mRNA_H-canaliculatus_F_contig15317.3942.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15317.3942.1
Unique NamemRNA_H-canaliculatus_F_contig15317.3942.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15317.3942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15317contigH-canaliculatus_F_contig15317:22..955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size935
Cds size933
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929269.6312702-CDS-H-canaliculatus_F_contig15317:21..9541622929269.6312702-CDS-H-canaliculatus_F_contig15317:21..954Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15317 22..954 +
1696845744.0333142-CDS-H-canaliculatus_F_contig15317:21..9541696845744.0333142-CDS-H-canaliculatus_F_contig15317:21..954Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15317 22..954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15317.3942.1prot_H-canaliculatus_F_contig15317.3942.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15317 22..954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15317.3942.1

>prot_H-canaliculatus_F_contig15317.3942.1 ID=prot_H-canaliculatus_F_contig15317.3942.1|Name=mRNA_H-canaliculatus_F_contig15317.3942.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=311bp
TPSGDRGTSGRLAARRTAASPSPARDSGSAAEGAGASGLSSGGTPLRCRK
PGGASPSGRKGVSPSQARGALGAGKAAAVAAKSSGSSSCIPRRGSTHGAP
KEVASSASPARASSPYVATVKSAGGGSGSASAASTTSRRKGALSRIGTSS
KTSPAARQAAADSRRASPARAATAVAAVAAAAAAAAAAPAAGGPAVGSCR
ERRSEGWRAAGGRRRGNGKAGLMPKGDGDADADADADADGEKCGKGSIFA
MACFPCGNSSGRSDQATGDRSRRSSSDSVAAIATCAASSPFSASTPSPAT
SRPKTPGGRRR
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mRNA from alignment at H-canaliculatus_F_contig15317:22..955+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15317.3942.1 ID=mRNA_H-canaliculatus_F_contig15317.3942.1|Name=mRNA_H-canaliculatus_F_contig15317.3942.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=934bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15317:22..955+ (Hapterophycus canaliculatus Oshoro5f female)
ACGCCGTCAGGCGACCGCGGCACGAGCGGCAGGCTGGCGGCGAGGAGAAC
GGCGGCGTCCCCGTCCCCCGCGAGGGACTCGGGCTCGGCGGCCGAGGGAG
CGGGGGCCAGCGGCCTCAGCTCGGGCGGCACGCCACTGCGCTGTAGGAAA
CCCGGCGGGGCTTCCCCTTCAGGAAGGAAGGGGGTTTCGCCGTCGCAGGC
TCGAGGCGCCTTGGGCGCCGGTAAAGCGGCAGCGGTAGCAGCGAAGTCTT
CGGGGTCTTCGTCTTGCATCCCCCGTCGAGGAAGCACGCACGGGGCCCCT
AAGGAGGTGGCGTCATCCGCGTCGCCCGCTAGGGCGTCGTCCCCGTACGT
CGCGACGGTGAAGTCAGCTGGCGGCGGCAGCGGGTCCGCCTCTGCTGCTT
CGACCACCAGCCGCCGAAAAGGTGCTCTCTCTCGCATCGGAACGTCCTCG
AAGACGTCGCCGGCCGCGCGGCAGGCGGCGGCGGACAGCAGACGCGCTTC
CCCTGCCCGCGCAGCAACAGCCGTTGCTGCCGTTGCTGCTGCTGCGGCGG
CGGCGGCGGCGGCCCCGGCTGCAGGGGGTCCGGCGGTTGGGTCTTGCCGT
GAAAGGAGGAGCGAAGGCTGGCGGGCTGCCGGTGGGCGACGGCGCGGGAA
CGGCAAGGCCGGCTTGATGCCGAAAGGTGACGGCGATGCCGATGCCGATG
CCGATGCCGATGCCGATGGGGAGAAGTGCGGCAAGGGCTCGATCTTCGCC
ATGGCTTGCTTCCCCTGCGGCAACAGCAGCGGCAGAAGCGACCAGGCCAC
GGGTGACCGCAGCCGCCGTAGCAGCAGCGACTCCGTCGCCGCCATCGCCA
CCTGCGCCGCCTCTTCGCCGTTCAGCGCCAGCACTCCGAGCCCGGCGACG
AGCAGGCCGAAGACCCCTGGCGGCCGGCGGCGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15317:22..955+

>mRNA_H-canaliculatus_F_contig15317.3942.1 ID=mRNA_H-canaliculatus_F_contig15317.3942.1|Name=mRNA_H-canaliculatus_F_contig15317.3942.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1866bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15317:22..955+ (Hapterophycus canaliculatus Oshoro5f female)
ACGCCGTCAGGCGACCGCGGCACGAGCGGCAGGCTGGCGGCGAGGAGAAC
GGCGGCGTCCCCGTCCCCCGCGAGGGACTCGGGCTCGGCGGCCGAGGGAG
CGGGGGCCAGCGGCCTCAGCTCGGGCGGCACGCCACTGCGCTGTAGGAAA
CCCGGCGGGGCTTCCCCTTCAGGAAGGAAGGGGGTTTCGCCGTCGCAGGC
TCGAGGCGCCTTGGGCGCCGGTAAAGCGGCAGCGGTAGCAGCGAAGTCTT
CGGGGTCTTCGTCTTGCATCCCCCGTCGAGGAAGCACGCACGGGGCCCCT
AAGGAGGTGGCGTCATCCGCGTCGCCCGCTAGGGCGTCGTCCCCGTACGT
CGCGACGGTGAAGTCAGCTGGCGGCGGCAGCGGGTCCGCCTCTGCTGCTT
CGACCACCAGCCGCCGAAAAGGTGCTCTCTCTCGCATCGGAACGTCCTCG
AAGACGTCGCCGGCCGCGCGGCAGGCGGCGGCGGACAGCAGACGCGCTTC
CCCTGCCCGCGCAGCAACAGCCGTTGCTGCCGTTGCTGCTGCTGCGGCGG
CGGCGGCGGCGGCCCCGGCTGCAGGGGGTCCGGCGGTTGGGTCTTGCCGT
GAAAGGAGGAGCGAAGGCTGGCGGGCTGCCGGTGGGCGACGGCGCGGGAA
CGGCAAGGCCGGCTTGATGCCGAAAGGTGACGGCGATGCCGATGCCGATG
CCGATGCCGATGCCGATGGGGAGAAGTGCGGCAAGGGCTCGATCTTCGCC
ATGGCTTGCTTCCCCTGCGGCAACAGCAGCGGCAGAAGCGACCAGGCCAC
GGGTGACCGCAGCCGCCGTAGCAGCAGCGACTCCGTCGCCGCCATCGCCA
CCTGCGCCGCCTCTTCGCCGTTCAGCGCCAGCACTCCGAGCCCGGCGACG
AGCAGGCCGAAGACCCCTGGCGGCCGGCGGCGGACGCCGTCAGGCGACCG
CGGCACGAGCGGCAGGCTGGCGGCGAGGAGAACGGCGGCGTCCCCGTCCC
CCGCGAGGGACTCGGGCTCGGCGGCCGAGGGAGCGGGGGCCAGCGGCCTC
AGCTCGGGCGGCACGCCACTGCGCTGTAGGAAACCCGGCGGGGCTTCCCC
TTCAGGAAGGAAGGGGGTTTCGCCGTCGCAGGCTCGAGGCGCCTTGGGCG
CCGGTAAAGCGGCAGCGGTAGCAGCGAAGTCTTCGGGGTCTTCGTCTTGC
ATCCCCCGTCGAGGAAGCACGCACGGGGCCCCTAAGGAGGTGGCGTCATC
CGCGTCGCCCGCTAGGGCGTCGTCCCCGTACGTCGCGACGGTGAAGTCAG
CTGGCGGCGGCAGCGGGTCCGCCTCTGCTGCTTCGACCACCAGCCGCCGA
AAAGGTGCTCTCTCTCGCATCGGAACGTCCTCGAAGACGTCGCCGGCCGC
GCGGCAGGCGGCGGCGGACAGCAGACGCGCTTCCCCTGCCCGCGCAGCAA
CAGCCGTTGCTGCCGTTGCTGCTGCTGCGGCGGCGGCGGCGGCGGCCCCG
GCTGCAGGGGGTCCGGCGGTTGGGTCTTGCCGTGAAAGGAGGAGCGAAGG
CTGGCGGGCTGCCGGTGGGCGACGGCGCGGGAACGGCAAGGCCGGCTTGA
TGCCGAAAGGTGACGGCGATGCCGATGCCGATGCCGATGCCGATGCCGAT
GGGGAGAAGTGCGGCAAGGGCTCGATCTTCGCCATGGCTTGCTTCCCCTG
CGGCAACAGCAGCGGCAGAAGCGACCAGGCCACGGGTGACCGCAGCCGCC
GTAGCAGCAGCGACTCCGTCGCCGCCATCGCCACCTGCGCCGCCTCTTCG
CCGTTCAGCGCCAGCACTCCGAGCCCGGCGACGAGCAGGCCGAAGACCCC
TGGCGGCCGGCGGCGG
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