mRNA_H-canaliculatus_F_contig15328.3951.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15328.3951.1
Unique NamemRNA_H-canaliculatus_F_contig15328.3951.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15328.3951.1 vs. uniprot
Match: D7FTT4_ECTSI (Aldo/keto reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT4_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 1.570e-62
Identity = 93/102 (91.18%), Postives = 98/102 (96.08%), Query Frame = 1 
Query:    1 QVQYSLLDQRPGQRMAKLATERGVGLLCYGTVLGGLLSEKWLGKPRPSKEDFTTVSEMKYYNMIRKWGGWPLFQDLLSVTKSVADKHGVSIPNVGVRWVLDR 306
            QVQYSLLDQRPGQRMA LA ERGVGLLCYGTVLGGLLSEKW+GKP P++ DFTTVSEMKYYNMIR+WGGWPLFQ+LLSVTKSVADKHGVSIPNVGVRWVLDR
Sbjct:  179 QVQYSLLDQRPGQRMATLAAERGVGLLCYGTVLGGLLSEKWIGKPTPTRSDFTTVSEMKYYNMIRQWGGWPLFQELLSVTKSVADKHGVSIPNVGVRWVLDR 280
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15328.3951.1 vs. uniprot
Match: A0A836CKF2_9STRA (Aldo/keto reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKF2_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.070e-44
Identity = 71/102 (69.61%), Postives = 80/102 (78.43%), Query Frame = 1 
Query:    1 QVQYSLLDQRPGQRMAKLATERGVGLLCYGTVLGGLLSEKWLGKPRPSKEDFTTVSEMKYYNMIRKWGGWPLFQDLLSVTKSVADKHGVSIPNVGVRWVLDR 306
            QVQYS+LD RP  RM  L TE G+ LLCYGT+LGG LS+KW+GKP P+K  F TVS+ KYYNMIR WGGW LFQ LLS  K VADKHGVS+ NVGVRWVL +
Sbjct:  236 QVQYSMLDTRPAARMQDLCTECGIQLLCYGTLLGGFLSDKWVGKPAPAKAQFETVSQQKYYNMIRAWGGWDLFQQLLSTCKKVADKHGVSVANVGVRWVLQQ 337
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15328.3951.1 vs. uniprot
Match: A0A537S9S6_9PROT (Aldo/keto reductase (Fragment) n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537S9S6_9PROT)

HSP 1 Score: 131 bits (330), Expect = 8.980e-37
Identity = 59/102 (57.84%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:    1 QVQYSLLDQRPGQRMAKLATERGVGLLCYGTVLGGLLSEKWLGKPRPSKEDFTTVSEMKYYNMIRKWGGWPLFQDLLSVTKSVADKHGVSIPNVGVRWVLDR 306
            QVQYSL+D+RP  +MA    + G+ LL YGTVLGGLLSEK+LG+  P + +  T S  KY NMI  WGGW LFQDLL+  K +AD+HG SI N+G R++LDR
Sbjct:   23 QVQYSLVDRRPDTKMAAFCQQHGITLLTYGTVLGGLLSEKYLGRAEPGRGELNTASLQKYKNMIDAWGGWALFQDLLAALKPIADEHGASIANIGTRYILDR 124
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15328.3951.1 vs. uniprot
Match: A0A7Y4TYJ4_9DELT (Aldo/keto reductase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7Y4TYJ4_9DELT)

HSP 1 Score: 133 bits (334), Expect = 1.020e-35
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:    1 QVQYSLLDQRPGQRMAKLATERGVGLLCYGTVLGGLLSEKWLGKPRPSKEDFTTVSEMKYYNMIRKWGGWPLFQDLLSVTKSVADKHGVSIPNVGVRWVLDR 306
            QVQ+SL+DQRP   M     E G+ LL YGTV GGLLSEK+LG+P P      TVS  KY  MI  WGGWPLFQ+LL+V KS+ADKH VSI NVGVR++LDR
Sbjct:  178 QVQFSLVDQRPEVAMIPFCREHGITLLTYGTVCGGLLSEKYLGQPEPGSRALNTVSLEKYKMMIDSWGGWPLFQELLAVLKSIADKHHVSIANVGVRYILDR 279
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15328.3951.1 vs. uniprot
Match: L1IRU4_GUITC (Aldo_ket_red domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IRU4_GUITC)

HSP 1 Score: 132 bits (331), Expect = 2.890e-35
Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = 1 
Query:    1 QVQYSLLDQRPGQRMAKLATERGVGLLCYGTVLGGLLSEKWLGKPRPSKEDFTTVSEMKYYNMIRKWGGWPLFQDLLSVTKSVADKHGVSIPNVGVRWVLDR 306
            QVQYS++DQRP + MA   ++  + LL YGTV GG L++K++G  +   EDF TVS+ KYYNMIR WGGW LFQ+LL+  K VADKHGVS+ NV  RWV+D+
Sbjct:  179 QVQYSIIDQRPQKFMAPFCSKNDIKLLAYGTVCGGFLTDKYVGHKKLKNEDFDTVSKQKYYNMIRAWGGWDLFQELLAKMKIVADKHGVSVANVAQRWVIDQ 280
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15328.3951.1 vs. uniprot
Match: A0A7S1HNK4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HNK4_HEMAN)

HSP 1 Score: 133 bits (334), Expect = 6.220e-35
Identity = 57/102 (55.88%), Postives = 76/102 (74.51%), Query Frame = 1 
Query:    1 QVQYSLLDQRPGQRMAKLATERGVGLLCYGTVLGGLLSEKWLGKPRPSKEDFTTVSEMKYYNMIRKWGGWPLFQDLLSVTKSVADKHGVSIPNVGVRWVLDR 306
            QVQ+SL+DQRP Q+MA    +  + LL YGTV GG LS++++GK + S++DF T S+ KYYNMI  WGGWPLFQDLL+  K + DKHGVS+ NV  RW +++
Sbjct:  281 QVQFSLIDQRPLQKMAPYCVDNDLKLLAYGTVCGGFLSDEYVGKAKLSRQDFDTASKGKYYNMIEMWGGWPLFQDLLATLKQIGDKHGVSVTNVATRWAIEQ 382
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15328.3951.1 vs. uniprot
Match: A0A4D9CZK6_9STRA (Aldo_ket_red domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZK6_9STRA)

HSP 1 Score: 132 bits (333), Expect = 6.280e-35
Identity = 64/102 (62.75%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    1 QVQYSLLDQRPGQRMAKLATERGVGLLCYGTVLGGLLSEKWLGKPRPSKEDFTTVSEMKYYNMIRKWGGWPLFQDLLSVTKSVADKHGVSIPNVGVRWVLDR 306
            QVQYSLLDQRP   MA  A  RG+ LL YGT+LGG  S +W GKP P  + F TVS+ KYYNMIR WG W LFQ+LL     VA+KH VSIPNV VRWVL++
Sbjct:  260 QVQYSLLDQRPNVLMAPAAKARGMSLLAYGTLLGGFFSGQWKGKPDP--KGFETVSQQKYYNMIRTWGDWALFQELLQAMDGVAEKHQVSIPNVAVRWVLEQ 359
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15328.3951.1 vs. uniprot
Match: A0A2W4LI60_9CHLR (Aldo/keto reductase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W4LI60_9CHLR)

HSP 1 Score: 131 bits (329), Expect = 6.430e-35
Identity = 60/102 (58.82%), Postives = 75/102 (73.53%), Query Frame = 1 
Query:    1 QVQYSLLDQRPGQRMAKLATERGVGLLCYGTVLGGLLSEKWLGKPRPSKEDFTTVSEMKYYNMIRKWGGWPLFQDLLSVTKSVADKHGVSIPNVGVRWVLDR 306
            QVQYSL+D+RP  +M +L  + G+GLL YGT+ GGL+SE++LG+P PS  +  T S  KY  MI  WGGW LFQDLL+  K VAD+HGVSI NV VR +LDR
Sbjct:  178 QVQYSLIDRRPEVQMVELCRQHGIGLLTYGTLAGGLISERYLGRPEPSSAELNTASLRKYKQMIDLWGGWDLFQDLLAALKQVADRHGVSIANVAVRAILDR 279
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15328.3951.1 vs. uniprot
Match: A0A537PJ71_9PROT (Aldo/keto reductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537PJ71_9PROT)

HSP 1 Score: 130 bits (327), Expect = 1.090e-34
Identity = 58/102 (56.86%), Postives = 75/102 (73.53%), Query Frame = 1 
Query:    1 QVQYSLLDQRPGQRMAKLATERGVGLLCYGTVLGGLLSEKWLGKPRPSKEDFTTVSEMKYYNMIRKWGGWPLFQDLLSVTKSVADKHGVSIPNVGVRWVLDR 306
            QVQYS++D+RP  RMA    +  + LL YGT+LGGLLSEK+LG+P P   +  T S  KY NMI  WGGW LFQ+LL+V K +AD+H VS+ N+GVR++LDR
Sbjct:  178 QVQYSIVDRRPEARMASFCADHAMTLLAYGTLLGGLLSEKYLGRPEPQPAELDTASLRKYKNMIDAWGGWTLFQELLAVLKQIADRHRVSVANIGVRYILDR 279
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15328.3951.1 vs. uniprot
Match: A0A3M1PPA6_9CYAN (Aldo/keto reductase n=1 Tax=Cyanobacteria bacterium J069 TaxID=2420337 RepID=A0A3M1PPA6_9CYAN)

HSP 1 Score: 130 bits (327), Expect = 1.110e-34
Identity = 61/102 (59.80%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:    1 QVQYSLLDQRPGQRMAKLATERGVGLLCYGTVLGGLLSEKWLGKPRPSKEDFTTVSEMKYYNMIRKWGGWPLFQDLLSVTKSVADKHGVSIPNVGVRWVLDR 306
            QVQYSL+D+RP   MAKL  ERGV LL YGT+ GG LSE++LGKP P + D  TVS+ KY  MI  WGGW LFQDLL+   ++A KH VS+ N+ VR +LDR
Sbjct:  178 QVQYSLVDRRPEAYMAKLCQERGVHLLTYGTLCGGFLSERYLGKPEPRRSDLATVSQQKYKRMIDAWGGWGLFQDLLATLGAIAQKHQVSLANIAVRAILDR 279
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15328.3951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTT4_ECTSI1.570e-6291.18Aldo/keto reductase n=1 Tax=Ectocarpus siliculosus... [more]
A0A836CKF2_9STRA1.070e-4469.61Aldo/keto reductase n=1 Tax=Tribonema minus TaxID=... [more]
A0A537S9S6_9PROT8.980e-3757.84Aldo/keto reductase (Fragment) n=2 Tax=Alphaproteo... [more]
A0A7Y4TYJ4_9DELT1.020e-3562.75Aldo/keto reductase n=1 Tax=Deltaproteobacteria ba... [more]
L1IRU4_GUITC2.890e-3557.84Aldo_ket_red domain-containing protein n=1 Tax=Gui... [more]
A0A7S1HNK4_HEMAN6.220e-3555.88Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A4D9CZK6_9STRA6.280e-3562.75Aldo_ket_red domain-containing protein n=2 Tax=Mon... [more]
A0A2W4LI60_9CHLR6.430e-3558.82Aldo/keto reductase (Fragment) n=1 Tax=Chloroflexi... [more]
A0A537PJ71_9PROT1.090e-3456.86Aldo/keto reductase n=1 Tax=Alphaproteobacteria ba... [more]
A0A3M1PPA6_9CYAN1.110e-3459.80Aldo/keto reductase n=1 Tax=Cyanobacteria bacteriu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15328contigH-canaliculatus_F_contig15328:321..1114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.4
Seed ortholog evalue5.2e-50
Seed eggNOG ortholog2880.D7FTT4
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG0667@1,KOG1575@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929270.60293-CDS-H-canaliculatus_F_contig15328:320..4521622929270.60293-CDS-H-canaliculatus_F_contig15328:320..452Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15328 321..452 -
1696845744.448101-CDS-H-canaliculatus_F_contig15328:320..4521696845744.448101-CDS-H-canaliculatus_F_contig15328:320..452Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15328 321..452 -
1622929270.6144202-CDS-H-canaliculatus_F_contig15328:937..11141622929270.6144202-CDS-H-canaliculatus_F_contig15328:937..1114Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15328 938..1114 -
1696845744.4620636-CDS-H-canaliculatus_F_contig15328:937..11141696845744.4620636-CDS-H-canaliculatus_F_contig15328:937..1114Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15328 938..1114 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15328.3951.1prot_H-canaliculatus_F_contig15328.3951.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15328 321..1114 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15328.3951.1

>prot_H-canaliculatus_F_contig15328.3951.1 ID=prot_H-canaliculatus_F_contig15328.3951.1|Name=mRNA_H-canaliculatus_F_contig15328.3951.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=103bp
QVQYSLLDQRPGQRMAKLATERGVGLLCYGTVLGGLLSEKWLGKPRPSKE
DFTTVSEMKYYNMIRKWGGWPLFQDLLSVTKSVADKHGVSIPNVGVRWVL
DR*
back to top

mRNA from alignment at H-canaliculatus_F_contig15328:321..1114-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15328.3951.1 ID=mRNA_H-canaliculatus_F_contig15328.3951.1|Name=mRNA_H-canaliculatus_F_contig15328.3951.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=794bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15328:321..1114- (Hapterophycus canaliculatus Oshoro5f female)
CAGGTGCAGTACAGCCTGCTGGACCAGCGGCCCGGGCAGCGCATGGCCAA
GCTCGCCACCGAGAGAGGAGTGGGACTGCTATGCTACGGCACCGTCCTCG
GCGGCCTGTTGTCCGAGAAGTGGTTGGGAAAGCCGAGGCCTTCCAAGGAG
GATTTCACAACAGTGTCCGAGATGAAGGTAAATGTCGTTGCCATCCTGTC
GGAATCCTCATCGCTGAAACCGCCAACCTACCGCAATCCTTGCGGTTCTG
CTCAAAAGAAATGTTCTACGTGTGCGGGGTTGGGCTCAGCTCACGTCTGC
CCCACAATTTCGATGCAGTTGTTGTCCAAAATGAAGTGACTAGCGATCCC
CTTACGCCGGAGTACTCGGCATTACCCTCCTCCCAAAGAAAGCTGCCTCC
GCTGCGGCTACTTTCTTGGCGGGAATGTCGCAAAATTCAAATACAAATGA
TGAGCTCGCGCCTGCATCGTATCTCTTATGGCTGTCTGGCTTGTCCCTGT
CATCTTGGCTGCATGCATCTGCAGGAACACGTGGAAGATGTTCAGAGGAA
TGAAAATCCAGCTGCTCTTTCGTCCCTGAAGATCCCCTATGCACCTGCCT
AGCTCAACCCCTTGAACAAACACCCCAACGTTCCACCTCCATCGCATTTT
CTTCGGGTCCAGTACTACAACATGATCCGGAAGTGGGGGGGCTGGCCGTT
GTTCCAGGATTTACTTTCCGTCACGAAATCGGTGGCGGACAAGCACGGTG
TGAGCATCCCCAACGTGGGTGTCCGATGGGTCCTGGACAGGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15328:321..1114-

>mRNA_H-canaliculatus_F_contig15328.3951.1 ID=mRNA_H-canaliculatus_F_contig15328.3951.1|Name=mRNA_H-canaliculatus_F_contig15328.3951.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=618bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15328:321..1114- (Hapterophycus canaliculatus Oshoro5f female)
CAGGTGCAGTACAGCCTGCTGGACCAGCGGCCCGGGCAGCGCATGGCCAA
GCTCGCCACCGAGAGAGGAGTGGGACTGCTATGCTACGGCACCGTCCTCG
GCGGCCTGTTGTCCGAGAAGTGGTTGGGAAAGCCGAGGCCTTCCAAGGAG
GATTTCACAACAGTGTCCGAGATGAAGCAGGTGCAGTACAGCCTGCTGGA
CCAGCGGCCCGGGCAGCGCATGGCCAAGCTCGCCACCGAGAGAGGAGTGG
GACTGCTATGCTACGGCACCGTCCTCGGCGGCCTGTTGTCCGAGAAGTGG
TTGGGAAAGCCGAGGCCTTCCAAGGAGGATTTCACAACAGTGTCCGAGAT
GAAGTACTACAACATGATCCGGAAGTGGGGGGGCTGGCCGTTGTTCCAGG
ATTTACTTTCCGTCACGAAATCGGTGGCGGACAAGCACGGTGTGAGCATC
CCCAACGTGGGTGTCCGATGGGTCCTGGACAGGTGATACTACAACATGAT
CCGGAAGTGGGGGGGCTGGCCGTTGTTCCAGGATTTACTTTCCGTCACGA
AATCGGTGGCGGACAAGCACGGTGTGAGCATCCCCAACGTGGGTGTCCGA
TGGGTCCTGGACAGGTGA
back to top