mRNA_H-canaliculatus_F_contig15323.3949.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15323.3949.1
Unique NamemRNA_H-canaliculatus_F_contig15323.3949.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15323.3949.1 vs. uniprot
Match: D8LTA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA1_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 4.610e-24
Identity = 50/60 (83.33%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:    1 SAVHWMKNVVERGPWMENMRGALRRATSGDYGGALVLYSRLAEIGIEVAQSNAAWLLEAG 180
            SAV   KNVVERGPWM+ M+ ALRRAT+GDYGGALVLYSRLAE+G EVAQSNAAWLLEAG
Sbjct:  250 SAVSLFKNVVERGPWMDGMQAALRRATAGDYGGALVLYSRLAEVGFEVAQSNAAWLLEAG 309
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BLAST of mRNA_H-canaliculatus_F_contig15323.3949.1 vs. uniprot
Match: A0A6H5JP59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP59_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 5.770e-24
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:    1 SAVHWMKNVVERGPWMENMRGALRRATSGDYGGALVLYSRLAEIGIEVAQSNAAWLLEAG 180
            SAV   KNVVERGPWM+ M+ ALRRAT+GDYGGALVLYSRLAEIG EVAQSNAAWLLEAG
Sbjct:  427 SAVSLFKNVVERGPWMDGMQAALRRATAGDYGGALVLYSRLAEIGFEVAQSNAAWLLEAG 486
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BLAST of mRNA_H-canaliculatus_F_contig15323.3949.1 vs. uniprot
Match: K8YQU1_NANGC (SEL1 protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YQU1_NANGC)

HSP 1 Score: 69.7 bits (169), Expect = 1.870e-12
Identity = 38/60 (63.33%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 SAVHWMKNVVERGPWMENMRGALRRATSGDYGGALVLYSRLAEIGIEVAQSNAAWLLEAG 180
            +AVH  K+V ERGPW+  M  AL R   GD  GAL+LY  LAEIG EVAQSNAA LLE G
Sbjct:  589 TAVHAFKSVAERGPWVTAMSKALARHKRGDLLGALILYMHLAEIGYEVAQSNAALLLEEG 648
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BLAST of mRNA_H-canaliculatus_F_contig15323.3949.1 vs. uniprot
Match: A0A427ABK4_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A427ABK4_ENSVE)

HSP 1 Score: 65.1 bits (157), Expect = 1.340e-11
Identity = 32/57 (56.14%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    4 AVHWMKNVVERGPWMENMRGALRRATSGDYGGALVLYSRLAEIGIEVAQSNAAWLLE 174
            A H  K V ERGPW      AL     GD G +L+LYSR+AE+G EVAQSNAAW+L+
Sbjct:    5 ATHLYKTVAERGPWSSLSSCALESYLKGDVGRSLLLYSRMAELGYEVAQSNAAWILD 61
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BLAST of mRNA_H-canaliculatus_F_contig15323.3949.1 vs. uniprot
Match: UPI0018910303 (ERAD-associated E3 ubiquitin-protein ligase component HRD3-like n=1 Tax=Triticum dicoccoides TaxID=85692 RepID=UPI0018910303)

HSP 1 Score: 65.1 bits (157), Expect = 3.950e-11
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   19 KNVVERGPWMENMRGALRRATSGDYGGALVLYSRLAEIGIEVAQSNAAWLLE 174
            K+V ERGPW    R AL     GD G AL+LYSR+A++G EVAQSNAAW+L+
Sbjct:   44 KSVAERGPWSSMSRWALESYLKGDIGKALLLYSRMADLGYEVAQSNAAWILD 95
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BLAST of mRNA_H-canaliculatus_F_contig15323.3949.1 vs. uniprot
Match: A0A8K0HYL3_COCNU (ERAD-associated E3 ubiquitin-protein ligase component HRD3 n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0HYL3_COCNU)

HSP 1 Score: 65.9 bits (159), Expect = 4.220e-11
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 SAVHWMKNVVERGPWMENMRGALRRATSGDYGGALVLYSRLAEIGIEVAQSNAAWLLE 174
            SA    K V ERGPW    R AL     GD G AL+LYSR+AE+G EVAQSNAAW+L+
Sbjct:  443 SATLLYKTVAERGPWSALSRWALESYLKGDVGKALLLYSRMAELGYEVAQSNAAWILD 500
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BLAST of mRNA_H-canaliculatus_F_contig15323.3949.1 vs. uniprot
Match: UPI000C871CA4 (ERAD-associated E3 ubiquitin-protein ligase component HRD3 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI000C871CA4)

HSP 1 Score: 65.5 bits (158), Expect = 5.780e-11
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   19 KNVVERGPWMENMRGALRRATSGDYGGALVLYSRLAEIGIEVAQSNAAWLLE 174
            K V ERGPW    R AL     GD G AL+LYSR+AE+G EVAQSNAAW+L+
Sbjct:  420 KTVAERGPWSSLSRWALEAYLKGDVGKALLLYSRMAELGYEVAQSNAAWILD 471
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BLAST of mRNA_H-canaliculatus_F_contig15323.3949.1 vs. uniprot
Match: A0A453IGK5_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453IGK5_AEGTS)

HSP 1 Score: 65.1 bits (157), Expect = 7.770e-11
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   19 KNVVERGPWMENMRGALRRATSGDYGGALVLYSRLAEIGIEVAQSNAAWLLE 174
            K+V ERGPW    R AL     GD G AL+LYSR+A++G EVAQSNAAW+L+
Sbjct:  337 KSVAERGPWSSMSRWALESYLKGDIGKALLLYSRMADLGYEVAQSNAAWILD 388
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15323.3949.1 vs. uniprot
Match: A0A6J0LGX1_RAPSA (ERAD-associated E3 ubiquitin-protein ligase component HRD3A n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0LGX1_RAPSA)

HSP 1 Score: 65.1 bits (157), Expect = 7.890e-11
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    4 AVHWMKNVVERGPWMENMRGALRRATSGDYGGALVLYSRLAEIGIEVAQSNAAWLLE 174
            AV   K+V ERGPW    R AL     GD G A +LYSR++E+G EVAQSNAAW+L+
Sbjct:  411 AVALYKSVAERGPWSSLSRWALEAYMKGDVGKAFILYSRMSELGYEVAQSNAAWILD 467
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BLAST of mRNA_H-canaliculatus_F_contig15323.3949.1 vs. uniprot
Match: A0A3B6IV61_WHEAT (Uncharacterized protein n=13 Tax=Pooideae TaxID=147368 RepID=A0A3B6IV61_WHEAT)

HSP 1 Score: 65.1 bits (157), Expect = 7.900e-11
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   19 KNVVERGPWMENMRGALRRATSGDYGGALVLYSRLAEIGIEVAQSNAAWLLE 174
            K+V ERGPW    R AL     GD G AL+LYSR+A++G EVAQSNAAW+L+
Sbjct:  429 KSVAERGPWSSMSRWALESYLKGDIGKALLLYSRMADLGYEVAQSNAAWILD 480
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15323.3949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTA1_ECTSI4.610e-2483.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP59_9PHAE5.770e-2485.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K8YQU1_NANGC1.870e-1263.33SEL1 protein n=3 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A427ABK4_ENSVE1.340e-1156.14Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]
UPI00189103033.950e-1159.62ERAD-associated E3 ubiquitin-protein ligase compon... [more]
A0A8K0HYL3_COCNU4.220e-1158.62ERAD-associated E3 ubiquitin-protein ligase compon... [more]
UPI000C871CA45.780e-1161.54ERAD-associated E3 ubiquitin-protein ligase compon... [more]
A0A453IGK5_AEGTS7.770e-1159.62Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A6J0LGX1_RAPSA7.890e-1156.14ERAD-associated E3 ubiquitin-protein ligase compon... [more]
A0A3B6IV61_WHEAT7.900e-1159.62Uncharacterized protein n=13 Tax=Pooideae TaxID=14... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15323contigH-canaliculatus_F_contig15323:730..1398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue7.4e-19
Seed eggNOG ortholog2880.D8LTA1
KEGG koko:K14026
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
EggNOG free text desc.ERAD pathway
EggNOG OGsCOG0790@1,KOG1550@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size180
Cds size165
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15323.3949.1prot_H-canaliculatus_F_contig15323.3949.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15323 730..1383 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929270.543771-CDS-H-canaliculatus_F_contig15323:729..7801622929270.543771-CDS-H-canaliculatus_F_contig15323:729..780Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15323 730..780 -
1696845744.4116864-CDS-H-canaliculatus_F_contig15323:729..7801696845744.4116864-CDS-H-canaliculatus_F_contig15323:729..780Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15323 730..780 -
1622929270.560611-CDS-H-canaliculatus_F_contig15323:1269..13831622929270.560611-CDS-H-canaliculatus_F_contig15323:1269..1383Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15323 1270..1383 -
1696845744.4240777-CDS-H-canaliculatus_F_contig15323:1269..13831696845744.4240777-CDS-H-canaliculatus_F_contig15323:1269..1383Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15323 1270..1383 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929270.5717204-UTR-H-canaliculatus_F_contig15323:1383..13981622929270.5717204-UTR-H-canaliculatus_F_contig15323:1383..1398Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15323 1384..1398 -
1696845744.4350605-UTR-H-canaliculatus_F_contig15323:1383..13981696845744.4350605-UTR-H-canaliculatus_F_contig15323:1383..1398Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15323 1384..1398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15323.3949.1

>prot_H-canaliculatus_F_contig15323.3949.1 ID=prot_H-canaliculatus_F_contig15323.3949.1|Name=mRNA_H-canaliculatus_F_contig15323.3949.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=55bp
MKNVVERGPWMENMRGALRRATSGDYGGALVLYSRLAEIGIEVAQSNAAW
LLEAG
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mRNA from alignment at H-canaliculatus_F_contig15323:730..1398-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15323.3949.1 ID=mRNA_H-canaliculatus_F_contig15323.3949.1|Name=mRNA_H-canaliculatus_F_contig15323.3949.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=669bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15323:730..1398- (Hapterophycus canaliculatus Oshoro5f female)
TCTGCTGTGCATTGGATGAAGAACGTCGTAGAGAGAGGTCCGTGGATGGA
GAACATGCGGGGGGCTTTGCGCCGCGCGACGTCAGGAGACTACGGTGGGG
CGCTGGTTCTCTACTCAAGACTGGCCGAGGTGAGGGCCTCCCACCGGACT
AGGACGAGGAGAGGAGGGGGGTGGGCGGGGACTGTTTTGGTGTGTTGATA
CCCACTGTCCCGCTCAAGCAGTCCAGCTGCTGCCGACACCTTGATATGCA
TGGCATGCTCCTTGTTCCCAAGGTGATCTCGGCAGGTGTGCTCCCAGAGC
GCAGGTGTGCTCCCAGAGCGAGCGATTGACCACACGCGCACGCTTTCTTC
TTCTCCTGTGCTGTGCTGTCCGTTTCTTGTATGGGGGTTCGGCGTTTTCG
CCTTGTTCTTGCGCCGCAGAGCATCAAGTTTATCTCATCAGGATTGTACC
CCGGCGGTGTTTGTCAATCTGACTCGCTTTCTCCGTCGTCGGTGATGGTC
TCGGTGTTGCTCTCAACCATTGGTCGCTGCGGCCATAAATGAACCAATCA
ATGAATCAATTCCTTCCATCCATCCATCCATCCATCCATCGATGAACCAA
TCAACCAAATCGTTCCAGATCGGAATCGAGGTGGCTCAGAGCAACGCAGC
TTGGCTGCTGGAGGCTGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15323:730..1398-

>mRNA_H-canaliculatus_F_contig15323.3949.1 ID=mRNA_H-canaliculatus_F_contig15323.3949.1|Name=mRNA_H-canaliculatus_F_contig15323.3949.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=330bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15323:730..1398- (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGAACGTCGTAGAGAGAGGTCCGTGGATGGAGAACATGCGGGGGGC
TTTGCGCCGCGCGACGTCAGGAGACTACGGTGGGGCGCTGGTTCTCTACT
CAAGACTGGCCGAGATGAAGAACGTCGTAGAGAGAGGTCCGTGGATGGAG
AACATGCGGGGGGCTTTGCGCCGCGCGACGTCAGGAGACTACGGTGGGGC
GCTGGTTCTCTACTCAAGACTGGCCGAGATCGGAATCGAGGTGGCTCAGA
GCAACGCAGCTTGGCTGCTGGAGGCTGGAATCGGAATCGAGGTGGCTCAG
AGCAACGCAGCTTGGCTGCTGGAGGCTGGA
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