGEGSCKTRDCA*
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mRNA from alignment at H-canaliculatus_F_contig1535:24157..24681+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1535.3967.1 ID=mRNA_H-canaliculatus_F_contig1535.3967.1|Name=mRNA_H-canaliculatus_F_contig1535.3967.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=525bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1535:24157..24681+ (Hapterophycus canaliculatus Oshoro5f female)
GAGTGTGTTCAAAGGTTCACTATGTACCGACAAGTTCATGTCTTCCCGCT
GACGAGGCTCGATGCTTCGCAGTGCGCGAGCCAAGCCAACCTACACATGG
GTATCAGGGTATCAGGGTATCACGGCGTTGAAATACCAGGATACAGATGT
ACTCGCGCCACGAGACGAGTGTTCTTCGAGACGGGTTCTCCACCGGCAAG
TCCGTGCCAATTTGCCAGCGCGCCTCGGTGCTTGTCGCTGGGTGTCAAGG
ACGCGGGATGTGAGAAGGCAAACGGCAATGTGCTCTTGGGTTTAGCAGCG
AATGGCAAATGCTGTTGTAGGTGTTTCTCGGCGATCCCACAGGCACTTTG
TTGCAGGCACTTTGTTGGGGAAGGGAGTTGTAAGACTCGCGATTGTGCAT
GAGGTGCACGTGGGAGCTATCAAACTGTATCTTCGTTCCCTTGACCAATC
GACTTCTGGAGCGTTGTTGCCCTCCGCCGTCAGCCTTGAACGACACGGTA
GCCTCTTTGTCCCCGACTGGCACAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1535:24157..24681+

>mRNA_H-canaliculatus_F_contig1535.3967.1 ID=mRNA_H-canaliculatus_F_contig1535.3967.1|Name=mRNA_H-canaliculatus_F_contig1535.3967.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=762bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1535:24157..24681+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTACCGACAAGTTCATGTCTTCCCGCTGACGAGGCTCGATGCTTCGCA
GTGCGCGAGCCAAGCCAACCTACACATGGGTATCAGGGTATCAGGGTATC
ACGGCGTTGAAATACCAGGATACAGATGTACTCGCGCCACGAGACGAGTG
TTCTTCGAGACGGGTTCTCCACCGGCAAGTCCGTGCCAATTTGCCAGCGC
GCCTCGGTGCTTGTCGCTGGGTGTCAAGGACGCGGGATGTGAGAAGGCAA
ACGGCAATGTGCTCTTGGGTTTAGCAGCGAATGGCAAATGCTGTTGTAGG
TGTTTCTCGGCGATCCCACAGGCACTTTGTTGCAGGCACTTTGTTGGGGA
AGGGAGTTGTAAGACTCGCGATTGTGCATGAATGTACCGACAAGTTCATG
TCTTCCCGCTGACGAGGCTCGATGCTTCGCAGTGCGCGAGCCAAGCCAAC
CTACACATGGGTATCAGGGTATCAGGGTATCACGGCGTTGAAATACCAGG
ATACAGATGTACTCGCGCCACGAGACGAGTGTTCTTCGAGACGGGTTCTC
CACCGGCAAGTCCGTGCCAATTTGCCAGCGCGCCTCGGTGCTTGTCGCTG
GGTGTCAAGGACGCGGGATGTGAGAAGGCAAACGGCAATGTGCTCTTGGG
TTTAGCAGCGAATGGCAAATGCTGTTGTAGGTGTTTCTCGGCGATCCCAC
AGGCACTTTGTTGCAGGCACTTTGTTGGGGAAGGGAGTTGTAAGACTCGC
GATTGTGCATGA
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