mRNA_H-canaliculatus_F_contig1531.3940.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1531.3940.1
Unique NamemRNA_H-canaliculatus_F_contig1531.3940.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1531.3940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1531contigH-canaliculatus_F_contig1531:10118..16739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size401
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1531.3940.1prot_H-canaliculatus_F_contig1531.3940.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1531 10642..16703 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929269.1388054-UTR-H-canaliculatus_F_contig1531:10117..102041622929269.1388054-UTR-H-canaliculatus_F_contig1531:10117..10204Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1531 10118..10204 -
1696845743.777167-UTR-H-canaliculatus_F_contig1531:10117..102041696845743.777167-UTR-H-canaliculatus_F_contig1531:10117..10204Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1531 10118..10204 -
1622929269.1516006-UTR-H-canaliculatus_F_contig1531:10564..106411622929269.1516006-UTR-H-canaliculatus_F_contig1531:10564..10641Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1531 10565..10641 -
1696845743.790841-UTR-H-canaliculatus_F_contig1531:10564..106411696845743.790841-UTR-H-canaliculatus_F_contig1531:10564..10641Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1531 10565..10641 -
1622929269.213779-UTR-H-canaliculatus_F_contig1531:16703..167391622929269.213779-UTR-H-canaliculatus_F_contig1531:16703..16739Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1531 16704..16739 -
1696845743.82077-UTR-H-canaliculatus_F_contig1531:16703..167391696845743.82077-UTR-H-canaliculatus_F_contig1531:16703..16739Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1531 16704..16739 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929269.1630363-CDS-H-canaliculatus_F_contig1531:10641..106651622929269.1630363-CDS-H-canaliculatus_F_contig1531:10641..10665Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1531 10642..10665 -
1696845743.8016381-CDS-H-canaliculatus_F_contig1531:10641..106651696845743.8016381-CDS-H-canaliculatus_F_contig1531:10641..10665Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1531 10642..10665 -
1622929269.174231-CDS-H-canaliculatus_F_contig1531:16526..167031622929269.174231-CDS-H-canaliculatus_F_contig1531:16526..16703Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1531 16527..16703 -
1696845743.8111618-CDS-H-canaliculatus_F_contig1531:16526..167031696845743.8111618-CDS-H-canaliculatus_F_contig1531:16526..16703Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1531 16527..16703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1531.3940.1

>prot_H-canaliculatus_F_contig1531.3940.1 ID=prot_H-canaliculatus_F_contig1531.3940.1|Name=mRNA_H-canaliculatus_F_contig1531.3940.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=67bp
MKTHYTPLAVKAKCPESGHTPTRPPATCLPYHPDIRREPGATRARLLPSS
RVRGLSLSRVYTPTRS*
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mRNA from alignment at H-canaliculatus_F_contig1531:10118..16739-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1531.3940.1 ID=mRNA_H-canaliculatus_F_contig1531.3940.1|Name=mRNA_H-canaliculatus_F_contig1531.3940.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6622bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1531:10118..16739- (Hapterophycus canaliculatus Oshoro5f female)
ATTAGATACAAGCACAAGTATCATGGATGCGGCGGGATGAAAACGCACTA
CACACCCCTTGCTGTGAAGGCGAAATGCCCAGAGTCTGGACACACACCAA
CGCGGCCACCTGCCACCTGCCTGCCTTACCACCCCGACATTCGGCGAGAA
CCTGGTGCCACTCGTGCTCGCCTCCTTCCCTCGTCTAGAGTCCGTGGCCT
CTCTTTGTCAAGGGTGAGATGGGGTCGATGAGTCGGGTTGTTGGGGTGTT
CCTCGAGGTGCTCTATCAATCGAACCTGACCTTTTTCACCAGACAGCAGT
TGAAGCTGAACGACTCCTTTCGTGGGAGTCAGTCAAGCAGCGCCTGGTTC
ACGAATAGGAGAATAGGCGCCGACAAGCAGCAGCAATGCCATGTCGGGCA
CGTAAGAAAGGGTCTCACTGAATAGCGTCTTGACACCCTGCGAGATGGGG
AAGCCAAGACCGCACAGGTGGCCAAAAGGGTACAGCAGCACCTCGTGAGG
CAGAGCATTGGCATAGAAGAGCCTACTGAAGGCCCCAAGGTACCCCTGGC
TGTCAGGGTTCGTGCACGGCGTCCCGAAGTTGCGCAGGGTTAGCGCACAG
CGGCACAGTGTCATACGGCTGCGCGAGGCACGCTCACAGCGTTGTGGAAA
ATGAGCCAAGCTACTCATACCGAATGGGAGCAACAGCAGCATCGCGGCTT
CACCTGTTTTTTGAATCTGTCTTCCCTTTTTTTCTTTTTGTCAGTCGCAG
CAGACTCCTGCTTCATAAATCTAACCAACAGCCTTACACGTCTGAAGGGG
TGAGCATAGAAAAATGCAGGTCAGCAGCGGTAGGCCCGGTTGGGTCTGAT
GAGACCCTACCCTGTGTGCGTCTCCCTATCGCAGCAGTCGATTGCCCTAC
AGTTGGTTGTCAACATGGTTGTTGTTCCTGTTCAGCTGTTCAGTCCAGTA
ATAAACGTTGTTTGCTGGGCTGAAGAACTGCTTTCCATGACCAACGATCA
AATACGGTAGATCTACACAAGTATGCATGTATGAATACTCGGAGGTACGA
AATACAGCACAGCAGCAGCAGCTCTACAAATAAGGCTGCTGCTTCGCTGA
AAGATTGCTGCAAAATGCTGTGAGTTGTTGTCTACAACCTCTATACCCCC
ATGTTGCCGTGATTACGGTTAGTCCCCCTCTTCAACCATCTTGATATCGT
GGTAATTCTTGGCGTGAGTAAGTTTCGCGTGCAGCGCATCAATCAGCCGC
AATATGTTTGTTGCACTTGTAGTGGAGGAGAGCAACTACTGTACAAGTAT
CCTTTTTCCATGTTCATGGTGGGTCACGATAGCCAGTTCAATTAAAAAAA
AATACCCGATGGGTAGATATAGATTAGTCAGGTTGGGGATTGGACCACCG
CCCCCCCCCCCGTATATTGTACTAGAGTAGGATGGGTGATAAGCCGAGCG
GACTCAGCAACTAACAGTACAAGTAATCCATCTGCTTTACTGCTGTGCCG
TTGTGCCGGTGTAGGAGACTATGTGTTCATAATGCAGCGCTTTTTTGGAT
CACCCGTACGTACCATATTTTGGTGGTGGGAAAACATAAACATTCCATCG
CGTGAGAAGACGGGTGGGGTCCCCCAGAGCCCCCCCCGATCAGTTCCGAA
AAAAGGTACTGCTGCGGTCGCTGCAGCTGTGTTGTTGGTGCGCTCCGAGC
ACTTGCCAGCATCACGAGTTGGCAGCGCGACAGACAGAAGCAAGAAAGGC
CCACAAACAGCTGACGCAGCCACAGAGAGCGTTTTTTTCTGTTGGAAGGT
GCCCTCGGCAGCAGCGGGGCGTGCAGAGAGCGTTTTTTTCTGTTGGAATG
TGCCCTGGACAGCAGCAGAGCGTGGTGCGGGCGGCTTGGTCGGGACGGTA
AAAAGTGCGGGGGGTCGGGATGGTCCAACGTTGCCTACACCACACGTCAC
GTTCTCGTCGCTGACACGCTTGTGACCCACATGATTTTTGCCGTCGGTGA
CGCCCAGTAGCTCCTCATCTCCTCCAGAAGCTTTACGCGCCTACCCTAAT
TTCAAATAATTTTATATACCTCTGGGCCTGCCTGCTTGCTGGGTCGGCCG
TTCTATGGATGCTGACTTGTTGTGCTGCTGTAAGCTACCAAACGAACCGC
ACGCACAGCAGCAGTCATTTGGTGTGGTTTGGTGGAAACCCCGAGGAGAC
AGCGCTTTGTCCCCGAAATTCCCCGACAAAACGTCGTACAGCGCGGCCAT
CTCTTATCGGAGGGCTGCGAGACCAGTATTGCGCAACGTGCCGCATTTTT
CTTCCATCTCAGAAGCCGTCAGTTCGTCATTTGATCCTCCGTAGATGTTG
CTCTTCCCAAAAAAGTGCTGTTTTTTGTTTTTTGACGGCCAGGACAAAAA
GTTTGAGACACCCTACACGCGAGAAGGAAACAATGGGTGGTACAATTGTA
CAGTATATACGATAGAGCCCTTTTTTTCTCTCAGGAATGCAAGGAGGGGA
AAGGCTAGCGGCTTCGCCTCTCGCTCGGCTCATTGAATTGCTGCTTCATG
GATTGTATTGGGCCATGACCCGTATTAATTTAAGTCTCAAATCGAGCCAT
CGCTAGTAACCTGATAGAGGACAGGTCGCGGGTCAAACCTCGCAGACAGG
TACCTGGTAGCAGATACCAAAAAGATGCGCGAGGAATGATGAAATCAACC
AGAACGGACATCTACGTGTTGCAGTAACACTTCGCAGTGACCCGCGGGAC
TGAGCCGCAGGCATCATAGGTCCGTCCGACCTGCAGCAGAGCAACATTAC
GTTTTCATGATGGAACGGGTCCGGTCGAGTCATGACCCATCCTTGGAGCC
AGTCACGAGTCATCGACTCTCCGAACTAACATGACGTAGGGCTTGGTCGG
ACCAAGTCGCCCAAAAGATAAAAGCCGATTGGTAGTTCCTCAACTCTTCG
GGTCTGCCCTCGCATGTGTCCGCCGCTCCGACCTCTATCATAGCGTTCAT
TCTTGCTGCCTTTCCTTGGTACTTCGCTTCAGATATCATTGCGTACATTC
TTGCTTCCTTTCCTTAGTATTTCGCCTCAGACGTGTGGCTGGTGGCTACA
AATTCAACGAGCATGATCGACACAACAGTACTACTCCTTCTTCTTTCCGG
CACGGTCTACGCTTTCCTGCCTGAAGCTTAGTCTGCGCTCTTTGAAAAAC
AAGTGCTGTTCATCCTTCAGCCCCCAAGCGGACTCCTTGGGATCGTAAGC
GTTGCCTATGTTTGATCCTTGCCTTACCAGTGAGTCACGCTGCGAATGAG
GCGGAGCGAAGGGGCGCCAAGCGCACCGACCGCGGAGCCCCTTGTGCGTA
ATGCATACCTGGCACTCCATATATATTGATGTTTCAACGTCGTTTCAATT
CACTTTACATGAAGGTCGATTGCTTCACTACATAAGTTGGTATAGAAGGT
AGCGTAGGGGTTGAGACTAGTTCATCGTAAGAGCGGCGGGAAAGGACGGC
CGCCACCTGCGCACGACCTCTGGCACCAACTCAAGCGACTCCAAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGCAGCAGCTAGCACG
GGCGCCGTTGCGCGGTAGCATCGACAGCTGACACTCGAGCCCTGAGGCGA
CGATCGAAAAATGAATCACACGCACATGTTGAAAAACGAAAATCTTAGAA
GTACGAAGAAAAAACCGCACCAATAGTATACGCCGTGCAAAAAAAAGAAG
TAAAACGGTATAAAGAAAAACACCGAGAATGAAAAAATAAGATCGAAAAT
AATAACAATTTTTTTTTTGATGATTGTACACACAGCCAAGGTTTTTCGGG
AGGTGCGTGCAGCCCTCCCGTGGATGTCGCAAGAGCACATATCGGGGACA
AAGGGGAACGCACGGGAGCATCAAGAGGAGTGGGTATATGTCTCTTCTCG
TCCGCTCGCCGATGTGTCGCTCAAAAATGCCAACAGTATTATTCAGGCTT
CGAATACATATGAAGCAGAAAAATAACAATCCCATTACGCTTTCTCCGCC
CGTTTGGGGTAAGGAAGGGCGTAGATCTCGAACAATCGGCATAGATAGGT
TGACGGGGGTGTACGGTCACCGACTTCGAGTGAGCACATGAGAGGGTGCA
CCCCTCCGAAGGTTACCCCCCACGTTGTCGTTTGTTCCAGCTACCCGTGT
GAAAGGGGAGGGGGGATTCCAGGGTTATCTCGTGAAAATAAAGAAATGCA
TGAGGGGGTTGGTCTTACTTTCAGTGCCCGGTAAGTTTCCGTATTCACGT
CAGTGGCTACTTAAACGAAGGAATATACAGTGTATTTATGTGGGGCGAAC
GAGGTGCATCGTTCAGTGGCCTGTCTTCGGATGGCGGGGGCGGGCACAAT
CTGACCCTTGAAGCGGATAACGAGGTTGGTTTTTGAACCATCGAGGAGGG
GGGTGGTCTTTGGGCGTGCCGCTTCCGATGGCATTACGGTCGGTCGCTGC
CTTGTTGAAACAAACAATACACAATTTATAGTCATCATGCATGTATGTGT
ACGTGTTCTGCAACTCGAGCGCAAGGTTCGTGCGAGTCGGTGTCCTGCGC
ACCCACTCCCAAGTCGACTCTTGCACACACCTGTCTGAGGAGCACGGTGC
CGACGCGTATTTGTATTTTGTTCCTCGTTTGTTCCTTGAGCAGACTGCGC
CCCCGTCACACGTTGGGACGGCGCTCGCAGAGTCCCAATCTGGTTCCTGC
ACACGGCACCGTTCGCTCTGTACGCTGGCAGCCGGAAGTTTCGACGTTAC
ACAGGTTGTTTTGGGGAAGCAAGGTTCCGGCCGCATGCGACCAATGTTGC
GGTAGTGATACACCGTCGACAAAGAACAACACGTTGTAAGCAGCTTACAT
AGAACCGCAAGGTACCCTTTTTGGCCACCCGTGCGGTCGTGCTTGTCAGG
CGGACTGCCCTCTCCTATGCGCACTACATTACAAAGACACAGTAGCACCG
CCGTTGCAAATTCGCCGAAGTTAGTACGAGAGCATTCAATACGCCCCCCT
TGCGTGTTCACCAACATAAACAATCGTCTACGCCGTGCACATGGACACAC
GCGCCGTGCAGACCGGTTTATCGGTTTGTAGACCAGCAGCCCGGCATCTC
CGAGGCAGCCATGTGGTCGATCGCCACCCTTCGGAGCATCAATGTTATCG
AAGGTGGACTGTGCACGTTGCTTGTGCGACGAAAAAGGCTCTTGGGTAGA
AACATCGTTGCAGACGACATCGAAGCATCCTCTTCCGACTTCTCGACCTC
TGTGTGTCCGTCTGTGGGAACTTCTTGTATCGTCTCGGCATTTGATGCCT
TGTCTGGACGTCTGCAAGTGCCGATACGGGGGTACGGGAATACGGAAGAA
GTTCTACATGTTTTTGTGCGTCGCACAGCAGTTCAGCAGTTATAGGCATC
CATTCTTCGTTGGAGACGCGTCTTTCTGTATTTTCCTCAATCGCAGCAGC
AGCCACCATAAGCTCAGCCGCTTTTAGCGGGGCAGCTCAGCCGCTTTTAG
CGGGGGGCTTAGATTGTCGACGGAGCAGCGGAGGGCGAGCGCCGAGTGCA
CCCAATACCTACGGTGGCAGCCGACCGCAAGACTCTCTGCAAACCGCCCA
ATACCTGCAATATATATACAAGTAGGTGCTCAAGTTCCGATTTTAGTTAC
GCTTTGTTATGGGACCCGAATGGACTCGGTATAGAGTGTCGTGTTTCCAG
AGAAAGTATATCCCACGAAAAACACGAAACAGTTCGTCTTGCATGAAGTA
AAGCAGTACAAATTAATGGTGAAGTCTTGACACTGCTGTCGTTGAACCAA
ATTCACTTGAATACCTGCGCTGCCGTGCTCAAGTCTGTTCGTCATGCGTG
TGATGCACAACGAGTAAGCGGTTTTGAGGACGAGGCAATTATCACGGGGC
GTTTTTTTGCAAGTTGTACCTTCAACCTTCACGTCTTCGGGTGCGCAATG
ATTCTCAAACAATGGGCCTAACTGGCCAACGCTTTTACGCTTTTACGCAA
CCTCGCAACTTAACTTCCTCCAAGGTTTACACCCCGACCAGGAGCTGACG
CCGAAGTGGCCGCTGCATGAGGGGACTGAACGGAATCCTGACGTTCGGGC
CTTTGAGGCTCCCAGACGCTAGCGGGTACGGTGCAAAACCAACCTGCCTT
GTCTTTCTCGGCGCTGCTACGTTACATGTTGCTCATTCGCACTTGGGGCT
GGGGCAAAGTGTGTGTTTTGTAGACTGTTCTTCACTAGTCATCCTTTTTG
CGGGTGTTGCCCGATAAAAATGGCCGCGTAGGAGCGAGGTCGCGCTTGAT
GCCCACGAGGACGATTTTCTTTTCTGTTTTGCGTTTGTCGACGGTGGGCA
GGGCAGGGAACCCAGGCTTGGCGCTGCGTGTCGTAGGTCGAGTGCGCGCC
GCCTGTTTTCCAATCTCTCTGCCTTCTCGTGGTGTCTTCGCCTTCCGCTG
CCCCGCCCCGCTCTCTCGACTCTCCCGACTCGCAGCGCCCGTTCCTTCTT
GCGGTCCCGCGGCGCAGCCTGCAACAGGCCCGACGGATGGCTGCTGTTAA
TCGTGGCTGCCTTTGTGTTTGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1531:10118..16739-

>mRNA_H-canaliculatus_F_contig1531.3940.1 ID=mRNA_H-canaliculatus_F_contig1531.3940.1|Name=mRNA_H-canaliculatus_F_contig1531.3940.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=402bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1531:10118..16739- (Hapterophycus canaliculatus Oshoro5f female)
ATGAAAACGCACTACACACCCCTTGCTGTGAAGGCGAAATGCCCAGAGTC
TGGACACACACCAACGCGGCCACCTGCCACCTGCCTGCCTTACCACCCCG
ACATTCGGCGAGAACCTGGTGCCACTCGTGCTCGCCTCCTTCCCTCGTCT
AGAGTCCGTGGCCTCTCTTTGTCAAGGATGAAAACGCACTACACACCCCT
TGCTGTGAAGGCGAAATGCCCAGAGTCTGGACACACACCAACGCGGCCAC
CTGCCACCTGCCTGCCTTACCACCCCGACATTCGGCGAGAACCTGGTGCC
ACTCGTGCTCGCCTCCTTCCCTCGTCTAGAGTCCGTGGCCTCTCTTTGTC
AAGGGTTTACACCCCGACCAGGAGCTGAGTTTACACCCCGACCAGGAGCT
GA
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