mRNA_H-canaliculatus_F_contig15323.3950.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15323.3950.1
Unique NamemRNA_H-canaliculatus_F_contig15323.3950.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15323.3950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15323contigH-canaliculatus_F_contig15323:1387..1764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size339
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929270.349016-CDS-H-canaliculatus_F_contig15323:1386..17251622929270.349016-CDS-H-canaliculatus_F_contig15323:1386..1725Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15323 1387..1725 +
1696845744.392064-CDS-H-canaliculatus_F_contig15323:1386..17251696845744.392064-CDS-H-canaliculatus_F_contig15323:1386..1725Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15323 1387..1725 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929270.3610027-UTR-H-canaliculatus_F_contig15323:1725..17641622929270.3610027-UTR-H-canaliculatus_F_contig15323:1725..1764Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15323 1726..1764 +
1696845744.4018102-UTR-H-canaliculatus_F_contig15323:1725..17641696845744.4018102-UTR-H-canaliculatus_F_contig15323:1725..1764Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15323 1726..1764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15323.3950.1prot_H-canaliculatus_F_contig15323.3950.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15323 1387..1725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15323.3950.1

>prot_H-canaliculatus_F_contig15323.3950.1 ID=prot_H-canaliculatus_F_contig15323.3950.1|Name=mRNA_H-canaliculatus_F_contig15323.3950.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=113bp
MHSRLDTAWHESGRQSCLGRGADETFGKTIDYERVVLHDRGPRGNFAVDV
RKEERERDKGRERETDTHKDVTTTITTTTKEVRIERKDVVEGKQARRLFF
ACRPVRHTSERA*
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mRNA from alignment at H-canaliculatus_F_contig15323:1387..1764+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15323.3950.1 ID=mRNA_H-canaliculatus_F_contig15323.3950.1|Name=mRNA_H-canaliculatus_F_contig15323.3950.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=378bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15323:1387..1764+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCACAGCAGACTGGATACGGCATGGCACGAGTCGGGAAGGCAAAGTTG
TCTCGGTCGCGGCGCGGATGAAACGTTCGGCAAAACCATAGACTACGAAC
GGGTAGTACTGCACGATAGGGGGCCGCGCGGTAATTTCGCCGTAGATGTT
CGAAAGGAGGAACGAGAGAGAGACAAAGGGAGGGAGAGAGAGACAGACAC
ACACAAAGATGTAACAACAACCATAACCACAACCACAAAGGAGGTGAGGA
TAGAGCGCAAGGACGTGGTCGAAGGAAAGCAGGCTCGGAGACTGTTCTTT
GCGTGCCGGCCGGTCCGGCATACAAGCGAACGTGCGTAGCGCTGACGACA
GAAACACGGTAAGAAGACGACGAATAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15323:1387..1764+

>mRNA_H-canaliculatus_F_contig15323.3950.1 ID=mRNA_H-canaliculatus_F_contig15323.3950.1|Name=mRNA_H-canaliculatus_F_contig15323.3950.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15323:1387..1764+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCACAGCAGACTGGATACGGCATGGCACGAGTCGGGAAGGCAAAGTTG
TCTCGGTCGCGGCGCGGATGAAACGTTCGGCAAAACCATAGACTACGAAC
GGGTAGTACTGCACGATAGGGGGCCGCGCGGTAATTTCGCCGTAGATGTT
CGAAAGGAGGAACGAGAGAGAGACAAAGGGAGGGAGAGAGAGACAGACAC
ACACAAAGATGTAACAACAACCATAACCACAACCACAAAGGAGGTGAGGA
TAGAGCGCAAGGACGTGGTCGAAGGAAAGCAGGCTCGGAGACTGTTCTTT
GCGTGCCGGCCGGTCCGGCATACAAGCGAACGTGCGTAGATGCACAGCAG
ACTGGATACGGCATGGCACGAGTCGGGAAGGCAAAGTTGTCTCGGTCGCG
GCGCGGATGAAACGTTCGGCAAAACCATAGACTACGAACGGGTAGTACTG
CACGATAGGGGGCCGCGCGGTAATTTCGCCGTAGATGTTCGAAAGGAGGA
ACGAGAGAGAGACAAAGGGAGGGAGAGAGAGACAGACACACACAAAGATG
TAACAACAACCATAACCACAACCACAAAGGAGGTGAGGATAGAGCGCAAG
GACGTGGTCGAAGGAAAGCAGGCTCGGAGACTGTTCTTTGCGTGCCGGCC
GGTCCGGCATACAAGCGAACGTGCGTAG
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