mRNA_H-canaliculatus_F_contig15297.3929.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15297.3929.1
Unique NamemRNA_H-canaliculatus_F_contig15297.3929.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15297.3929.1 vs. uniprot
Match: D8LF64_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF64_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 1.870e-40
Identity = 66/76 (86.84%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:    1 EQLGGVAGGQKFMWRGILFKLADGSNGPYCGNDEAAAKGAGHDLRGATHYLGTRVRGLHYALQCLIDYKGFRMTAQ 228
            E LGG AGG KF+WRGILFKLADGS GPY GNDEAAAKGAGHDLRGATHYL  R+RGL YALQCLIDYKGFRMTAQ
Sbjct:   71 ENLGGSAGGMKFVWRGILFKLADGSRGPYLGNDEAAAKGAGHDLRGATHYLDARIRGLRYALQCLIDYKGFRMTAQ 146
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BLAST of mRNA_H-canaliculatus_F_contig15297.3929.1 vs. uniprot
Match: D7G5G9_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G9_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 1.050e-38
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 1 
Query:    1 EQLGGVAGGQKFMWRGILFKLADGSNGPYCGNDEAAAKGAGHDLRGATHYLGTRVRGLHYALQCLIDYKGFRMTAQ 228
            ++LGGVAGG KF+WRGILFKLADGS GPY GNDEAAAKGAGHDLRGATHYL TR+RGL YALQCLIDYKGFRMTAQ
Sbjct:  307 KELGGVAGGMKFVWRGILFKLADGSKGPYLGNDEAAAKGAGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQ 382
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BLAST of mRNA_H-canaliculatus_F_contig15297.3929.1 vs. uniprot
Match: A0A6H5KFE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFE7_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 9.260e-34
Identity = 60/66 (90.91%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:   31 KFMWRGILFKLADGSNGPYCGNDEAAAKGAGHDLRGATHYLGTRVRGLHYALQCLIDYKGFRMTAQ 228
            KF+WRGILFKLADGS GPY GNDEAAAKGAGHDLRGATHYL TR+RGL YALQCLIDYKGFRMTAQ
Sbjct:    2 KFVWRGILFKLADGSKGPYLGNDEAAAKGAGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQ 67
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BLAST of mRNA_H-canaliculatus_F_contig15297.3929.1 vs. uniprot
Match: D7G9G7_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G7_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 3.690e-26
Identity = 53/76 (69.74%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:    1 EQLGGVAGGQKFMWRGILFKLADGSNGPYCGNDEAAAKGAGHDLRGATHYLGTRVRGLHYALQCLIDYKGFRMTAQ 228
            ++LGG+AGG+K++WRGILFKLADGS GPY G+DEAAAK AGH+LRGA+ YL T V GL     CL+DYKGFRM AQ
Sbjct:  159 KRLGGLAGGKKYLWRGILFKLADGSQGPYGGSDEAAAKAAGHELRGASEYLHTGV-GLCIPPMCLLDYKGFRMLAQ 233
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BLAST of mRNA_H-canaliculatus_F_contig15297.3929.1 vs. uniprot
Match: A0A835YKN4_9STRA (CLU domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN4_9STRA)

HSP 1 Score: 102 bits (254), Expect = 4.640e-25
Identity = 45/74 (60.81%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:    1 EQLGGVAGGQKFMWRGILFKLADGSNGPYCGNDEAAAKGAGHDLRGATHYLGTRVRGLHYALQCLIDYKGFRMT 222
             ++GG AGG+KF++RGILFKLADG+ GP+ G+DEAAAK AGH+LRG ++Y    V GLH++  C++DYKGFRM 
Sbjct:   91 REVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMV 164
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BLAST of mRNA_H-canaliculatus_F_contig15297.3929.1 vs. uniprot
Match: A0A835ZAL9_9STRA (CLU domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL9_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.250e-23
Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:    7 LGGVAGGQKFMWRGILFKLADGSNGPYCGNDEAAAKGAGHDLRGATHYLGTRVRGLHYALQCLIDYKGFRMTAQ 228
            +GG+AGG+KF+ RGILFKLADGS GPY G+DEAA K   +DL+GA H +   + GL  +LQ LIDYKGFRM AQ
Sbjct:   59 VGGIAGGRKFLLRGILFKLADGSRGPYDGSDEAAGKALNNDLKGAVHLVKCSIPGLFCSLQALIDYKGFRMHAQ 132
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BLAST of mRNA_H-canaliculatus_F_contig15297.3929.1 vs. uniprot
Match: F0YQT9_AURAN (Clu domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQT9_AURAN)

HSP 1 Score: 86.3 bits (212), Expect = 2.680e-18
Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:    1 EQLGGVAGGQKFMWRGILFKLADGSNGPYCGNDEAAAKGAGHDLRGATHYLGTRVRGLHYALQCLIDYKGFRMTAQ 228
              LGG AGG+KF   GI+FK  DG   P+ G+D+AA K  GHDL+GA   L  RV G+H ALQC++DY  +R+ AQ
Sbjct:   82 SDLGGQAGGRKFATHGIIFKCVDGGRAPFYGDDDAAHKCVGHDLKGANAVLAARVPGVHVALQCVVDYLDYRIHAQ 157
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BLAST of mRNA_H-canaliculatus_F_contig15297.3929.1 vs. uniprot
Match: L8HEJ1_ACACA (Protein unc-45 homolog B n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HEJ1_ACACA)

HSP 1 Score: 82.0 bits (201), Expect = 1.720e-16
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:    7 LGGVAGGQKFMWRGILFKLADGSNGPYCGNDEAAAKGAGHDLRGATHYLGTRVRGLHYALQCLIDYKGFRMTA 225
            +GGVAGG+K++ RGILFK A    G Y G DE +AK A H+L+G   Y    VRGLH+ L  LIDY+GFR+TA
Sbjct: 1196 IGGVAGGEKYIHRGILFKFAMDWEGLY-GGDEYSAKVASHELKGLARYFSCAVRGLHFPLMALIDYRGFRLTA 1267
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15297.3929.1 vs. uniprot
Match: UPI000645091F (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000645091F)

HSP 1 Score: 79.3 bits (194), Expect = 1.520e-15
Identity = 41/73 (56.16%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    7 LGGVAGGQKFMWRGILFKLADGSNGPYCGNDEAAAKGAGHDLRGATHYLGTRVRGLHYALQCLIDYKGFRMTA 225
            +GGVAGG K++  GILFKLA  S G Y G D  A K AGH+L+G   Y   RV GLH+ L  LIDY+GFR+ A
Sbjct:  341 IGGVAGGHKYIALGILFKLALDSQGLYVG-DHNAMKAAGHELKGLMSYYNARVEGLHHPLMTLIDYRGFRLVA 412
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15297.3929.1 vs. uniprot
Match: D3B1V9_POLPP (Histidine kinase A n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B1V9_POLPP)

HSP 1 Score: 79.3 bits (194), Expect = 1.520e-15
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    7 LGGVAGGQKFMWRGILFKLADGSNGPYCGNDEAAAKGAGHDLRGATHYLGTRVRGLHYALQCLIDYKGFRMTA 225
            +GGVAGG K++  GILFKLA  S G Y G D+ A K AGH+L+G   Y   RV GLH+ L  LIDY+G+R+ A
Sbjct:  452 IGGVAGGHKYIALGILFKLALDSQGLYVG-DQNAMKAAGHELKGLMSYYNARVEGLHHPLMALIDYRGYRLVA 523
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15297.3929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF64_ECTSI1.870e-4086.84Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G5G9_ECTSI1.050e-3888.16Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KFE7_9PHAE9.260e-3490.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9G7_ECTSI3.690e-2669.74Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YKN4_9STRA4.640e-2560.81CLU domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835ZAL9_9STRA1.250e-2363.51CLU domain-containing protein (Fragment) n=1 Tax=T... [more]
F0YQT9_AURAN2.680e-1852.63Clu domain-containing protein (Fragment) n=1 Tax=A... [more]
L8HEJ1_ACACA1.720e-1656.16Protein unc-45 homolog B n=1 Tax=Acanthamoeba cast... [more]
UPI000645091F1.520e-1556.16hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3B1V9_POLPP1.520e-1554.79Histidine kinase A n=1 Tax=Polysphondylium pallidu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15297contigH-canaliculatus_F_contig15297:535..1758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue9.5e-33
Seed eggNOG ortholog2880.D7G5G9
KEGG koko:K02987
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
EggNOG free text desc.intracellular distribution of mitochondria
EggNOG OGsKOG1839@1,KOG1839@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCLU domain
Ec32 orthologEc-28_000850.1
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929266.832847-CDS-H-canaliculatus_F_contig15297:534..6471622929266.832847-CDS-H-canaliculatus_F_contig15297:534..647Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15297 535..647 -
1696845742.6323938-CDS-H-canaliculatus_F_contig15297:534..6471696845742.6323938-CDS-H-canaliculatus_F_contig15297:534..647Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15297 535..647 -
1622929266.8576527-CDS-H-canaliculatus_F_contig15297:1643..17581622929266.8576527-CDS-H-canaliculatus_F_contig15297:1643..1758Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15297 1644..1758 -
1696845742.6463153-CDS-H-canaliculatus_F_contig15297:1643..17581696845742.6463153-CDS-H-canaliculatus_F_contig15297:1643..1758Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15297 1644..1758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15297.3929.1prot_H-canaliculatus_F_contig15297.3929.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15297 535..1758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15297.3929.1

>prot_H-canaliculatus_F_contig15297.3929.1 ID=prot_H-canaliculatus_F_contig15297.3929.1|Name=mRNA_H-canaliculatus_F_contig15297.3929.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=76bp
EQLGGVAGGQKFMWRGILFKLADGSNGPYCGNDEAAAKGAGHDLRGATHY
LGTRVRGLHYALQCLIDYKGFRMTAQ
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mRNA from alignment at H-canaliculatus_F_contig15297:535..1758-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15297.3929.1 ID=mRNA_H-canaliculatus_F_contig15297.3929.1|Name=mRNA_H-canaliculatus_F_contig15297.3929.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1224bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15297:535..1758- (Hapterophycus canaliculatus Oshoro5f female)
GAGCAGCTCGGCGGCGTCGCCGGAGGCCAGAAGTTCATGTGGCGAGGGAT
CCTCTTCAAGCTCGCCGACGGATCCAACGGGCCTTACTGTGGCAACGACG
AAGCTGCCGCCAAAGGTGCGGTGCGGCCAGGGTTAGAAGTCGGTGGCAAA
ATCAAGGTCGATCTAACTTCGAAGATCGGACCAAAAAAATAGCTGACAAG
CGATGTTTTCCGATCTCCGAAAAGAGGCTCCGTGTGGAAAAAAGGGGGGC
CGCGGACATGAACAATGAAGGAGGTGACCACTTCAGGGGTCACGTGCGTT
AGAATATGGAGAAATTCGCGAATCGGGAGATCGGCCAAATATTTCTGTCG
ATGTCGATCTTCTAGAATCGGCGATTAAGCGGAGATCAGATCGACCGCCC
GATTCCCGATCTCCAACACCGGGAACGGTACGGTGACGGTACGGTGTACA
AGACGGCATGGAAGGGAGGTGGGTCTCGCATGGAAGGGTCTGGCATCAAC
TGGTACGGTGCGGCACGGTGGCGATACGATGAGGGTACGGTACAGAACGG
AAGAAGGCGGTGTGGCATGGTGCGGGACGGTTCCGGCATCGCCTGTGATC
CTACGCCGCCGGACGGTGAAGCACGGTTGCCGCGCCGGCGACAAGATGTA
TGAAAGACGCGGTTGGCTCGTTTCAGGAGGGCGTGTAACAGATACCCCCG
GATATCGCGCAACGACCGTGGAGAGTACGCATGAGTCCGACCCAACATGG
CACGCACTGCCGCAGATTCCGGCCCGGTGTAGTCTGTCGAATCGCACGTA
CCGGCGGAGGATTGAGCAAGACCCAAACTAAATACTCGGTACGATACGCC
CCGCCGATGTGCGCGGACGTTCTTCCTTTACTGGGGACGATTGTCCCTCA
TCTGCCGCCGTTCCGCTCCGCGTGCCCCGCACCCCCTCCCACCTCGCGAT
TGCTGCTCTCTTGTCTTCTGCCGTACCATCGGCTCCGACCCTGGCATCTT
CTGCGCCGCATCGGTGTCTTCTGCTCCGTGCTTCTTGTTAATGTTTCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACGTTGTGGCGTCATC
TTGTTGCGCAGGCGCTGGGCACGACTTGAGGGGGGCGACGCACTACCTCG
GGACGAGAGTGCGTGGGCTGCATTACGCGCTCCAGTGCTTGATAGACTAC
AAGGGCTTCCGCATGACGGCACAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15297:535..1758-

>mRNA_H-canaliculatus_F_contig15297.3929.1 ID=mRNA_H-canaliculatus_F_contig15297.3929.1|Name=mRNA_H-canaliculatus_F_contig15297.3929.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=456bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15297:535..1758- (Hapterophycus canaliculatus Oshoro5f female)
GAGCAGCTCGGCGGCGTCGCCGGAGGCCAGAAGTTCATGTGGCGAGGGAT
CCTCTTCAAGCTCGCCGACGGATCCAACGGGCCTTACTGTGGCAACGACG
AAGCTGCCGCCAAAGGAGCAGCTCGGCGGCGTCGCCGGAGGCCAGAAGTT
CATGTGGCGAGGGATCCTCTTCAAGCTCGCCGACGGATCCAACGGGCCTT
ACTGTGGCAACGACGAAGCTGCCGCCAAAGGCGCTGGGCACGACTTGAGG
GGGGCGACGCACTACCTCGGGACGAGAGTGCGTGGGCTGCATTACGCGCT
CCAGTGCTTGATAGACTACAAGGGCTTCCGCATGACGGCACAGGCGCTGG
GCACGACTTGAGGGGGGCGACGCACTACCTCGGGACGAGAGTGCGTGGGC
TGCATTACGCGCTCCAGTGCTTGATAGACTACAAGGGCTTCCGCATGACG
GCACAG
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