mRNA_H-canaliculatus_F_contig15290.3928.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15290.3928.1
Unique NamemRNA_H-canaliculatus_F_contig15290.3928.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15290.3928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15290contigH-canaliculatus_F_contig15290:581..2179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size210
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15290.3928.1prot_H-canaliculatus_F_contig15290.3928.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15290 610..2179 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929266.6613503-UTR-H-canaliculatus_F_contig15290:580..6091622929266.6613503-UTR-H-canaliculatus_F_contig15290:580..609Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15290 581..609 +
1696845742.5735877-UTR-H-canaliculatus_F_contig15290:580..6091696845742.5735877-UTR-H-canaliculatus_F_contig15290:580..609Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15290 581..609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929266.679621-CDS-H-canaliculatus_F_contig15290:609..6511622929266.679621-CDS-H-canaliculatus_F_contig15290:609..651Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15290 610..651 +
1696845742.5847697-CDS-H-canaliculatus_F_contig15290:609..6511696845742.5847697-CDS-H-canaliculatus_F_contig15290:609..651Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15290 610..651 +
1622929266.7042928-CDS-H-canaliculatus_F_contig15290:2011..21791622929266.7042928-CDS-H-canaliculatus_F_contig15290:2011..2179Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15290 2012..2179 +
1696845742.593442-CDS-H-canaliculatus_F_contig15290:2011..21791696845742.593442-CDS-H-canaliculatus_F_contig15290:2011..2179Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15290 2012..2179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15290.3928.1

>prot_H-canaliculatus_F_contig15290.3928.1 ID=prot_H-canaliculatus_F_contig15290.3928.1|Name=mRNA_H-canaliculatus_F_contig15290.3928.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=70bp
MLDGMSKIMSPAVRVFVFADACDFPRRGVPFKGHIVVGTGRKISKLVDQR
KLPLGRCGLLIAERVDKTFA
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mRNA from alignment at H-canaliculatus_F_contig15290:581..2179+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15290.3928.1 ID=mRNA_H-canaliculatus_F_contig15290.3928.1|Name=mRNA_H-canaliculatus_F_contig15290.3928.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1599bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15290:581..2179+ (Hapterophycus canaliculatus Oshoro5f female)
AGAGAGCTAGGGCCTGCAAGCTCAAGGGAATGCTGGATGGCATGTCGAAG
ATCATGTCGCCAGCCGTCAGAGTGGGTTGTCTGTCTGGAGTCTCTGCCTG
ACATGTTTCGTGTGCGGGCTACGTCGCGGCCCTGCACTTTGTTTTTCCTT
TTCTCTTCCCATGAATCAAAAGGTACAAGGACGTGTTCTAACGTAAAATG
CAGCCGGTTGTCCCCTTTTCGGCTGCTTGGGTTATTTTTCAGGAATGGTT
CCGCCCTCAAACACCACCTCCATATACCTTTATTTGTCTGAAAGGTTTCG
ATTGGAGTTGAGCCGAACGTCCACTGTACGCCACAATTAGTTATGGTTAC
CTGGAGTCGCTTTCTGTCACGAATATCCATGGCGGATATCTTTGCCGATC
CTGTTGTGCCTTTAATGGTAGTTCCATTGGGCCGAGGCAATCCACGCATC
ATGTCAGGCCAGGCGATACACATGTCTCGATGGCGCCTGCGTTGCGAGCT
TGATAGTTATCCGTGCCACCGTCAAGGACAGGAAGTATTTCTCGTGCCTC
GTCGCCAGCATACGTGTCAAACGGTGTAAACCCGACCCCAACAGCTCACG
CCTCGAGCGTTTTGCATTCGACAGCACAAAAAAAAAGGGTGTGCGTAGTT
TACATAGAAGAGAGCGAACTTACGACAGAGTCGGCCCCAACTCTGTGAGG
ACACCGCAGGTCCACGCTGGCTCCCGCATGGCCCCCTTCCACCCAGCCGA
GGGGGCACGCAGTGCGCAGTCAGCTCTGGCAAGGCCACAGTCCTGTGAAC
CTCCGTTGATGTTGATCCACGCGAGAGAGGTCCCGTAGTGTATCATGCTT
GCCCGGTGGCGTTGTTGCTCTCGTAGAAGTGTTAACGAGGCCCCCGTCAC
CGGGAGGAATGACCGTCACCGTGTCTCCTCGGAAAACAAACGCACGAACG
CGTGGTGCGCTGCTGGCCGAAAAGAGCACCTCCTCAAAGGGAGGAGGAGG
CATAGGTAAAAGACCGGTTACGTACTTGTACGGACGTTCGGTTGTTGTCT
AGCTTCTATCAACTGCTTTCTGATCATCGTATTTTGCCCTGCTCAACTCT
GGCGTATGAAATCGACGTCTTAAGGCCACCTTCACGAGAGAACCTAGAAG
CAGTGCCCCCGACTCGAGCTCTCACGAAACAAGGCTCAGAAAGCCTCCTT
ACTTGGTGAAACCCCACCCGCACCCCACCTGCCTGCCTTCCTTCGTAACC
TGTGAGATCGCGTCGTGACCTGTCCTGTTGTCTTGCTTTCCTTGGTGAGG
GCGTTGCGGAAAAGCCTATCTTACGCCGGCGACTGCTTGCCCTGTGGGTT
CTTCCTGTGAGAGCTTGCAGTGACTAGTTACATCGACGCCGACAATACGG
GCGCTTTGTCTTGTGGCTCCCGCGCCGGCAGGTCTTCGTCTTCGCAGACG
CATGCGACTTCCCACGCCGAGGCGTGCCCTTCAAGGGCCACATCGTGGTC
GGGACGGGGAGGAAGATTTCGAAGCTTGTAGACCAAAGGAAGCTGCCGCT
GGGGAGGTGTGGGCTGTTGATCGCCGAAAGGGTGGACAAGACGTTTGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15290:581..2179+

>mRNA_H-canaliculatus_F_contig15290.3928.1 ID=mRNA_H-canaliculatus_F_contig15290.3928.1|Name=mRNA_H-canaliculatus_F_contig15290.3928.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=420bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15290:581..2179+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGGATGGCATGTCGAAGATCATGTCGCCAGCCGTCAGAATGCTGGA
TGGCATGTCGAAGATCATGTCGCCAGCCGTCAGAGTCTTCGTCTTCGCAG
ACGCATGCGACTTCCCACGCCGAGGCGTGCCCTTCAAGGGCCACATCGTG
GTCGGGACGGGGAGGAAGATTTCGAAGCTTGTAGACCAAAGGAAGCTGCC
GCTGGGGAGGTGTGGGCTGTTGATCGCCGAAAGGGTGGACAAGACGTTTG
CCGTCTTCGTCTTCGCAGACGCATGCGACTTCCCACGCCGAGGCGTGCCC
TTCAAGGGCCACATCGTGGTCGGGACGGGGAGGAAGATTTCGAAGCTTGT
AGACCAAAGGAAGCTGCCGCTGGGGAGGTGTGGGCTGTTGATCGCCGAAA
GGGTGGACAAGACGTTTGCC
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