mRNA_H-canaliculatus_F_contig15278.3919.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15278.3919.1
Unique NamemRNA_H-canaliculatus_F_contig15278.3919.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15278.3919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15278contigH-canaliculatus_F_contig15278:2..1680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1666
Cds size1140
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15278.3919.1prot_H-canaliculatus_F_contig15278.3919.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15278 429..1581 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929264.4441392-UTR-H-canaliculatus_F_contig15278:1..4281622929264.4441392-UTR-H-canaliculatus_F_contig15278:1..428Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15278 2..428 -
1696845742.043203-UTR-H-canaliculatus_F_contig15278:1..4281696845742.043203-UTR-H-canaliculatus_F_contig15278:1..428Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15278 2..428 -
1622929264.489547-UTR-H-canaliculatus_F_contig15278:1581..16801622929264.489547-UTR-H-canaliculatus_F_contig15278:1581..1680Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15278 1582..1680 -
1696845742.0721753-UTR-H-canaliculatus_F_contig15278:1581..16801696845742.0721753-UTR-H-canaliculatus_F_contig15278:1581..1680Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15278 1582..1680 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929264.4621506-CDS-H-canaliculatus_F_contig15278:428..6591622929264.4621506-CDS-H-canaliculatus_F_contig15278:428..659Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15278 429..659 -
1696845742.0537627-CDS-H-canaliculatus_F_contig15278:428..6591696845742.0537627-CDS-H-canaliculatus_F_contig15278:428..659Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15278 429..659 -
1622929264.4767153-CDS-H-canaliculatus_F_contig15278:672..15811622929264.4767153-CDS-H-canaliculatus_F_contig15278:672..1581Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15278 673..1581 -
1696845742.0632093-CDS-H-canaliculatus_F_contig15278:672..15811696845742.0632093-CDS-H-canaliculatus_F_contig15278:672..1581Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15278 673..1581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15278.3919.1

>prot_H-canaliculatus_F_contig15278.3919.1 ID=prot_H-canaliculatus_F_contig15278.3919.1|Name=mRNA_H-canaliculatus_F_contig15278.3919.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=380bp
MAAEDNTPFPVDHVGGGGGGGFNHPQSASAAARMAAATEAASDMYCSSSS
SSFTLSCPLPPPSSSSSVAAAALPSDSCPSVAVPLLRSGLANVSGLGFGC
GGSGCSGDGQAVQQEQQQQQQQRRRGAPSYQSPMGREAVGEGRTGGAEGV
TPSPSRNWFVVPMTPTSQDAGGRADSRPHHPAYELDLQQQQQGKDHQEFE
LPQRPQQFNHQLAPSPGQQQQPNSQVHSYDTGSRPGYHMSPLSQQPYQKW
SPQENGTSSHGMVSSSNDFMIAAPPAPTSEAPLAASAPVHSHGGGAGAGA
GAGGRRDPGTCARRASTSHWTRSRASGAKWFSTIATFTPSRRPPERPPRP
TTSSADSAAEASAAAAAAAAASSETSGVG*
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mRNA from alignment at H-canaliculatus_F_contig15278:2..1680-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15278.3919.1 ID=mRNA_H-canaliculatus_F_contig15278.3919.1|Name=mRNA_H-canaliculatus_F_contig15278.3919.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1679bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15278:2..1680- (Hapterophycus canaliculatus Oshoro5f female)
GATCGCCCCTCTTGCGATCCTTCGGCGAGGGCCCCTACAGCGCAGGCCGT
GGCGGCGGCGGCGGCGACGGTGGCGGTGGAAACGGAAGCGGCGGTGGCGA
TGGCGGCCGAAGACAACACTCCGTTCCCGGTGGACCACGTCGGAGGCGGT
GGCGGCGGCGGCTTCAACCACCCGCAATCGGCATCGGCGGCGGCGCGCAT
GGCAGCCGCGACAGAGGCAGCGAGCGACATGTACTGTAGCAGCAGCAGCA
GCAGTTTCACCCTCTCTTGTCCGTTGCCGCCGCCGTCATCGTCATCGTCG
GTAGCGGCGGCGGCCCTCCCTTCGGACTCCTGCCCTTCGGTGGCGGTACC
CCTGCTCCGGAGTGGCTTGGCGAATGTTTCGGGGTTGGGCTTCGGGTGCG
GAGGGAGCGGCTGCAGCGGTGACGGTCAAGCTGTGCAACAGGAGCAGCAG
CAGCAGCAGCAGCAGCGGCGGCGAGGTGCACCTTCATACCAGTCGCCGAT
GGGGCGAGAAGCCGTGGGCGAAGGAAGGACCGGAGGGGCAGAGGGGGTTA
CGCCGTCGCCGTCGCGCAACTGGTTTGTAGTTCCGATGACGCCGACCTCG
CAGGACGCGGGAGGGCGAGCAGACTCCCGCCCCCACCACCCTGCCTACGA
GCTCGACCTCCAACAGCAGCAACAGGGCAAGGACCACCAAGAGTTCGAGC
TTCCGCAGCGGCCCCAGCAGTTCAACCATCAGCTTGCGCCGTCCCCGGGG
CAGCAGCAGCAGCCGAACAGCCAGGTGCATTCGTATGACACCGGCAGCCG
CCCGGGGTACCACATGTCGCCTCTTTCTCAGCAGCCATACCAAAAGTGGT
CTCCCCAGGAGAACGGGACCAGCTCGCACGGTATGGTGTCCTCCTCGAAC
GATTTCATGATCGCAGCGCCGCCGGCCCCCACTAGCGAGGCACCGTTGGC
GGCGTCGGCGCCGGTACACTCACACGGTGGTGGTGCCGGTGCCGGTGCCG
GTGCCGGTGCCGGTGTCCTAGGGACGACGAGACCCCGGCACGTGCGCGAG
GCGAGCATCGACTTCACATTGGACGAGGTCTCGAGCCTCGGGGGCGAAAT
GGTTTTCGACAATCGCGACCTTTACGCCCTCGCGTCGACCACCAGAGCGG
CCTCCTCGTCCGACCACATCGTCGGCGGACTCGGCGGCAGAGGCATCGGC
GGCGGCGGCGGCGGCAGCAGCAGCATCTTCGGAAACGTCGGGAGTGGGAT
AAGCGGCGGCAGGAAAAGCAATCACGCGGCAAGCCTCGGCGTGGAAGCGA
CGAGCTGTTCCCTTGCAGCGGGTAGCGGGCTTCAAAGGGAAGACGACAGC
AGCAACTACCTCCCGCGCCCCCCCGCGTCTGGGACCATGCAAAACCCCCC
CCTGTGGAACATGAGCACCACAACTGCCCCCTCCACGTTCTTGTCGGCGG
GGGGCGCGTGATGGCTCAGGAGAGGGCAGTCGCCGAGGTTCCTTCTCGAG
CAGGGGAGGGGGGGGTGCGAGGGGGGGAGAAGATCGACGGGTTTTGGGAG
GCAGAGGGTCTTGCGAAACCGGCGCTCTGTTGATGGGGCACGCACCTCGG
GGTCAGGGACGGCGCTAGCGCCGTGCGCGCGGTGAAATTACTCCAGGTGG
GGGGGGGGGGGGAGCGGCGGGGTTTGACG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15278:2..1680-

>mRNA_H-canaliculatus_F_contig15278.3919.1 ID=mRNA_H-canaliculatus_F_contig15278.3919.1|Name=mRNA_H-canaliculatus_F_contig15278.3919.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2280bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15278:2..1680- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGGCCGAAGACAACACTCCGTTCCCGGTGGACCACGTCGGAGGCGG
TGGCGGCGGCGGCTTCAACCACCCGCAATCGGCATCGGCGGCGGCGCGCA
TGGCAGCCGCGACAGAGGCAGCGAGCGACATGTACTGTAGCAGCAGCAGC
AGCAGTTTCACCCTCTCTTGTCCGTTGCCGCCGCCGTCATCGTCATCGTC
GGTAGCGGCGGCGGCCCTCCCTTCGGACTCCTGCCCTTCGGTGGCGGTAC
CCCTGCTCCGGAGTGGCTTGGCGAATGTTTCGGGGTTGGGCTTCGGGTGC
GGAGGGAGCGGCTGCAGCGGTGACGGTCAAGCTGTGCAACAGGAGCAGCA
GCAGCAGCAGCAGCAGCGGCGGCGAGGTGCACCTTCATACCAGTCGCCGA
TGGGGCGAGAAGCCGTGGGCGAAGGAAGGACCGGAGGGGCAGAGGGGGTT
ACGCCGTCGCCGTCGCGCAACTGGTTTGTAGTTCCGATGACGCCGACCTC
GCAGGACGCGGGAGGGCGAGCAGACTCCCGCCCCCACCACCCTGCCTACG
AGCTCGACCTCCAACAGCAGCAACAGGGCAAGGACCACCAAGAGTTCGAG
CTTCCGCAGCGGCCCCAGCAGTTCAACCATCAGCTTGCGCCGTCCCCGGG
GCAGCAGCAGCAGCCGAACAGCCAGGTGCATTCGTATGACACCGGCAGCC
GCCCGGGGTACCACATGTCGCCTCTTTCTCAGCAGCCATACCAAAAGTGG
TCTCCCCAGGAGAACGGGACCAGCTCGCACGGTATGGTGTCCTCCTCGAA
CGATTTCATGATCGCAGCGCCGCCGGCCCCCACTAGCGAGGCACCGTTGG
CGGCGTCGGCGCCGGTACACTCACACGGTGGTGGTGCCGGTGCCGGTGCC
GGTGCCGGTATGGCGGCCGAAGACAACACTCCGTTCCCGGTGGACCACGT
CGGAGGCGGTGGCGGCGGCGGCTTCAACCACCCGCAATCGGCATCGGCGG
CGGCGCGCATGGCAGCCGCGACAGAGGCAGCGAGCGACATGTACTGTAGC
AGCAGCAGCAGCAGTTTCACCCTCTCTTGTCCGTTGCCGCCGCCGTCATC
GTCATCGTCGGTAGCGGCGGCGGCCCTCCCTTCGGACTCCTGCCCTTCGG
TGGCGGTACCCCTGCTCCGGAGTGGCTTGGCGAATGTTTCGGGGTTGGGC
TTCGGGTGCGGAGGGAGCGGCTGCAGCGGTGACGGTCAAGCTGTGCAACA
GGAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCGAGGTGCACCTTCATACC
AGTCGCCGATGGGGCGAGAAGCCGTGGGCGAAGGAAGGACCGGAGGGGCA
GAGGGGGTTACGCCGTCGCCGTCGCGCAACTGGTTTGTAGTTCCGATGAC
GCCGACCTCGCAGGACGCGGGAGGGCGAGCAGACTCCCGCCCCCACCACC
CTGCCTACGAGCTCGACCTCCAACAGCAGCAACAGGGCAAGGACCACCAA
GAGTTCGAGCTTCCGCAGCGGCCCCAGCAGTTCAACCATCAGCTTGCGCC
GTCCCCGGGGCAGCAGCAGCAGCCGAACAGCCAGGTGCATTCGTATGACA
CCGGCAGCCGCCCGGGGTACCACATGTCGCCTCTTTCTCAGCAGCCATAC
CAAAAGTGGTCTCCCCAGGAGAACGGGACCAGCTCGCACGGTATGGTGTC
CTCCTCGAACGATTTCATGATCGCAGCGCCGCCGGCCCCCACTAGCGAGG
CACCGTTGGCGGCGTCGGCGCCGGTACACTCACACGGTGGTGGTGCCGGT
GCCGGTGCCGGTGCCGGTGGACGACGAGACCCCGGCACGTGCGCGAGGCG
AGCATCGACTTCACATTGGACGAGGTCTCGAGCCTCGGGGGCGAAATGGT
TTTCGACAATCGCGACCTTTACGCCCTCGCGTCGACCACCAGAGCGGCCT
CCTCGTCCGACCACATCGTCGGCGGACTCGGCGGCAGAGGCATCGGCGGC
GGCGGCGGCGGCAGCAGCAGCATCTTCGGAAACGTCGGGAGTGGGATAAG
GACGACGAGACCCCGGCACGTGCGCGAGGCGAGCATCGACTTCACATTGG
ACGAGGTCTCGAGCCTCGGGGGCGAAATGGTTTTCGACAATCGCGACCTT
TACGCCCTCGCGTCGACCACCAGAGCGGCCTCCTCGTCCGACCACATCGT
CGGCGGACTCGGCGGCAGAGGCATCGGCGGCGGCGGCGGCGGCAGCAGCA
GCATCTTCGGAAACGTCGGGAGTGGGATAA
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