mRNA_H-canaliculatus_F_contig1531.3939.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1531.3939.1
Unique NamemRNA_H-canaliculatus_F_contig1531.3939.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1531.3939.1 vs. uniprot
Match: D7FRJ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRJ7_ECTSI)

HSP 1 Score: 394 bits (1013), Expect = 1.530e-128
Identity = 182/355 (51.27%), Postives = 247/355 (69.58%), Query Frame = 2 
Query:    2 ENAPRVDLVCRTYGGSLHIMWNTFFPSYLLFWPVRAWKSSRLVVILDAESPGDREKGTVLEHLTFASMVRVKYEAQPPEGTLCSDWRREGYSRQQYSNFYADLYTDAEFLAIVDTDSAFRVPVVPSDLFEGGKPIVKGFNQESDWTSHVSTIAIGGHESVGRFMTRYSFPVVLRASDMPKIRSGIAKNMGAATFEEAFHFLCSAGAGTYSQFEIILNYVWYNMRDGYAWHIADPASGAFEEISGHTKARATTNEAVLSKNVPTVLPMRHMGKAIDTGSIGPSSLFRNLCNGSGYQAGYCQTLDPTENDGVPITAKWTAGGVTWLDTYQEHLRQVGAALPAFDWHREAPEDWVIPG 1066
            +NAPR+DLVCRTYG ++ I W TF P+YL+FWP+ +WKSS LVVILD +S  D   GT+L+++   S V+VKYE   P GTLC++WR EGY+RQQYSNFYADLYTDA+++ I+DTD+AF  PVVPSDLF+ GKPI++G N  + W S  S  A GG   VGRFMTR +FP+++++    ++R  IA+N+GA TFEEAF  +CSAG  +YSQFEI++NY+WY   D Y+WHIAD  +G F  ++   +ARA+ + +V++ NVP +  M+H+    D  ++    ++ N+C GS  +AG CQ   P +NDG   T KW+ G  TW DTY++H R+V  A  AF W  E  EDWV  G
Sbjct:   53 QNAPRIDLVCRTYGAAIQIFWQTFIPTYLMFWPISSWKSSGLVVILDGDSAFDHRIGTLLQNINLPSKVQVKYETPAPPGTLCNNWRSEGYARQQYSNFYADLYTDADYMGIIDTDAAFISPVVPSDLFDEGKPILRGMNIITQWQSETSRKATGGFPYVGRFMTRIAFPIIIKSEHFSQMRQVIAENLGAETFEEAFKVICSAGKESYSQFEIMINYLWYYHHDEYSWHIADRDNGDFHGLNLQGRARASDDGSVVAANVPAIFVMKHLDDK-DVFTLN-DDMYENVCLGSNNEAGNCQRRPPAQNDGHAQTLKWSVGSTTWGDTYKDHSRRVSRAGSAFQWRGEEDEDWVHVG 405
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BLAST of mRNA_H-canaliculatus_F_contig1531.3939.1 vs. uniprot
Match: A0A3M7T151_BRAPC (Uncharacterized protein n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7T151_BRAPC)

HSP 1 Score: 236 bits (601), Expect = 9.860e-67
Identity = 132/368 (35.87%), Postives = 195/368 (52.99%), Query Frame = 2 
Query:    2 ENAPRVDLVCRTYGGSLHIMWNTFFPSYLLFWPVRAWKSSRLVVILDAESPGDREKGTVLEHLTFASMVRVKYEAQPPEGTLCSDWRREGYSRQQYSNFYADLYTDAEFLAIVDTDSAFRVPVVPSDLFEGGKPIVKGFNQE-SDWTSHVSTIAIGGHESVGRFMTRYSFPVVLRASDMPKIRSGIAKNMGAATFEEAFHFLCSAGAGTYSQFEIILNYVWYNMRDGYAWHIADPASGAFEEISGHTKARATTNEA--VLSKNVPTVLPMRHMGKAIDTGSIGPSSLFRNLCNGSGYQAGYC----------QTLDPTENDGVPITAKWTAGGV---------------------TWLDTYQEHLRQV 1003
              +P V ++CR Y GS+   +N F+ S+L+FWP + WK+S +V++LD+E+  D   G+VL HL      +V +E  P + T CS+WR  GYSR QYSNFY+DLYTD E++AIVD+DS F   V P DLF  GKP + G+N   + W + +      G + +G FM R +FP++++ +   +IR  I K M   TFEEAFH +CS   G YSQF+++++Y+WY  R+ Y+WH+ D       E   +   +  TN+   +   N P +   +H G  ++  +     +F  +C  S  QAG C          QTL     D    T  WT  G+                     ++LD Y +HLR V
Sbjct:   83 SGSPDVTVLCRAYSGSVMEFYNMFYLSFLIFWPHKTWKNSDMVIVLDSENELDHRMGSVLAHLY--PYPKVFFEKMPQKATFCSNWRNIGYSRTQYSNFYSDLYTDKEYIAIVDSDSYFVAQVTPEDLFVDGKPRIIGYNGCCTRWLNSIKEAL--GVDPLGEFMNRGNFPIIIKRNHFKQIRMHITKTMATRTFEEAFHSICSKYKGQYSQFDLLVHYLWYFKRNEYSWHLKDVL-----EFGHYRMPKRATNDTDVIQMNNKPMISVAKHAGSLLNYPNYMFKIMFDYMCVASDNQAGSCGSLFGKELFNQTLKNLFVDYPHQTTNWTKRGMLASLHRSKITERPWASKKDNLSYLDYYNKHLRNV 441
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BLAST of mRNA_H-canaliculatus_F_contig1531.3939.1 vs. uniprot
Match: A0A6H5K9S0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S0_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 1.920e-59
Identity = 108/238 (45.38%), Postives = 149/238 (62.61%), Query Frame = 2 
Query:  368 VVPSDLFEGG-KPIVKGFNQESDWTSHVSTIAIGGHESVGRFMTRYSFPVVLRASDMPKIRSGIAKNMGAATFEEAFHFLCSAGAGTYSQFEIILNYVWYNMRDGYAWHIADPASGAFEEISGHTKARATTNEAVLSKNVPTVLPMRH--MGKAIDTGSIGPSSLFRNLCNGSGYQAGYCQTLDPTENDGVPITAKWTAGGVTWLDTYQEHLRQVGAALPAFDWHREAPEDWVIPGSD 1072
            VVPSDLF+   KP +KG N  S W S V+  AIGG ESVGRFMT   FPV++++     +R  I +N+GAATF EAFH +CS GA +YSQFEI++ Y+WYN  D Y+WHIADPA+   + ++   K R   ++ V++ NVP ++ M+H  +  +ID      S  +  LC GS   AG CQ+  P+  DG   T +W+ G  TW+ TY+EH  ++  A  AF W RE  +DW+ PG+D
Sbjct:   19 VVPSDLFDDDRKPFIKGVNCGSPWRSEVTKRAIGGVESVGRFMTPMIFPVIVKSDHFDDMRRDITRNLGAATFAEAFHMICSEGANSYSQFEIMVTYLWYNKHDEYSWHIADPANMDAKSLNIGDK-RYYEDDRVVATNVPVIVVMKHSKIRTSID------SDTYDYLCLGSNNLAGNCQSRVPSPLDGSAQTVQWSVGNQTWMHTYEEHSTKLSRAGKAFRWRRETAQDWIHPGAD 249
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BLAST of mRNA_H-canaliculatus_F_contig1531.3939.1 vs. uniprot
Match: A0A3P3YPH4_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YPH4_PLABS)

HSP 1 Score: 197 bits (502), Expect = 3.190e-53
Identity = 133/355 (37.46%), Postives = 182/355 (51.27%), Query Frame = 2 
Query:   11 PRVDLVCRTYGGSLHIMWNTFFPSYLLFWPVRAWKSSRLVVILDAESPGDREKGTVLEHLT-FASMVRVKYEAQPPEGTLCSDWRREGYSRQQYSNFYADLYTDAEFLAIVDTDSAFRVPVVPSDLFEGGKPIVKGFNQE-SDWTSHVSTIAIGGHESVGRFMTRYSFPVVLRASDMPKIRSGIAKNMGAATFEEAFHFLCSAGAGTYSQFEIILNYVWYNMRDGYAWHIADPASGAFEEISGHTKARATTNE----AVLSKNVPTVLPMRHMGKAIDTGSIGPSSLFRNLCNGSGYQAGYCQTLDPTENDGVPITAKWTAGGVTWLDTYQEHLRQVGAALPAFDWHREAPEDWV 1057
            PR  +VCR Y G+    W  F   + LFWP RAW +S +VV+LDAES  D    +VL  L  F ++V   +EA+P  G LC+ +R EGY RQ YSNF+AD  T+A+F+  VD+D+ F  PV   DLF GGKP V  +N   + W S +   AIGG + V  FMT  SFP ++       +R+ IA+ +GAATF++AFH +C+     YSQ++++ +Y+WY  RD YAWH   P         GH   +A  ++        +  P V  M+ +G + D GS+        L   S Y               V + A WTA G   L           AA P    HR+A ED V
Sbjct:   52 PRFSIVCRMYSGTAPEWWQAFVVGHQLFWP-RAWTNSDVVVVLDAESAHDWRVASVLSRLPPFPAVV---FEAKPGPGVLCASFRSEGYCRQMYSNFFADRQTEADFVGFVDSDTMFITPVAVGDLFVGGKPRVSAYNGCCTGWNSPIER-AIGG-KPVAEFMTSSSFPFIVHRGHFAPMRAHIARTLGAATFDDAFHTICAEYGEQYSQYDLMGHYLWYAHRDDYAWHFRAPR--------GHDAFQAAQSDDADVLAAMQTRPAVSLMKMIGHS-DFGSL--------LTVWSDY---------------VCVAANWTAPGCPLL-----------AASP----HRDAIEDGV 353
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BLAST of mRNA_H-canaliculatus_F_contig1531.3939.1 vs. uniprot
Match: A0A0G4J7L3_PLABS (Uncharacterized protein (Fragment) n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J7L3_PLABS)

HSP 1 Score: 176 bits (446), Expect = 4.990e-47
Identity = 99/224 (44.20%), Postives = 137/224 (61.16%), Query Frame = 2 
Query:   38 YGGSLHIMWNTFFPSYLLFWPVRAWKSSRLVVILDAESPGDREKGTVLEHLT-FASMVRVKYEAQPPEGTLCSDWRREGYSRQQYSNFYADLYTDAEFLAIVDTDSAFRVPVVPSDLFEGGKPIVKGFNQE-SDWTSHVSTIAIGGHESVGRFMTRYSFPVVLRASDMPKIRSGIAKNMGAATFEEAFHFLCSAGAGTYSQFEIILNYVWYNMRDGYAWHIADP 703
            Y G+    W  F   + LFWP RAW +S +VV+LDAES  D    +VL  L  F ++V   +EA+P  G LC+ +R EGY RQ YSNF+AD  T+A+F+  VD+D+ F  PV   DLF GGKP V  +N   + W S +   AIGG + V  FMT  SFP ++       +R+ IA+ +GAATF++AFH +C A  G + Q++++ +Y+WY  RD YAWH   P
Sbjct:    2 YSGTAPEWWQAFVVGHQLFWP-RAWTNSDVVVVLDAESAHDWRVASVLSRLPPFPAVV---FEAKPGPGVLCASFRSEGYCRQMYSNFFADRQTEADFVGFVDSDTMFITPVAVGDLFVGGKPRVSAYNGCCTGWNSPIER-AIGG-KPVAEFMTSSSFPFIVHRGHFAPMRAHIARTLGAATFDDAFHTIC-AEYGEH-QYDLMGHYLWYAHRDDYAWHFRAP 217
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BLAST of mRNA_H-canaliculatus_F_contig1531.3939.1 vs. uniprot
Match: A0A6H5JZ07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ07_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.870e-40
Identity = 72/140 (51.43%), Postives = 93/140 (66.43%), Query Frame = 2 
Query:    2 ENAPRVDLVCRTYGGSLHIMWNTFFPSYL------------------LFWPVRAWKSSRLVVILDAESPGDREKGTVLEHLTFASMVRVKYEAQPPEGTLCSDWRREGYSRQQYSNFYADLYTDAEFLAIVDTDSAFRVP 367
            +NAPRVDLV RT+ G +   W+ F PS+L                  LFWP+ +W SS +VVILD E+  D E GT+L+H+ F  + +VKYEA  P GTLC DWR+EGY+RQQYSNFY +LYTDAE++AI+DTD+    P
Sbjct:   38 KNAPRVDLVTRTFAGGVKAFWDIFLPSFLVSRGGNAWQVDSNVVPSQLFWPISSWTSSGVVVILDGENALDHEAGTILQHMNFPFVFQVKYEAPAPNGTLCGDWRKEGYARQQYSNFYGNLYTDAEYVAIIDTDTKIIAP 177
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BLAST of mRNA_H-canaliculatus_F_contig1531.3939.1 vs. uniprot
Match: A0A7S4LJY0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LJY0_9EUGL)

HSP 1 Score: 127 bits (318), Expect = 8.360e-27
Identity = 85/247 (34.41%), Postives = 119/247 (48.18%), Query Frame = 2 
Query:    2 ENAPRVDLVCRTYGGSLHIMWNTFFPSYLLFWPVRAWKSSRLVVILDAESPGDREKGTVLEHLTFASMVRVKYEAQPPEGTLCSD--WRREGYSRQQYSNFYADLYTDAEFLAIVDTDSAFRVPVVPSDLF-EGGKPIVKGFN-------------QESDWTSHVSTIAIGGHESVGRFMTRYSFPVVLRASDMPKIRSGIAKNMGAATFEEAFHFLCSAGAGTYSQFEIILNYVWYNMRDGYAWHI 694
            +N P   +  RT+      +   F+ S  LFW  + +    LV+ LD +SP D + G  L ++       VKY+  PP   L +    R EG+ R  +S F+AD +TDA+ +A++D D  F  PV P  LF + GKPIV G                   W   V+T    G   V  FM    FP+++  SD    R  IA  +G  TF +AF    +  A +Y+QF IILN+ WYN RD Y WH+
Sbjct:  256 QNLPSFQIWIRTHAPGNEKLLAIFYESLRLFW--KDFPEKTLVLTLDDDSPEDHQYGDYLTNMW--PFPTVKYQPPPPRDVLTAPACGRTEGFDRMMHSVFFADEWTDADIVAVMDNDGMFVAPVTPRHLFSKDGKPIVIGKQILYTRGQTFKLGAPLGKWA--VATEMALGQPMVADFMVH--FPIMIWRSDFELFRQHIANTIGNGTFNDAFRRFAT-DANSYNQFNIILNWAWYNRRDAYDWHL 493
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BLAST of mRNA_H-canaliculatus_F_contig1531.3939.1 vs. uniprot
Match: A0A7S1J303_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J303_9EUGL)

HSP 1 Score: 99.8 bits (247), Expect = 8.170e-20
Identity = 61/172 (35.47%), Postives = 92/172 (53.49%), Query Frame = 2 
Query:  239 GTLCSDWRREGYSRQQYSNFYADLYTDAEFLAIVDTDSAFRVPVVPSDLF-EGGKPIVKG------FNQESDWTSHVSTIAIGGHESVGRFMTRYSFPVVLRASDMPKIRSGIAKNMGAATFEEAFHFLCSAGAGTYSQFEIILNYVWYNMRDGYAWHIADPASGAFEEISG 733
            G +C   R  GY RQ YS F+AD +TDAE +AIVD DS F     P  LF E G+P+V G        + +   +H + +A+G  + V  FM  ++FP++++ +    +R  I++ +   TF+EAF  +      +Y Q  IILNY W+  RD Y WH++         I+G
Sbjct:    3 GGICG--RNTGYDRQMYSGFFADCFTDAEVIAIVDNDSLFTTVPTPGSLFSEDGRPVVIGKQSLYNIGKLAGRWAHATEVALGLPQ-VADFM--FNFPILIKRNVFGAVRRHISQQLN-TTFDEAFRIIAK-DPDSYCQINIILNYAWHFHRDEYKWHLSSMPGSKGPMING 167
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1531.3939.1 vs. uniprot
Match: A0A8B7DXY3_HYDVU (uncharacterized protein LOC105847846 n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7DXY3_HYDVU)

HSP 1 Score: 95.9 bits (237), Expect = 1.980e-17
Identity = 71/213 (33.33%), Postives = 100/213 (46.95%), Query Frame = 2 
Query:   71 FFPSYLLFWPVRAWKSSRLVVILDAESPGDREKGTVLEHLTFASMVRVKYEAQPPEGTLCSDWRREGYSRQQYSNFYADLYTDAEFLAIVDTDSAFRVPVVPSDLFEGGKPIVKGFNQESDWTSHVSTIAIGGHESVGRFMTRYS-FPVVLRASDMPKIRSGIAKNMGAATFEEAF-HFLCSAGAGT---YSQFEIILNYVWYNMRDGYAWHI 694
            F  S  LFWP   +    L ++L+AE PGDR  G  +  +      +V Y  + P      D +     R  Y  F+ DLYT+AEF+  VDTD+ F  PV P  LFEG KPIV G      + S    +       V + M   S FPV ++ + +  +R+ I K  G   F E F   +   G GT     QF ++ NY++   RD Y++ I
Sbjct:  126 FLKSLKLFWPQELYN---LTIVLNAEVPGDRILGNQIASMW--PFPKVAY-IEKPTAIAIGDKKNSDRFRMYYDAFFPDLYTEAEFIGFVDTDTLFITPVTPQSLFEGNKPIVIGIAGNVYYASCTEFML-----KVKQLMICMSYFPVTIKVAHLVLMRAHIEKLHG-KNFSEVFGEAVLRVGGGTDGCLCQFAVMCNYIYRFHRDEYSFRI 326
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1531.3939.1 vs. uniprot
Match: A0A7S4FP96_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FP96_9EUGL)

HSP 1 Score: 90.1 bits (222), Expect = 2.420e-16
Identity = 57/151 (37.75%), Postives = 79/151 (52.32%), Query Frame = 2 
Query:  269 GYSRQQYSNFYADLYTDAEFLAIVDTDSAFRVPVVPSDLF-EGGKPIVKGFNQESD------WTSHVSTIAIGGHESVGRFMTRYSFPVVLRASDMPKIRSGIAKNMGAATFEEAFHFLCSAGAGTYSQFEIILNYVWYNMRDGYAWHIAD 700
            GY +QQYSNF+ADLY+ A+ +AI+D+DS F     P + F E G+P V G    S       W S  + +A+   +    FM   +FP+ +     P +R  + K+ G   F++ F  +       YSQF IILNY WY MRD  AW   D
Sbjct:   19 GYHQQQYSNFFADLYSTADVIAIMDSDSVFATVQTPEEWFDEAGRPFVVGVQHWSAREPNGRW-SRATALALNKPQHAD-FMV--NFPIRIPRQVFPALRQFLEKSHG-MPFDKVFFKISDCCEKGYSQFNIILNYAWYFMRDTIAWRFHD 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1531.3939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FRJ7_ECTSI1.530e-12851.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A3M7T151_BRAPC9.860e-6735.87Uncharacterized protein n=1 Tax=Brachionus plicati... [more]
A0A6H5K9S0_9PHAE1.920e-5945.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3P3YPH4_PLABS3.190e-5337.46Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A0G4J7L3_PLABS4.990e-4744.20Uncharacterized protein (Fragment) n=1 Tax=Plasmod... [more]
A0A6H5JZ07_9PHAE1.870e-4051.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4LJY0_9EUGL8.360e-2734.41Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S1J303_9EUGL8.170e-2035.47Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A8B7DXY3_HYDVU1.980e-1733.33uncharacterized protein LOC105847846 n=2 Tax=Hydra... [more]
A0A7S4FP96_9EUGL2.420e-1637.75Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1531contigH-canaliculatus_F_contig1531:4699..9979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue6.2e-15
Seed eggNOG ortholog45351.EDO35365
EggNOG OGs2EQQW@1,2STPK@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-09_000180.1
Exons7
Model size1993
Cds size1017
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929269.250152-UTR-H-canaliculatus_F_contig1531:4698..50141622929269.250152-UTR-H-canaliculatus_F_contig1531:4698..5014Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1531 4699..5014 -
1696845743.8328536-UTR-H-canaliculatus_F_contig1531:4698..50141696845743.8328536-UTR-H-canaliculatus_F_contig1531:4698..5014Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1531 4699..5014 -
1622929269.2634795-UTR-H-canaliculatus_F_contig1531:5026..56281622929269.2634795-UTR-H-canaliculatus_F_contig1531:5026..5628Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1531 5027..5628 -
1696845743.8432884-UTR-H-canaliculatus_F_contig1531:5026..56281696845743.8432884-UTR-H-canaliculatus_F_contig1531:5026..5628Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1531 5027..5628 -
1622929269.395397-UTR-H-canaliculatus_F_contig1531:9921..99791622929269.395397-UTR-H-canaliculatus_F_contig1531:9921..9979Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1531 9922..9979 -
1696845743.9115303-UTR-H-canaliculatus_F_contig1531:9921..99791696845743.9115303-UTR-H-canaliculatus_F_contig1531:9921..9979Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1531 9922..9979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929269.2792783-CDS-H-canaliculatus_F_contig1531:5628..58171622929269.2792783-CDS-H-canaliculatus_F_contig1531:5628..5817Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1531 5629..5817 -
1696845743.85345-CDS-H-canaliculatus_F_contig1531:5628..58171696845743.85345-CDS-H-canaliculatus_F_contig1531:5628..5817Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1531 5629..5817 -
1622929269.2914767-CDS-H-canaliculatus_F_contig1531:6357..64961622929269.2914767-CDS-H-canaliculatus_F_contig1531:6357..6496Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1531 6358..6496 -
1696845743.8618605-CDS-H-canaliculatus_F_contig1531:6357..64961696845743.8618605-CDS-H-canaliculatus_F_contig1531:6357..6496Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1531 6358..6496 -
1622929269.329073-CDS-H-canaliculatus_F_contig1531:7014..73931622929269.329073-CDS-H-canaliculatus_F_contig1531:7014..7393Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1531 7015..7393 -
1696845743.870281-CDS-H-canaliculatus_F_contig1531:7014..73931696845743.870281-CDS-H-canaliculatus_F_contig1531:7014..7393Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1531 7015..7393 -
1622929269.3432121-CDS-H-canaliculatus_F_contig1531:7959..80891622929269.3432121-CDS-H-canaliculatus_F_contig1531:7959..8089Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1531 7960..8089 -
1696845743.8793876-CDS-H-canaliculatus_F_contig1531:7959..80891696845743.8793876-CDS-H-canaliculatus_F_contig1531:7959..8089Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1531 7960..8089 -
1622929269.3556366-CDS-H-canaliculatus_F_contig1531:8714..88641622929269.3556366-CDS-H-canaliculatus_F_contig1531:8714..8864Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1531 8715..8864 -
1696845743.891692-CDS-H-canaliculatus_F_contig1531:8714..88641696845743.891692-CDS-H-canaliculatus_F_contig1531:8714..8864Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1531 8715..8864 -
1622929269.3826675-CDS-H-canaliculatus_F_contig1531:9891..99211622929269.3826675-CDS-H-canaliculatus_F_contig1531:9891..9921Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1531 9892..9921 -
1696845743.902891-CDS-H-canaliculatus_F_contig1531:9891..99211696845743.902891-CDS-H-canaliculatus_F_contig1531:9891..9921Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1531 9892..9921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1531.3939.1prot_H-canaliculatus_F_contig1531.3939.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1531 5629..9921 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1531.3939.1

>prot_H-canaliculatus_F_contig1531.3939.1 ID=prot_H-canaliculatus_F_contig1531.3939.1|Name=mRNA_H-canaliculatus_F_contig1531.3939.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=339bp
MWNTFFPSYLLFWPVRAWKSSRLVVILDAESPGDREKGTVLEHLTFASMV
RVKYEAQPPEGTLCSDWRREGYSRQQYSNFYADLYTDAEFLAIVDTDSAF
RVPVVPSDLFEGGKPIVKGFNQESDWTSHVSTIAIGGHESVGRFMTRYSF
PVVLRASDMPKIRSGIAKNMGAATFEEAFHFLCSAGAGTYSQFEIILNYV
WYNMRDGYAWHIADPASGAFEEISGHTKARATTNEAVLSKNVPTVLPMRH
MGKAIDTGSIGPSSLFRNLCNGSGYQAGYCQTLDPTENDGVPITAKWTAG
GVTWLDTYQEHLRQVGAALPAFDWHREAPEDWVIPGSD*
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mRNA from alignment at H-canaliculatus_F_contig1531:4699..9979-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1531.3939.1 ID=mRNA_H-canaliculatus_F_contig1531.3939.1|Name=mRNA_H-canaliculatus_F_contig1531.3939.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5281bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1531:4699..9979- (Hapterophycus canaliculatus Oshoro5f female)
GGAAAATGCGCCTCGGGTGGACTTGGTCTGCCGAACGTACGGGGGCAGCT
TGCACATCATGTGGAACACCTTTTTTCCGAGTTACCTGGCGAGTCGAGTT
GAGCGTTGGCTGCGGATGCTTGTTTGTTCCTAGAGGACAACGTCAGCCGC
CAAGACCGAGTCGGACGTTCCTCGTGCAACCCTACCCTACACGAAAACAT
GCCTGGTACCAGGCATCTCGTTTTCAGCAGCCGCGGGACGACGATGTTTC
GGTCGCCGATGGAACGAAGCTGATGACAGTGCACTTGCATTTCGATCCAA
CACACAGAGGGGGTGCAACTCGTTCTTCGCTTGGCGGTACATTGTTATCG
ACGCGATCACCTACCACCTAATGTGCTTCAACGATGAAGATTCACGAGAC
AATACGAGGCTCTGCAAAACAAGACGTCCGCGGGTGTCTTCGATGTGGCA
TATTGCTGTAGCAGGCGACGAAGACGGCACGCACCGTTTAGAATTGGCTG
CGCGGTCTCTCCGCAGTTACGAGGAGAATCGTAACGCAGATTTTTTGTTA
GTTTTGCAAGAAAAACTACAGCGACGTTAGTCGCTTCTTCTGCAATACTA
CATCTCCTGTCGTAGATCTAATAAACTGGACGGTGCGGCTGGGCTTGGTT
TGGTTTGTGGGTGAAGCTCGAGCGGTCAGAGAAGAAGAGAAGGCGAGAAG
GATCCTCCCGGTGGCAATGTTCATGTTTCCCCCGTCACTGAAGCCCAGAC
AAAGATGTAGAACGTGGCATGGACACCTTCGCACCGCGTGCAAATTATTT
CTTGGAGGGGATTCACGTACCCATCACCCCTTTTTCAAACCCCTTGCTTG
GTGGTCTGCAAGCTGTTGCCTTCGCCTCCTGTGGTTGTTTCTGTCTACTT
CCGTCTCCACCGCCCGTGTTCACGCGAACGACATGTTTTTCCATCTTGTG
TGTCCGCGCGCCTTCGCCTTCTCAAACCGTGCACGCGTTCCGTCTTCGGT
TGTCATCGAGCATGCCCGTCGATTGGCCATCGGCTCTCCCTTCATCGCTA
CGCTCCTCGCTCTCGCTTTCGTGCTCTGCGCGTTGCGTGCTCTTGTCCGA
AACTTATCGGCAAAGCTTTTCTGGCCTGTGCGGGCATGGAAGTCGAGCCG
GCTAGTCGTCATCCTAGACGCAGAAAGCCCTGGCGATCGTGAGAAAGGGA
CGGTTTTGGAGCATCTTACCTTCGCGTCGATGGTGCGGGTGAAGTACGAG
GCTCAACCACCCGAGGTGCGTACTGTAGGCATATCGACAGACCATAACCG
TCGTCAATTCCTCCCGCTGTTCCCAACCTCATCCCACTTGTGGTGCGTCT
CTTGGCACACCGGTCGTAGGTATCTCGTTTTTCAGTTTTTCCTCCCAGTG
TCCTTGATTTCGTCGGAAATCATGGAGTTGCCTTTCTTGGACATCTCGGT
CAGTCGGTGTTTCGCGTTTCGGCTTTGCTGCTCTTAATGTTTGCGCGCAT
TCATGTATGTGCGTGGTATACCTCGCGTACGATTGCCGATTGTTTTTGCT
GCCAATGCTTGACCTCCTAGTTTCAAATGCCCTTACCATGTTGCACAACG
TCGCTCTCTCCTCCCCCAAAACCTGTGCATCGTTTCAGAGCGCCAGCGCA
CGTGTTCTTGTTCCGAAGGCACTTGCTGCCTTCTCCTCCTCTCTTTTCTT
CCGCTGGGCACACGTGTCGCGCTCATGCGTTCATGAATGGATCCATTGTT
CTGTAATCCACGTCCATGAATGGATGCATAGCATTGTTCGGTAATCCATT
CCTCGCGTGTTCTTCCTTCCTCATCGACGCCACTGGTCGTCTGTGTCGTC
GGCTCATGCGCTCGCGTCCTTCTGCGCACGCGGTCAACAGGGCACCCTGT
GCTCCGACTGGCGAAGGGAGGGGTACTCCAGGCAGCAGTACTCCAACTTC
TACGCCGACTTGTACACAGACGCGGAATTCTTGGCGATCGTTGATACCGA
CTCCGCCTTTCGAGTGCCCGGTGAGTGTCTTCAAGTGTGGCCTGTTGCCA
GCACCACGCTCGAGCCAAAAAGTGCGATGGTGTTGACCCTCCGGATATTG
CTGTGGCGTCGTCGTTTATGGTACGCAGTGAACCCCTATTGCATCATACT
TTGCCGCTATGCTTCCCTTGCCTGTTTGCCTATTGGGTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCCTCTCTC
CTCTCTTCGTCACTTTGCACCTTCAGGGTTAGGGGTAGGGGTAGGGGTAG
GGGCTGGTGCGTGCCTTCGGGCGGGGTGCATACGCTTTGAAGCGTTCGTT
ACCCGTAAGAACGAGGTTACCATCGGTTCTTCATCACGACTCCAACTTCT
TAATGGTTGTCCTTACCAGTACAGATATGTGTTCCACAGACACCGTCTGC
AGGAGAATAAATAGCTGGAGGGATCCGCCCCATTCCACTAATCGAGCCAA
GAGCAGCGGGCAAGCATACCCTGTTGCTCACTTGCGTCTATTTTCCCGCG
CGATATCGCTGTTGATGCGTGACATCGCCCAACCAGTGGTTCCGTCCGAT
CTCTTCGAGGGTGGCAAGCCTATCGTGAAGGGCTTCAATCAGGAGAGCGA
CTGGACGAGTCATGTTTCCACGATAGCGATCGGGGGACACGAAAGCGTCG
GCAGGTTCATGACGAGGTACAGTTTTCCGGTGGTCCTGAGAGCATCCGAC
ATGCCGAAGATTAGGTCGGGCATCGCGAAAAACATGGGCGCGGCGACTTT
CGAAGAAGCGTTCCACTTTCTATGCTCTGCCGGAGCGGGAACCTACTCCC
AGTTCGAGATCATCCTGAACTACGTGTGGTACAACATGCGTGACGGCTAC
GCTTGGCACATCGCGGACCCCGCTTCCGGCGCCTTCGAAGAGATTTCGGG
GCACACAAAAGCTCGGTGAGGCGCGAGGTGGTGTGTGTGCGCGTGGCATG
TTTGCAGCCACCCGGCGATTGTACTGCCACTTGGCGACTGTGTCTCCTGC
ATGTTCCCGTTCGTGAGCTGGACCGTTGGAATCTCGTGTGTGGCTCACTT
CGCTGTGCAGATGGCGAAAACACGAAGTGCACATTCTACCTGTCGAGAGG
CGACGTGAGCGAGGCTGCAAGCTGCTCTGTTCATCACACACCCGGTCACC
TCTGCATCCACCCATGCATTTTGGGAACGGGTCAGATGAAACTCCCTCGC
CAATTCACCGGCAGCATCCCAACCCCTGCTCTCAAAGTTTGTTTTTAAGA
CAGAGTCGACAACACCAACGGAATACCTTTCTTGAAATCATAGCGATCCA
GAGGGATTGTGTTGAAAGTCCTAGTCCTTAACTTGTTTGTTTAACGTCGC
ACGCCCTCCACTCTTGTGTCGAATTTCTCCGTGCGCGTCCCCTCGTGGGG
CTGTGTCCCACTGGATCGCCGTGGTTTGAACAGCGCCACCACGAACGAGG
CGGTGCTGTCAAAAAATGTCCCAACAGTCTTACCGATGAGACACATGGGA
AAGGCGATCGACACCGGGTCGATCGGACCTTCGTCGTTGTTTCGGAACCT
CTGCAACGGAAGCGGCTATCAGGTATTCAATCGCTGGCAGTGAACATTGA
AGAGTGGCTTGCTTCGCGCCTTGCTGTTCCTAGCCAACTTCTTCGCTTCA
AAGCCTCCCTCCCTGCAGCAGACCACCCCTTTGAATCCCACTTTTCTTGA
TCTGTGCGTCACCTTCGAAGCGCTTCTCATTTCCAGTAGTTGTAGTCCTT
GTCTACTGCGGAAGGGGGCCACATGTTGCAGCAGTTTGGTCTCGTAGCTC
AGCGGCATAACTCCGGGAATGATAGTTCAATCTCCCCTGTCTCTGGGTAG
GGCAAAAATACAGCCAGAGAAATGGAAACGTAGGATCAACAATCTCCCCC
CTTTCGACTTGTTCCTCTCGGGGTTCGGTGCAGTGCGTCCTTGGTTGCAA
CCCGCGTGCTCCCGTGTTTGGGGACCAATGCTTTGGGGCGCTCTAGCTCA
ACTGCAGCGTTGCTTCGCCGAAAGAGATGCATCGAAGAATGGTGTATCGA
AGGACTATTTCGCCTTCCCTTTATTCTCCGGCTCGCTGCGTTTTTCTGCG
CTGCTTCATCAGGCCGGGTATTGCCAGACACTGGATCCCACGGAGAACGA
CGGGGTGCCGATAACGGCAAAGTGGACGGCTGGAGGCGTCACCTGGCTTG
ACACGTACCAAGAGCACCTACGGCAGGTCGGGGCAGCGCTTCCGGCGTTT
GATTGGCACCGTGAGGCTCCCGAAGACTGGGTTATTCCCGGTAGCGATTA
GTTGTTGTCGCATATATATGCTCGTTTCCCAGCGAGTGGTTCAAGATCAG
ACACTTTTGGGAGGGCCATTAATGCTGATTTCCCTTGTACGAATGCTATT
TTCAGGTACAGCACTAGTAAGGGATTATAGATGAGAACTTGATGGGCACC
GAACGATCTCCAAAATTTCCTGCAGTTTTGTGTTGCGCTCTGGAGGAAGG
GCCCTTGCTGTTCGCATTTGGGGAGATGCATTTGGGGTGCTTTTTCAACA
ACGATCAACAACGATCATACGCGGTAAACGGTGGTAACCGGGGATTCGGG
TGGTTGCGAGTAGGACCTAGTCCACCAGCGCTGTGCTGACGCGGGCAGTG
GGGAGGGTTTCAAGTAGGTGGGCGTGATTGTGGGTGCGTGTATGTCAGTG
CTGTGCGTGTCTGTTGACGTGTTTGCTTGGTCTCGCCCGTATTTATTGCA
AACAATGTGATCGCCTTAAAAAAACAAAGCGCTCTCCACGTAGATCGGAA
CATCGTGTGGAGTCCGAATTTTGACGAGTAACATTGATAGTCTTGTTGCG
ACGATGACATTGACGTTGCCATTTACACCGACCAACTGTCTTTCTTTCTT
TCTTTCTTACTTTCTCTCTTTGTGGTGGTGTTGGTGTTGGCATTTCTGTT
AGTTGTGCGGTTAGTTGGCCTTGGCCTTGCCTTGGGAGAGGACAGGTTTG
GAGACCCCGGGCCTAAGTCTGGAGTGAACGGAGTGCAGGCCGGGGGATTC
GGGACGAGGTTGTAAACGCCCCGAGGTTCGATCTCTCAGTTAGTTTCGCG
AGCCGGGATCGAAAGCATTGTCCTTCTGTATTCCATGATAGTGCTTTCGA
TTGTTGAAAGGGGGGATTGCGGAAATAAAGAGGGTCTCCCCCTCTGTCCG
TTGTCGGTCTTTTTCAGGACGTAGTTTCTTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1531:4699..9979-

>mRNA_H-canaliculatus_F_contig1531.3939.1 ID=mRNA_H-canaliculatus_F_contig1531.3939.1|Name=mRNA_H-canaliculatus_F_contig1531.3939.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2034bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1531:4699..9979- (Hapterophycus canaliculatus Oshoro5f female)
ATGTGGAACACCTTTTTTCCGAGTTACCTGATGTGGAACACCTTTTTTCC
GAGTTACCTGCTTTTCTGGCCTGTGCGGGCATGGAAGTCGAGCCGGCTAG
TCGTCATCCTAGACGCAGAAAGCCCTGGCGATCGTGAGAAAGGGACGGTT
TTGGAGCATCTTACCTTCGCGTCGATGGTGCGGGTGAAGTACGAGGCTCA
ACCACCCGAGCTTTTCTGGCCTGTGCGGGCATGGAAGTCGAGCCGGCTAG
TCGTCATCCTAGACGCAGAAAGCCCTGGCGATCGTGAGAAAGGGACGGTT
TTGGAGCATCTTACCTTCGCGTCGATGGTGCGGGTGAAGTACGAGGCTCA
ACCACCCGAGGGCACCCTGTGCTCCGACTGGCGAAGGGAGGGGTACTCCA
GGCAGCAGTACTCCAACTTCTACGCCGACTTGTACACAGACGCGGAATTC
TTGGCGATCGTTGATACCGACTCCGCCTTTCGAGTGCCCGGGCACCCTGT
GCTCCGACTGGCGAAGGGAGGGGTACTCCAGGCAGCAGTACTCCAACTTC
TACGCCGACTTGTACACAGACGCGGAATTCTTGGCGATCGTTGATACCGA
CTCCGCCTTTCGAGTGCCCGTGGTTCCGTCCGATCTCTTCGAGGGTGGCA
AGCCTATCGTGAAGGGCTTCAATCAGGAGAGCGACTGGACGAGTCATGTT
TCCACGATAGCGATCGGGGGACACGAAAGCGTCGGCAGGTTCATGACGAG
GTACAGTTTTCCGGTGGTCCTGAGAGCATCCGACATGCCGAAGATTAGGT
CGGGCATCGCGAAAAACATGGGCGCGGCGACTTTCGAAGAAGCGTTCCAC
TTTCTATGCTCTGCCGGAGCGGGAACCTACTCCCAGTTCGAGATCATCCT
GAACTACGTGTGGTACAACATGCGTGACGGCTACGCTTGGCACATCGCGG
ACCCCGCTTCCGGCGCCTTCGAAGAGATTTCGGGGCACACAAAAGCTCGT
GGTTCCGTCCGATCTCTTCGAGGGTGGCAAGCCTATCGTGAAGGGCTTCA
ATCAGGAGAGCGACTGGACGAGTCATGTTTCCACGATAGCGATCGGGGGA
CACGAAAGCGTCGGCAGGTTCATGACGAGGTACAGTTTTCCGGTGGTCCT
GAGAGCATCCGACATGCCGAAGATTAGGTCGGGCATCGCGAAAAACATGG
GCGCGGCGACTTTCGAAGAAGCGTTCCACTTTCTATGCTCTGCCGGAGCG
GGAACCTACTCCCAGTTCGAGATCATCCTGAACTACGTGTGGTACAACAT
GCGTGACGGCTACGCTTGGCACATCGCGGACCCCGCTTCCGGCGCCTTCG
AAGAGATTTCGGGGCACACAAAAGCTCGCGCCACCACGAACGAGGCGGTG
CTGTCAAAAAATGTCCCAACAGTCTTACCGATGAGACACATGGGAAAGGC
GATCGACACCGGGTCGATCGGACCTTCGTCGTTGTTTCGGAACCTCTGCA
ACGGAAGCGGCTATCAGCGCCACCACGAACGAGGCGGTGCTGTCAAAAAA
TGTCCCAACAGTCTTACCGATGAGACACATGGGAAAGGCGATCGACACCG
GGTCGATCGGACCTTCGTCGTTGTTTCGGAACCTCTGCAACGGAAGCGGC
TATCAGGCCGGGTATTGCCAGACACTGGATCCCACGGAGAACGACGGGGT
GCCGATAACGGCAAAGTGGACGGCTGGAGGCGTCACCTGGCTTGACACGT
ACCAAGAGCACCTACGGCAGGTCGGGGCAGCGCTTCCGGCGTTTGATTGG
CACCGTGAGGCTCCCGAAGACTGGGTTATTCCCGGTAGCGATTAGGCCGG
GTATTGCCAGACACTGGATCCCACGGAGAACGACGGGGTGCCGATAACGG
CAAAGTGGACGGCTGGAGGCGTCACCTGGCTTGACACGTACCAAGAGCAC
CTACGGCAGGTCGGGGCAGCGCTTCCGGCGTTTGATTGGCACCGTGAGGC
TCCCGAAGACTGGGTTATTCCCGGTAGCGATTAG
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