mRNA_H-canaliculatus_F_contig1529.3926.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1529.3926.1
Unique NamemRNA_H-canaliculatus_F_contig1529.3926.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1529.3926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1529contigH-canaliculatus_F_contig1529:25148..25899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size752
Cds size645
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929265.2554827-CDS-H-canaliculatus_F_contig1529:25147..257921622929265.2554827-CDS-H-canaliculatus_F_contig1529:25147..25792Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1529 25148..25792 +
1696845742.291335-CDS-H-canaliculatus_F_contig1529:25147..257921696845742.291335-CDS-H-canaliculatus_F_contig1529:25147..25792Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1529 25148..25792 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929265.266347-UTR-H-canaliculatus_F_contig1529:25792..258991622929265.266347-UTR-H-canaliculatus_F_contig1529:25792..25899Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1529 25793..25899 +
1696845742.3017662-UTR-H-canaliculatus_F_contig1529:25792..258991696845742.3017662-UTR-H-canaliculatus_F_contig1529:25792..25899Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1529 25793..25899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1529.3926.1prot_H-canaliculatus_F_contig1529.3926.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1529 25148..25792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1529.3926.1

>prot_H-canaliculatus_F_contig1529.3926.1 ID=prot_H-canaliculatus_F_contig1529.3926.1|Name=mRNA_H-canaliculatus_F_contig1529.3926.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=215bp
AGPTSRLPPATEVLKRPAFSTEGGARRICLGASFRTAAPATAGARKASCW
TECCQRRPALPGFGLLLVLIPAGEVVSGCGAGAGSALGAVTIFGGGDSGG
CGCRRPGPSGGVVSPVRALGSATLQTSAAVAAVVAASPHGRWAEVAASTE
RRLTRGTALMAPRLKLVAAAATAGPAPAPAVVVPAIVQGPQPVESETNAM
FVRRDRTFTGLFTV*
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mRNA from alignment at H-canaliculatus_F_contig1529:25148..25899+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1529.3926.1 ID=mRNA_H-canaliculatus_F_contig1529.3926.1|Name=mRNA_H-canaliculatus_F_contig1529.3926.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=752bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1529:25148..25899+ (Hapterophycus canaliculatus Oshoro5f female)
GCCGGCCCCACGTCACGTCTCCCCCCCGCTACTGAAGTCTTGAAACGCCC
GGCTTTTTCCACCGAGGGAGGTGCTCGCCGAATTTGCCTCGGCGCCTCGT
TTCGTACGGCGGCTCCGGCGACCGCGGGTGCTAGGAAAGCTTCCTGCTGG
ACCGAATGCTGCCAACGCCGTCCCGCCTTACCCGGCTTTGGACTGCTGCT
TGTTCTGATCCCTGCAGGCGAGGTGGTGTCCGGGTGCGGTGCCGGTGCCG
GTTCTGCTCTCGGCGCTGTCACTATTTTTGGCGGAGGAGACAGCGGCGGG
TGCGGCTGTCGCCGGCCTGGTCCAAGTGGAGGCGTTGTGTCTCCTGTCAG
GGCTCTTGGCTCTGCCACATTACAAACATCCGCCGCCGTCGCTGCTGTTG
TCGCTGCCAGCCCACACGGGCGCTGGGCTGAGGTGGCCGCGAGCACGGAG
CGACGCCTGACGCGAGGGACGGCTCTGATGGCGCCGCGATTGAAGCTGGT
TGCCGCTGCCGCCACCGCCGGCCCCGCCCCCGCCCCCGCCGTCGTCGTGC
CAGCAATCGTCCAAGGGCCGCAGCCGGTCGAAAGCGAAACGAACGCCATG
TTCGTGAGACGAGATCGCACCTTCACAGGTTTATTTACTGTTTGATATAG
TTCTGGAGCAGCAGTGTCACTGTCTCTTTCAATGGAGCCTTGGCCTGACC
AACCGAATCGGCCTGACTAACCGAAAGGGCGTGGTGGAATTGTAGCAACC
TG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1529:25148..25899+

>mRNA_H-canaliculatus_F_contig1529.3926.1 ID=mRNA_H-canaliculatus_F_contig1529.3926.1|Name=mRNA_H-canaliculatus_F_contig1529.3926.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1290bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1529:25148..25899+ (Hapterophycus canaliculatus Oshoro5f female)
GCCGGCCCCACGTCACGTCTCCCCCCCGCTACTGAAGTCTTGAAACGCCC
GGCTTTTTCCACCGAGGGAGGTGCTCGCCGAATTTGCCTCGGCGCCTCGT
TTCGTACGGCGGCTCCGGCGACCGCGGGTGCTAGGAAAGCTTCCTGCTGG
ACCGAATGCTGCCAACGCCGTCCCGCCTTACCCGGCTTTGGACTGCTGCT
TGTTCTGATCCCTGCAGGCGAGGTGGTGTCCGGGTGCGGTGCCGGTGCCG
GTTCTGCTCTCGGCGCTGTCACTATTTTTGGCGGAGGAGACAGCGGCGGG
TGCGGCTGTCGCCGGCCTGGTCCAAGTGGAGGCGTTGTGTCTCCTGTCAG
GGCTCTTGGCTCTGCCACATTACAAACATCCGCCGCCGTCGCTGCTGTTG
TCGCTGCCAGCCCACACGGGCGCTGGGCTGAGGTGGCCGCGAGCACGGAG
CGACGCCTGACGCGAGGGACGGCTCTGATGGCGCCGCGATTGAAGCTGGT
TGCCGCTGCCGCCACCGCCGGCCCCGCCCCCGCCCCCGCCGTCGTCGTGC
CAGCAATCGTCCAAGGGCCGCAGCCGGTCGAAAGCGAAACGAACGCCATG
TTCGTGAGACGAGATCGCACCTTCACAGGTTTATTTACTGTTTGAGCCGG
CCCCACGTCACGTCTCCCCCCCGCTACTGAAGTCTTGAAACGCCCGGCTT
TTTCCACCGAGGGAGGTGCTCGCCGAATTTGCCTCGGCGCCTCGTTTCGT
ACGGCGGCTCCGGCGACCGCGGGTGCTAGGAAAGCTTCCTGCTGGACCGA
ATGCTGCCAACGCCGTCCCGCCTTACCCGGCTTTGGACTGCTGCTTGTTC
TGATCCCTGCAGGCGAGGTGGTGTCCGGGTGCGGTGCCGGTGCCGGTTCT
GCTCTCGGCGCTGTCACTATTTTTGGCGGAGGAGACAGCGGCGGGTGCGG
CTGTCGCCGGCCTGGTCCAAGTGGAGGCGTTGTGTCTCCTGTCAGGGCTC
TTGGCTCTGCCACATTACAAACATCCGCCGCCGTCGCTGCTGTTGTCGCT
GCCAGCCCACACGGGCGCTGGGCTGAGGTGGCCGCGAGCACGGAGCGACG
CCTGACGCGAGGGACGGCTCTGATGGCGCCGCGATTGAAGCTGGTTGCCG
CTGCCGCCACCGCCGGCCCCGCCCCCGCCCCCGCCGTCGTCGTGCCAGCA
ATCGTCCAAGGGCCGCAGCCGGTCGAAAGCGAAACGAACGCCATGTTCGT
GAGACGAGATCGCACCTTCACAGGTTTATTTACTGTTTGA
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