mRNA_H-canaliculatus_F_contig15281.3922.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15281.3922.1
Unique NamemRNA_H-canaliculatus_F_contig15281.3922.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15281.3922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15281contigH-canaliculatus_F_contig15281:2034..2350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size317
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929264.7933793-UTR-H-canaliculatus_F_contig15281:2033..20381622929264.7933793-UTR-H-canaliculatus_F_contig15281:2033..2038Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15281 2034..2038 +
1696845742.2638366-UTR-H-canaliculatus_F_contig15281:2033..20381696845742.2638366-UTR-H-canaliculatus_F_contig15281:2033..2038Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15281 2034..2038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929264.8075993-CDS-H-canaliculatus_F_contig15281:2038..23501622929264.8075993-CDS-H-canaliculatus_F_contig15281:2038..2350Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15281 2039..2350 +
1696845742.2777755-CDS-H-canaliculatus_F_contig15281:2038..23501696845742.2777755-CDS-H-canaliculatus_F_contig15281:2038..2350Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15281 2039..2350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15281.3922.1prot_H-canaliculatus_F_contig15281.3922.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15281 2039..2350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15281.3922.1

>prot_H-canaliculatus_F_contig15281.3922.1 ID=prot_H-canaliculatus_F_contig15281.3922.1|Name=mRNA_H-canaliculatus_F_contig15281.3922.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=104bp
MPTLATRSACWSPHVGVWWCRCFVHLPMGFVQEQQLSASPLARESPFSRT
ASGLSLTSLSRSRAVSVGLPPTAGSPRRYAMAPNSSSAVTRVELATDPLS
SLQL
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mRNA from alignment at H-canaliculatus_F_contig15281:2034..2350+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15281.3922.1 ID=mRNA_H-canaliculatus_F_contig15281.3922.1|Name=mRNA_H-canaliculatus_F_contig15281.3922.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=317bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15281:2034..2350+ (Hapterophycus canaliculatus Oshoro5f female)
CCTCCATGCCGACGCTAGCCACAAGATCGGCTTGTTGGAGCCCGCACGTG
GGTGTTTGGTGGTGTCGCTGCTTCGTCCACTTGCCCATGGGCTTCGTGCA
AGAGCAGCAGCTATCCGCTAGTCCTTTGGCGAGAGAGAGCCCCTTCTCCC
GAACAGCGTCAGGGTTGTCATTGACATCCCTCTCCAGATCGAGAGCGGTC
TCTGTCGGGCTCCCACCCACCGCGGGGTCGCCGAGGAGATATGCCATGGC
ACCGAACTCATCCTCCGCCGTCACGAGGGTGGAGCTAGCAACCGACCCGT
TGTCGTCGCTGCAGCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15281:2034..2350+

>mRNA_H-canaliculatus_F_contig15281.3922.1 ID=mRNA_H-canaliculatus_F_contig15281.3922.1|Name=mRNA_H-canaliculatus_F_contig15281.3922.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=624bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15281:2034..2350+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCGACGCTAGCCACAAGATCGGCTTGTTGGAGCCCGCACGTGGGTGT
TTGGTGGTGTCGCTGCTTCGTCCACTTGCCCATGGGCTTCGTGCAAGAGC
AGCAGCTATCCGCTAGTCCTTTGGCGAGAGAGAGCCCCTTCTCCCGAACA
GCGTCAGGGTTGTCATTGACATCCCTCTCCAGATCGAGAGCGGTCTCTGT
CGGGCTCCCACCCACCGCGGGGTCGCCGAGGAGATATGCCATGGCACCGA
ACTCATCCTCCGCCGTCACGAGGGTGGAGCTAGCAACCGACCCGTTGTCG
TCGCTGCAGCTGATGCCGACGCTAGCCACAAGATCGGCTTGTTGGAGCCC
GCACGTGGGTGTTTGGTGGTGTCGCTGCTTCGTCCACTTGCCCATGGGCT
TCGTGCAAGAGCAGCAGCTATCCGCTAGTCCTTTGGCGAGAGAGAGCCCC
TTCTCCCGAACAGCGTCAGGGTTGTCATTGACATCCCTCTCCAGATCGAG
AGCGGTCTCTGTCGGGCTCCCACCCACCGCGGGGTCGCCGAGGAGATATG
CCATGGCACCGAACTCATCCTCCGCCGTCACGAGGGTGGAGCTAGCAACC
GACCCGTTGTCGTCGCTGCAGCTG
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