mRNA_H-canaliculatus_F_contig1535.3964.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1535.3964.1 vs. uniprot
Match: D8LID6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LID6_ECTSI) HSP 1 Score: 479 bits (1233), Expect = 1.890e-163 Identity = 283/470 (60.21%), Postives = 336/470 (71.49%), Query Frame = 1
Query: 79 LREAREDLTWDPKQKLRRGGDTAPPRLSTSGFRSLATLLRQRVRADEIDAAAPPRVPSE-ISERPAAGSKNYFSIDWTESRSRRTRSLMSLCVSQIGRDFLSYRADDDAIAEAFLLLPAPCLSRVSRSASARGTVADHNIGLLCSPGVSTLWLRGRFTDEGAAALMPGLSATDKRGRVSH--DLSEVYREGEA-----GSSVAESPARIESSSGNDRGDLATPQAASEAGAGGQREAVKGQEEDWETACDRIEASLRGCVSLTSLEMSSPRVTADFIKRLVIRIPSLRRLGLRGSLGVVGGPDAVCDHVPRLAALRELNVSHCTWFCDITLRRLAKTLSL----GSRHPEEYEPQKE----LVEQQEEGSSGWGAAAAAARSDAVLRDTGARSGTPGAGLS-ISGEHRTGXXXXXXXXXGRATSLATYPRRFRTFTVVCARTAVTDKGARAAEAVSPGLLVVLEEELPNA 1437
+R+AREDL+WD +Q L RGGD APPRLS +GFRSLATLLRQRVRADEIDA APP V SE ++ + A NYFS DWTE+R R+T +L+SLC+ QIGRDFL+YRADDDAIAEAFLLLP+PCLSR+SRSASA G VADHNIGLLCSPGVSTLWLRGRFTDEG AL+P L+A ++ SH +L+EVYR+G A G++V + + D G +A Q A+ A G+ V+G EE+WETACDRIEASLRG VSLTSL++SSPRVTA F+KRL RIPSLRRLGLRGS GVVGGPD VCDHVPRLAALREL++SHCTWFCD+TLRRLAK+LSL + PE P L + E + GWGAA A + ++ A SG G+ +SG R SL RFRTFTVVCARTAVT+KGA+AAE +SPGL+V+L + P A
Sbjct: 1 MRDAREDLSWDRRQNLGRGGDAAPPRLSATGFRSLATLLRQRVRADEIDAVAPPAVRSENLAGKVVAAPSNYFSADWTETRPRKTCTLLSLCIRQIGRDFLAYRADDDAIAEAFLLLPSPCLSRLSRSASAGGNVADHNIGLLCSPGVSTLWLRGRFTDEGVGALLPALNAGNRPNGGSHAAELAEVYRDGTAADCLAGNAVDTAMGTESRVASGDDGLVALIQPAAYHAAAGEA-IVEGAEEEWETACDRIEASLRGGVSLTSLDLSSPRVTAGFVKRLTARIPSLRRLGLRGSFGVVGGPDFVCDHVPRLAALRELDLSHCTWFCDLTLRRLAKSLSLRASPAAGDPENQGPHAGSATYLQDLDEAETRGWGAAFAPSTNNLAFAGH-AGSGPSGSDADLVSGASRESGEK-------ELPSLGRSLHRFRTFTVVCARTAVTEKGAKAAELMSPGLMVILVADKPAA 461 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1535.3964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1535.3964.1 >prot_H-canaliculatus_F_contig1535.3964.1 ID=prot_H-canaliculatus_F_contig1535.3964.1|Name=mRNA_H-canaliculatus_F_contig1535.3964.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=480bp MPGRKKGRQKGAAGSKSQSARKWNDALREAREDLTWDPKQKLRRGGDTAPback to top mRNA from alignment at H-canaliculatus_F_contig1535:12480..16081- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1535.3964.1 ID=mRNA_H-canaliculatus_F_contig1535.3964.1|Name=mRNA_H-canaliculatus_F_contig1535.3964.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3602bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1535:12480..16081- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1535:12480..16081- >mRNA_H-canaliculatus_F_contig1535.3964.1 ID=mRNA_H-canaliculatus_F_contig1535.3964.1|Name=mRNA_H-canaliculatus_F_contig1535.3964.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2880bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1535:12480..16081- (Hapterophycus canaliculatus Oshoro5f female)back to top |