mRNA_H-canaliculatus_F_contig1529.3923.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1529.3923.1
Unique NamemRNA_H-canaliculatus_F_contig1529.3923.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1529.3923.1 vs. uniprot
Match: A0A6H5K899_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K899_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 4.880e-45
Identity = 63/97 (64.95%), Postives = 80/97 (82.47%), Query Frame = 1 
Query:    4 IGAWNTLEVPLEYEPTTMSMTLVGSDAWCIEQLIWDDGRDMLGSGGKIYLDGNLGETGCKYGVHTTAGWFYPCQSSWRFFNLPGSDGYKYEVRVKPC 294
            IG W   E+PL +EPT MSM++VG DAWC +++IW+ G ++LGSGG++YLDG+LG+ GC YGVH   GWFYPCQSSWRFFNL GSD Y+YE++VKPC
Sbjct:  181 IGTWTPFEIPLAFEPTAMSMSMVGIDAWCFDEVIWNGGTNLLGSGGRVYLDGDLGKKGCNYGVHFDTGWFYPCQSSWRFFNLQGSDDYEYEIKVKPC 277
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BLAST of mRNA_H-canaliculatus_F_contig1529.3923.1 vs. uniprot
Match: D7G1J9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J9_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 4.860e-43
Identity = 67/110 (60.91%), Postives = 84/110 (76.36%), Query Frame = 1 
Query:    4 IGAWNTLEVPLEYEPTTMSMTLVGSDAWCIEQLIWDDGRDMLGSGGKIYLDGNLGETGCKYGVHTTAGWFYPCQSSWRFFNLPGSDGYKYEVRVKPCRETVTTSDSTQTS 333
            IG   T E+PL YEPT MS+++VG DAWC ++ IW+ G ++LGSG ++YLDG+LGE GC YGVH   GWFYPCQS WRFFNLPGSD Y+YE++VKPC ++ T S S   S
Sbjct:   97 IGTRATFEIPLAYEPTAMSISIVGIDAWCFDEAIWNGGTNLLGSGARVYLDGDLGEKGCNYGVHFDTGWFYPCQSRWRFFNLPGSDDYEYEIKVKPC-DSATPSGSASLS 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1529.3923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K899_9PHAE4.880e-4564.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1J9_ECTSI4.860e-4360.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1529contigH-canaliculatus_F_contig1529:324..2986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size348
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1529.3923.1prot_H-canaliculatus_F_contig1529.3923.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1529 324..2985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929265.3027604-CDS-H-canaliculatus_F_contig1529:323..4091622929265.3027604-CDS-H-canaliculatus_F_contig1529:323..409Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1529 324..409 +
1696845742.3108714-CDS-H-canaliculatus_F_contig1529:323..4091696845742.3108714-CDS-H-canaliculatus_F_contig1529:323..409Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1529 324..409 +
1622929265.3150299-CDS-H-canaliculatus_F_contig1529:1476..15991622929265.3150299-CDS-H-canaliculatus_F_contig1529:1476..1599Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1529 1477..1599 +
1696845742.3214664-CDS-H-canaliculatus_F_contig1529:1476..15991696845742.3214664-CDS-H-canaliculatus_F_contig1529:1476..1599Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1529 1477..1599 +
1622929265.3286424-CDS-H-canaliculatus_F_contig1529:2382..24321622929265.3286424-CDS-H-canaliculatus_F_contig1529:2382..2432Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1529 2383..2432 +
1696845742.3303804-CDS-H-canaliculatus_F_contig1529:2382..24321696845742.3303804-CDS-H-canaliculatus_F_contig1529:2382..2432Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1529 2383..2432 +
1622929265.3382275-CDS-H-canaliculatus_F_contig1529:2899..29851622929265.3382275-CDS-H-canaliculatus_F_contig1529:2899..2985Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1529 2900..2985 +
1696845742.3413572-CDS-H-canaliculatus_F_contig1529:2899..29851696845742.3413572-CDS-H-canaliculatus_F_contig1529:2899..2985Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1529 2900..2985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1529.3923.1

>prot_H-canaliculatus_F_contig1529.3923.1 ID=prot_H-canaliculatus_F_contig1529.3923.1|Name=mRNA_H-canaliculatus_F_contig1529.3923.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=115bp
VIGAWNTLEVPLEYEPTTMSMTLVGSDAWCIEQLIWDDGRDMLGSGGKIY
LDGNLGETGCKYGVHTTAGWFYPCQSSWRFFNLPGSDGYKYEVRVKPCRE
TVTTSDSTQTSWPRI
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mRNA from alignment at H-canaliculatus_F_contig1529:324..2986+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1529.3923.1 ID=mRNA_H-canaliculatus_F_contig1529.3923.1|Name=mRNA_H-canaliculatus_F_contig1529.3923.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2663bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1529:324..2986+ (Hapterophycus canaliculatus Oshoro5f female)
GTGATAGGAGCGTGGAATACCCTGGAGGTTCCGCTGGAGTACGAGCCCAC
CACCATGTCGATGACCCTTGTGGGGAGCGACGCTTGGTGAGGTGCTGGAT
TATGAAATTGCAGTCGAGAGAGTGACAGGGGTGTAAATGCTCTGATCCAT
GAAGCCCAGAATGAGGCAAGGCTTTCCTTGTCTTTTCGGCCCCCGCAAGC
CAGAGACGCATGGCCTCGCGCTCTACAGCAGAAAGGTGTTCCATCAACCA
TCAACTATCTAACCCGCTCCGGTTCCTCCTTTCAGTTGGAGGCGTGACGA
AAGCGGGACGAGGGGGACGGAGGGATCCTATCCCTCCCACCTTCTGCGGA
GACGACCGCCTTGGTGTTCCCCTTGCTTTCGTGGTTGAGACTTTGGGTCT
AACACTCGTTGACTCGGATGGGATCCCGCTGACATGCGCACCGATGTTTC
TGCGGACGGTCCCCGTCGGATGTGAGATGTCTACGGGCCAAGTGCTGATT
CGATGCATAGGAAATCGTGGAAACCTTTACCGCTTCGGATCTGAAGTTTT
CTTCGGTACTGTAGTTCTTGAGGGGTCAATACCAGCCCAGTTTCATGGCC
TTCATGCCCACGTCGTCGAGATGCAGTGGTGGCAGGGCACGATTTATGTT
AGGCATTTCTTGTCGTTTTTGGCGTATTGCTCTCCGGCGCGATTTATTGC
GGAGGACGTGGGGCGGGCGGGGGTTCCGAGGTTTTCGCTCTCTAATTTAT
TTGAGCTATCGCTGATCTTCAACGGCACCGGTGATGCTTCCACCAGTGGT
AACTCGTACAAGGGCACCATCATATATCACGTTGAGGAACGCCTGTAGCG
AGAATCGGCTTGACCGCGGAATCGATGCTTCCAGAAACGTTCGCCAGGGC
TGTGGTTCTCGCAGTCGAACTAAATCAAGCGTGATACCGCAACCCCGGCT
TTCGGGCCTTTCCTCAACTGCCCTCCCTCCACTGCCTTCCCTTGGATCAA
CGTAGCGGATGTAACAGAGAAGTAGCACGCCTCGTTGTATTCCGGATGTT
GTGCAGATGGCCATGGAACACCAGAGAATCGAAAGCGTGACACTTGTATC
GCCGCACACCACAGCGGGGCGTTGCAAAGATCCGTGCCATGCCGTTTCTG
CAGGTGCATCGAGCAACTTATCTGGGATGACGGGAGAGACATGCTCGGGA
GCGGCGGGAAGATATATCTCGACGGTAACTTGGGAGAGACGGGCTGCAAG
TACGGCGTGCACACCACGGCGGGTTGGTGAGCGTCGACGGGGTGGGAGAC
GTAGCAACAAGGCTCGCCTTGACCACCTTGATTCGTGTTGACAACAACCG
CGTGCGTCTCCGAAGAAGCTGATGCCCGTGACCTTCCCCCCGGTCAGAAG
GTAGCGTCCGCGATCGTACGCTAGACAACCGTGGGGCTTGGGTGTTGGGA
TCAGACCTGCCAGATCACCCAAACGGAGGTGCCGGCGTCGGACCTGATGC
ACCCTGTTGCCTCTCGCTCGCAGACAGGCAAGCGAGTTGAGAAACGCGAC
CGCGCTTCGCGAGCAATACAGCTCAACCCATCGCGATGAGGGTTCCCCCG
TCTACCGAAGACTCAAAGGCTGGCACATATGGCCCCCTCTACGGCATCAT
GCCCTGTTGTACTCGAGGAAAGGGCACTGGAAATGCCCTCGATCGTAGCC
TACCGTCAGAATCGGGGTCTTGGCCCGCGTGCGGTAGATTATTCTGACCC
CTTATCTCGATTAACTGGGAGCTTATGGGCAATCCATTTACGGAAAGCCC
TGGACAGGAATTTCGCAACTGGACCCTCTCCGACGTCGAAACCTGCCGCG
TTGTCGAGATATCGGGCCGGGTAAAACCGCCGCATCCCTGTGTCAAGACC
CCGATTCTTGCCGTAGATGGTGCTCGCCGTGTTGGAAGGGATCAATTTTG
CGATTGCAGCGGCGGGTCCGATCCCGTCAACCCAGGTGCAGGATGCGTGG
TCTCCGAATGTTGTTCGCAACAAGTGCCTACTTCGCCTCCGTTTCGATCC
GACGTACAGGTTCTATCCTTGCCAGAGCAGTTGGCGGTTCTTCAACCTGC
CAGGTTCTGGTGAGATGCCGACGAGTTTGTTCGTCAAGGGCGGGTGAATG
AGAGACAGGGGTGCGTGGAGTATGGGAGGACGACGGAGGATGCGGGGGCG
TAGGGCACCGAGAACGTTGCGAGCAGACAGAGAAGGAGGAGGTGGAAGGG
CGACAAGGAGCGAGGAGGGAATCCTTGTTGTATCCGTCGCACTTGCGTTA
GTTCACAGCGACGCAGCTTGGGTGTCTACGTGGACAATTGCTTCTTTCAA
GCCGTCTAGGCGCTCGCCTTGTCTCAGCCGAAACCGAACAACGATGGGAG
GGTGCCCCTTGAAAGGGAAGTTGTGTGTGATGTTGCGCCGTGCTCGCCCT
AGGTGAGACTGTAATATCAGTGCCAAAAATGCACGGTACCCTCAAATGTG
CAGACCCCCCACAAGGTCAAATGCAGGCTCCAGAAAGGTATTTCGACTCC
CGCTCGTTAACCCGACACTCTTGCAGACGGATACAAGTACGAGGTACGGG
TAAAGCCATGCCGCGAGACCGTCACCACCAGCGACTCGACGCAGACATCG
TGGCCAAGAATTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1529:324..2986+

>mRNA_H-canaliculatus_F_contig1529.3923.1 ID=mRNA_H-canaliculatus_F_contig1529.3923.1|Name=mRNA_H-canaliculatus_F_contig1529.3923.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=690bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1529:324..2986+ (Hapterophycus canaliculatus Oshoro5f female)
GTGATAGGAGCGTGGAATACCCTGGAGGTTCCGCTGGAGTACGAGCCCAC
CACCATGTCGATGACCCTTGTGGGGAGCGACGCTTGGTGATAGGAGCGTG
GAATACCCTGGAGGTTCCGCTGGAGTACGAGCCCACCACCATGTCGATGA
CCCTTGTGGGGAGCGACGCTTGGTGCATCGAGCAACTTATCTGGGATGAC
GGGAGAGACATGCTCGGGAGCGGCGGGAAGATATATCTCGACGGTAACTT
GGGAGAGACGGGCTGCAAGTACGGCGTGCACACCACGGCGGGTTGGTGCA
TCGAGCAACTTATCTGGGATGACGGGAGAGACATGCTCGGGAGCGGCGGG
AAGATATATCTCGACGGTAACTTGGGAGAGACGGGCTGCAAGTACGGCGT
GCACACCACGGCGGGTTGGTTCTATCCTTGCCAGAGCAGTTGGCGGTTCT
TCAACCTGCCAGGTTCTGGTTCTATCCTTGCCAGAGCAGTTGGCGGTTCT
TCAACCTGCCAGGTTCTGACGGATACAAGTACGAGGTACGGGTAAAGCCA
TGCCGCGAGACCGTCACCACCAGCGACTCGACGCAGACATCGTGGCCAAG
AATTACGGATACAAGTACGAGGTACGGGTAAAGCCATGCCGCGAGACCGT
CACCACCAGCGACTCGACGCAGACATCGTGGCCAAGAATT
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