mRNA_H-canaliculatus_F_contig1528.3921.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1528.3921.1
Unique NamemRNA_H-canaliculatus_F_contig1528.3921.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1528.3921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1528contigH-canaliculatus_F_contig1528:24941..25457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size519
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929264.5319886-CDS-H-canaliculatus_F_contig1528:24940..253271622929264.5319886-CDS-H-canaliculatus_F_contig1528:24940..25327Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1528 24941..25327 +
1696845742.0818443-CDS-H-canaliculatus_F_contig1528:24940..253271696845742.0818443-CDS-H-canaliculatus_F_contig1528:24940..25327Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1528 24941..25327 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929264.5430183-UTR-H-canaliculatus_F_contig1528:25327..254571622929264.5430183-UTR-H-canaliculatus_F_contig1528:25327..25457Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1528 25328..25457 +
1696845742.0952554-UTR-H-canaliculatus_F_contig1528:25327..254571696845742.0952554-UTR-H-canaliculatus_F_contig1528:25327..25457Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1528 25328..25457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1528.3921.1prot_H-canaliculatus_F_contig1528.3921.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1528 24941..25327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1528.3921.1

>prot_H-canaliculatus_F_contig1528.3921.1 ID=prot_H-canaliculatus_F_contig1528.3921.1|Name=mRNA_H-canaliculatus_F_contig1528.3921.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=129bp
RKRWTFVKEHEEARDTERERERAQAASTKKKRRKRRQRLRQGTPLIGGSR
GGGLFEPTRWVRASWYLFLDVVSRTPTCGHWPDKSTRTKFQALGRAVRHA
LQRRLSRGQRKQPVTASRRIPPPRLRHL*
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mRNA from alignment at H-canaliculatus_F_contig1528:24941..25457+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1528.3921.1 ID=mRNA_H-canaliculatus_F_contig1528.3921.1|Name=mRNA_H-canaliculatus_F_contig1528.3921.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=517bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1528:24941..25457+ (Hapterophycus canaliculatus Oshoro5f female)
AGAAAGAGGTGGACGTTCGTAAAAGAACATGAAGAAGCAAGGGACACGGA
GAGAGAGAGAGAAAGAGCACAAGCAGCGTCCACAAAAAAGAAACGACGAA
AGCGAAGACAACGACTTCGGCAGGGCACGCCGCTCATCGGGGGCTCGCGG
GGTGGGGGGCTATTCGAACCAACACGATGGGTTCGAGCGTCCTGGTATCT
GTTCCTGGACGTCGTCTCGCGGACACCCACATGCGGACATTGGCCTGACA
AATCGACCCGTACGAAATTTCAGGCTCTAGGGAGGGCGGTGCGGCACGCA
CTCCAACGGCGGCTCAGTAGGGGGCAACGCAAACAACCAGTCACCGCCAG
CAGAAGGATCCCCCCCCCCCGGTTGCGACACCTCTAGCCAACCCAACCCA
ACCTAACCTAACCCGAGCCGCACGCGTGCATCAAAATGCTAGACACCACT
GCTTCCTTTATCTTGCTGAGGCGCCTGCCTTCCCGCCTTCCTGCCTGCAC
GCCCTCCCGCCTGCACG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1528:24941..25457+

>mRNA_H-canaliculatus_F_contig1528.3921.1 ID=mRNA_H-canaliculatus_F_contig1528.3921.1|Name=mRNA_H-canaliculatus_F_contig1528.3921.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=774bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1528:24941..25457+ (Hapterophycus canaliculatus Oshoro5f female)
AGAAAGAGGTGGACGTTCGTAAAAGAACATGAAGAAGCAAGGGACACGGA
GAGAGAGAGAGAAAGAGCACAAGCAGCGTCCACAAAAAAGAAACGACGAA
AGCGAAGACAACGACTTCGGCAGGGCACGCCGCTCATCGGGGGCTCGCGG
GGTGGGGGGCTATTCGAACCAACACGATGGGTTCGAGCGTCCTGGTATCT
GTTCCTGGACGTCGTCTCGCGGACACCCACATGCGGACATTGGCCTGACA
AATCGACCCGTACGAAATTTCAGGCTCTAGGGAGGGCGGTGCGGCACGCA
CTCCAACGGCGGCTCAGTAGGGGGCAACGCAAACAACCAGTCACCGCCAG
CAGAAGGATCCCCCCCCCCCGGTTGCGACACCTCTAGAGAAAGAGGTGGA
CGTTCGTAAAAGAACATGAAGAAGCAAGGGACACGGAGAGAGAGAGAGAA
AGAGCACAAGCAGCGTCCACAAAAAAGAAACGACGAAAGCGAAGACAACG
ACTTCGGCAGGGCACGCCGCTCATCGGGGGCTCGCGGGGTGGGGGGCTAT
TCGAACCAACACGATGGGTTCGAGCGTCCTGGTATCTGTTCCTGGACGTC
GTCTCGCGGACACCCACATGCGGACATTGGCCTGACAAATCGACCCGTAC
GAAATTTCAGGCTCTAGGGAGGGCGGTGCGGCACGCACTCCAACGGCGGC
TCAGTAGGGGGCAACGCAAACAACCAGTCACCGCCAGCAGAAGGATCCCC
CCCCCCCGGTTGCGACACCTCTAG
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