mRNA_H-canaliculatus_F_contig1529.3925.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1529.3925.1 vs. uniprot
Match: D7G0M5_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M5_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 9.140e-9 Identity = 53/169 (31.36%), Postives = 76/169 (44.97%), Query Frame = 2
Query: 374 AITGAAPAFGTAVTLPMYSTCIQFMARAQRSREAVLILDRIRKAGLEPDLRCLNFAISACGRSGRWEQALRILRGTEDGGSGENXXXXXXXXXXXGAGKTAADLDVYCWSSAVDACGRAGKWREAVGLVEEMQTEKVGIAPNVITYNAAITACRKGRQCERAVALLRDM 880
A T A A AV+ +YS CI MA+ R EA+ IL R+ + G P+ C+N A+ ACG++GR ++AL ++R G +LDV + EM+ E GI PN ITY AAI C + + + A +LL +M
Sbjct: 110 ATTNNAKAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDACGKAGRVQEALGLMRDARASG---------------------IELDVVSXXXXXXXXXXXXXXXXXXXXIREMEAE-YGIKPNHITYQAAIKVCGRCGKADEAASLLIEM 256
BLAST of mRNA_H-canaliculatus_F_contig1529.3925.1 vs. uniprot
Match: A0A6H5KUL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUL4_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 2.030e-7 Identity = 47/136 (34.56%), Postives = 67/136 (49.26%), Query Frame = 2
Query: 503 AGLEPDLRCLNFAISACGRSGRWEQALRILRGT-EDGGSGENXXXXXXXXXXXGAGKTAADLDVYCWSSAVDACGRAGK---------WREAVGLVEEMQTEKVGIAPNVITYNAAITACRKGRQCERAVALLRDM 880
A + PD+ + AI+ACG G W +AL +LR E G N G+T + + + + GRA + W +GL+EEM+ E G+AP+V T+ AITAC K Q ERA+ LL +M
Sbjct: 339 AAVRPDVFSYSAAITACGNCGEWRRALALLRVMREQGVVSYNAAAHACVGDQRKIGETRINGN----NGVAEQRGRAAEEXXXXXEEGWAIVLGLMEEMRAE--GVAPDVFTFTTAITACGKAGQWERALDLLEEM 468
BLAST of mRNA_H-canaliculatus_F_contig1529.3925.1 vs. uniprot
Match: A0A812P982_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812P982_9DINO) HSP 1 Score: 65.5 bits (158), Expect = 2.840e-7 Identity = 40/155 (25.81%), Postives = 70/155 (45.16%), Query Frame = 2
Query: 425 YSTCIQFMARAQRSREAVLILDRIRKAGLEPDLRCLNFAISACGRSGRWEQALRILRGTEDGGSGENXXXXXXXXXXXGAGKTAADLDVYCWSSAVDACGRAGKWREAVGLVEEMQTEKVGIAPNVITYNAAITACRKGRQCERAVALLRDMPAR 889
Y+TC+ R++ ++ A+L+ + + + + P AI AC W+ L +L A + + +SA+ ACG+AG+WR A+ ++E++ K + NA ITAC K R+ A++LL M +R
Sbjct: 78 YTTCLVACTRSKEAQRALLLFEDMPRLAVRPSEVTFGAAIQACATCAMWQTGLELLG--------------------------AVPQNSFAATSAISACGQAGRWRLAIAILEDLGELK---GTGRVAVNACITACAKSREWAPALSLLVRMASR 203
BLAST of mRNA_H-canaliculatus_F_contig1529.3925.1 vs. uniprot
Match: D8LMP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP8_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 7.350e-7 Identity = 45/143 (31.47%), Postives = 66/143 (46.15%), Query Frame = 2
Query: 503 AGLEPDLRCLNFAISACGRSGRWEQALRILRGTEDGGSGENXXXXXXXXXXX-GAGKTAADLDVYCWSSAVDACGRAGK------------WREAVGLVEEMQTEKVGIAPNVITYNAAITACRKGRQCERAVALLRDMPARG 892
A + PD+ + AI+ACG G W +AL +LR + G N G + + + + + G A + W +GL+EEM+ E G+AP+V T+ AITAC K Q ERA+ LL +M G
Sbjct: 82 AAVRPDVFSYSAAITACGNCGEWRRALALLRVMREQGVPPNVVSYNAAAHACVGDQRKLGETRINGNNGVAEPRGHAAEEEKXXXXXXXEGWALVLGLMEEMRAE--GVAPDVFTFTTAITACGKAGQWERALDLLEEMGGGG 222
BLAST of mRNA_H-canaliculatus_F_contig1529.3925.1 vs. uniprot
Match: A0A813KN20_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KN20_POLGL) HSP 1 Score: 57.8 bits (138), Expect = 1.090e-5 Identity = 40/133 (30.08%), Postives = 57/133 (42.86%), Query Frame = 2
Query: 512 EPDLRCLNFAISACGRSGRWEQALRILRGTEDGGSGENXXXXXXXXXXXGAGKTAADLDVYCWSSAVDACG-RAGKWREAVGLVEEMQT---------EKVGIAPNVITYNAAITACRKGRQCERAVALLRDM 880
+PDL A+SAC + G W A+ +LR + D ++ + A R G W A+ L+ EM+ + + PNVITYNAAI+ C KGRQ + A LLR +
Sbjct: 47 KPDLFLFGAAVSACEKGGHWAGAVALLRELRE---------------------ARLSPDRVVLNAVISAFAQREGGWVWALQLLAEMRKGAPASAAADRRASVEPNVITYNAAISCCEKGRQWQMAFVLLRQL 158
BLAST of mRNA_H-canaliculatus_F_contig1529.3925.1 vs. uniprot
Match: D7FTF0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF0_ECTSI) HSP 1 Score: 60.1 bits (144), Expect = 1.360e-5 Identity = 40/128 (31.25%), Postives = 63/128 (49.22%), Query Frame = 2
Query: 422 MYSTCIQFMARAQRSREAVLILDRIRKAGLEPDLRCLNFAISACGRSGRWEQALRILRGTEDGGSGENXXXXXXXXXXXGAGKTAADLDVYCWSSAVDACGRAGKWREAVGLVEEMQTEKVGIAPNVI 805
+++ I+ ++R + + +R G P++ N AIS CGR G WE A+ +LR + S G+ +DV +S+AV AC G+WR+A+ L+EEMQ GI P+ I
Sbjct: 69 VHTAAIRAALDGGKARPVLATIAAMRADGFVPNISLYNKAISLCGRQGAWEDAVFLLRDAQRVSS---------------PGQRRG-VDVVTFSAAVAACRDGGEWRQALALMEEMQA--AGIKPDQI 178
BLAST of mRNA_H-canaliculatus_F_contig1529.3925.1 vs. uniprot
Match: A0A6H5J994_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J994_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 6.300e-5 Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 2
Query: 692 YCWSSAVDACGRAGKWREAVGLVEEMQT-----EKVGIAPNVITYNAAITACRKGRQCERAVALLRDMPARG 892
YC A+ CGR G W +A+ L+ + Q + G+ +V+TY+AA+ ACR G Q +A+AL+ +M A G
Sbjct: 5 YCLFQAISLCGRQGGWEDAIFLLRDAQRLSSPGQLRGV--DVVTYSAAVAACRDGGQWRQALALMEEMQAAG 74 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1529.3925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1529.3925.1 >prot_H-canaliculatus_F_contig1529.3925.1 ID=prot_H-canaliculatus_F_contig1529.3925.1|Name=mRNA_H-canaliculatus_F_contig1529.3925.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=459bp MYSTCIQFMARAQRSREAVLILDRIRKAGLEPDLRCLNFAISACGRSGRWback to top mRNA from alignment at H-canaliculatus_F_contig1529:22279..25090- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1529.3925.1 ID=mRNA_H-canaliculatus_F_contig1529.3925.1|Name=mRNA_H-canaliculatus_F_contig1529.3925.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2812bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1529:22279..25090- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1529:22279..25090- >mRNA_H-canaliculatus_F_contig1529.3925.1 ID=mRNA_H-canaliculatus_F_contig1529.3925.1|Name=mRNA_H-canaliculatus_F_contig1529.3925.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2754bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1529:22279..25090- (Hapterophycus canaliculatus Oshoro5f female)back to top |