mRNA_H-canaliculatus_F_contig15298.3930.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15298.3930.1
Unique NamemRNA_H-canaliculatus_F_contig15298.3930.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15298.3930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15298contigH-canaliculatus_F_contig15298:1460..2215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size756
Cds size420
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929266.903038-UTR-H-canaliculatus_F_contig15298:1459..17951622929266.903038-UTR-H-canaliculatus_F_contig15298:1459..1795Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15298 1460..1795 +
1696845742.6560822-UTR-H-canaliculatus_F_contig15298:1459..17951696845742.6560822-UTR-H-canaliculatus_F_contig15298:1459..1795Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15298 1460..1795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929266.9418619-CDS-H-canaliculatus_F_contig15298:1795..22151622929266.9418619-CDS-H-canaliculatus_F_contig15298:1795..2215Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15298 1796..2215 +
1696845742.6675706-CDS-H-canaliculatus_F_contig15298:1795..22151696845742.6675706-CDS-H-canaliculatus_F_contig15298:1795..2215Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15298 1796..2215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15298.3930.1prot_H-canaliculatus_F_contig15298.3930.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15298 1796..2215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15298.3930.1

>prot_H-canaliculatus_F_contig15298.3930.1 ID=prot_H-canaliculatus_F_contig15298.3930.1|Name=mRNA_H-canaliculatus_F_contig15298.3930.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=140bp
MSDARWTMHALLACSLPQDFTRTHTHTHRPAHTLALVRDRARRTTGKLRT
SSSRPHPSTVTSVLPAHSACFFHPMSPRFFPEMIPRSLAPSCRQDQTKPP
WARSVAVCFDFRASQRPWLIFSERTRFVLIPINRRASRYR
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mRNA from alignment at H-canaliculatus_F_contig15298:1460..2215+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15298.3930.1 ID=mRNA_H-canaliculatus_F_contig15298.3930.1|Name=mRNA_H-canaliculatus_F_contig15298.3930.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=756bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15298:1460..2215+ (Hapterophycus canaliculatus Oshoro5f female)
TTCCAAGAACGCGGTCGTTACGGTAGAGGAGCTCTTGAACGACTGACGGC
ATCCGTGGTGAAGCCGTCGGGCCTGGGTGAAACGTTGTGTTTAGAAGTTA
AAGTTCAGCCGCGCGACAAGATTTTCGTCCTTCGACGAAAAGATACAGTC
GACAGCACCGAAGGAACAGAAGGAAGGAATACCTCCTGAGCCGCGTCTCA
GCAGGCGTCTGAGGAGCCTCGTGTGTTGGATTCTCGTTGAAAGCCCTTTA
AGTTCGACCGCAACCGTTGTTCACTGTTCAGGGCGGTGTTTCCTGCCGTC
CATCCTTCCCCCCCAGTGCCCCCGGGTCACACACAAATGTCCGATGCACG
ATGGACGATGCACGCTCTTCTTGCTTGCTCCCTTCCGCAGGACTTCACCC
GAACACACACACACACACATCGTCCAGCTCACACGCTCGCTCTCGTTCGC
GACAGGGCTCGTCGAACCACGGGCAAACTGCGCACTTCTTCGAGCCGCCC
CCACCCTTCCACCGTAACAAGCGTGCTCCCTGCACACTCTGCCTGCTTTT
TCCACCCGATGTCTCCGCGTTTTTTTCCGGAGATGATCCCACGCAGCCTG
GCTCCCAGCTGCCGACAAGACCAGACGAAGCCGCCTTGGGCTCGTTCGGT
TGCTGTTTGTTTCGATTTTCGGGCTTCACAACGCCCCTGGCTCATTTTTT
CCGAACGTACCCGTTTCGTGTTGATCCCTATCAACCGCCGTGCCTCACGC
TATCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15298:1460..2215+

>mRNA_H-canaliculatus_F_contig15298.3930.1 ID=mRNA_H-canaliculatus_F_contig15298.3930.1|Name=mRNA_H-canaliculatus_F_contig15298.3930.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=840bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15298:1460..2215+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCCGATGCACGATGGACGATGCACGCTCTTCTTGCTTGCTCCCTTCC
GCAGGACTTCACCCGAACACACACACACACACATCGTCCAGCTCACACGC
TCGCTCTCGTTCGCGACAGGGCTCGTCGAACCACGGGCAAACTGCGCACT
TCTTCGAGCCGCCCCCACCCTTCCACCGTAACAAGCGTGCTCCCTGCACA
CTCTGCCTGCTTTTTCCACCCGATGTCTCCGCGTTTTTTTCCGGAGATGA
TCCCACGCAGCCTGGCTCCCAGCTGCCGACAAGACCAGACGAAGCCGCCT
TGGGCTCGTTCGGTTGCTGTTTGTTTCGATTTTCGGGCTTCACAACGCCC
CTGGCTCATTTTTTCCGAACGTACCCGTTTCGTGTTGATCCCTATCAACC
GCCGTGCCTCACGCTATCGCATGTCCGATGCACGATGGACGATGCACGCT
CTTCTTGCTTGCTCCCTTCCGCAGGACTTCACCCGAACACACACACACAC
ACATCGTCCAGCTCACACGCTCGCTCTCGTTCGCGACAGGGCTCGTCGAA
CCACGGGCAAACTGCGCACTTCTTCGAGCCGCCCCCACCCTTCCACCGTA
ACAAGCGTGCTCCCTGCACACTCTGCCTGCTTTTTCCACCCGATGTCTCC
GCGTTTTTTTCCGGAGATGATCCCACGCAGCCTGGCTCCCAGCTGCCGAC
AAGACCAGACGAAGCCGCCTTGGGCTCGTTCGGTTGCTGTTTGTTTCGAT
TTTCGGGCTTCACAACGCCCCTGGCTCATTTTTTCCGAACGTACCCGTTT
CGTGTTGATCCCTATCAACCGCCGTGCCTCACGCTATCGC
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