mRNA_H-canaliculatus_F_contig15268.3916.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15268.3916.1
Unique NamemRNA_H-canaliculatus_F_contig15268.3916.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15268.3916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15268contigH-canaliculatus_F_contig15268:690..1762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1073
Cds size1059
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929263.9628718-UTR-H-canaliculatus_F_contig15268:689..7031622929263.9628718-UTR-H-canaliculatus_F_contig15268:689..703Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15268 690..703 +
1696845741.7722378-UTR-H-canaliculatus_F_contig15268:689..7031696845741.7722378-UTR-H-canaliculatus_F_contig15268:689..703Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15268 690..703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929263.9789505-CDS-H-canaliculatus_F_contig15268:703..17621622929263.9789505-CDS-H-canaliculatus_F_contig15268:703..1762Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15268 704..1762 +
1696845741.7837095-CDS-H-canaliculatus_F_contig15268:703..17621696845741.7837095-CDS-H-canaliculatus_F_contig15268:703..1762Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15268 704..1762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15268.3916.1prot_H-canaliculatus_F_contig15268.3916.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15268 704..1762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15268.3916.1

>prot_H-canaliculatus_F_contig15268.3916.1 ID=prot_H-canaliculatus_F_contig15268.3916.1|Name=mRNA_H-canaliculatus_F_contig15268.3916.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=353bp
MDSSSLVDYEKDDDPLLPNTRLRDSPVHSASGSPSPPTSPGTSTAAAAAP
ATASASDASPAVAGDPALRAKVDHARAALAVSTQRRHSRTLQQQLADVKQ
GLHRKQTLLREKQRREQDEARAAAQAEQQRQLEEDGAQQAAANRALEAEL
AELQAATAEVDAQLAGRIPAGTGRKSQVNDQVPSSDDRPSFFVTMSTSPS
PGSAEATSTDLDAYIEPSAPIAAASAPVFSDAADYVFDDLDKFYQHAPLN
QPAHETPIAHITGANEAWCGCRTIARGYYQHKKQITVGDLLRIPSRKLSP
AEYALRCRLVGMFRTGFMGVSSAQGRSLAVSAPPSAPPAPLPEPPHLAQH
QRS
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mRNA from alignment at H-canaliculatus_F_contig15268:690..1762+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15268.3916.1 ID=mRNA_H-canaliculatus_F_contig15268.3916.1|Name=mRNA_H-canaliculatus_F_contig15268.3916.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1073bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15268:690..1762+ (Hapterophycus canaliculatus Oshoro5f female)
AGCGGGATCATACCATGGACAGCTCTTCACTGGTGGACTACGAAAAAGAC
GACGATCCTCTGCTACCGAATACACGGCTTCGCGACAGTCCTGTGCATTC
GGCTTCGGGGTCTCCCTCTCCGCCGACATCTCCTGGTACCTCCACGGCAG
CTGCTGCTGCCCCGGCTACTGCCTCTGCCTCTGATGCTTCCCCCGCCGTC
GCGGGTGACCCGGCATTGCGGGCAAAGGTGGATCATGCCAGAGCCGCACT
TGCCGTGTCGACACAGCGTCGCCATTCCCGAACGCTTCAACAGCAGTTGG
CGGACGTCAAGCAGGGCTTGCACCGCAAGCAGACTCTGTTGCGGGAGAAG
CAACGACGGGAACAAGACGAGGCGCGTGCGGCAGCCCAGGCGGAACAACA
GCGCCAGCTTGAAGAAGACGGGGCTCAGCAGGCCGCAGCTAACAGGGCCC
TCGAAGCCGAACTGGCCGAACTTCAGGCCGCTACTGCCGAGGTGGACGCG
CAGCTCGCTGGGCGGATCCCCGCTGGAACCGGCCGCAAATCGCAGGTGAA
CGATCAGGTTCCTTCCTCAGACGATCGACCTTCGTTTTTCGTTACCATGT
CGACCTCCCCCTCCCCCGGTTCCGCAGAAGCCACGTCTACCGACCTGGAC
GCATATATCGAGCCCTCCGCACCTATTGCCGCGGCCTCTGCTCCGGTTTT
CTCCGATGCTGCAGACTATGTGTTTGACGATTTGGACAAGTTTTATCAGC
ATGCCCCGTTGAATCAGCCGGCACATGAAACACCCATCGCCCACATTACG
GGTGCCAACGAAGCCTGGTGCGGGTGCCGTACGATTGCGAGGGGTTACTA
CCAGCACAAAAAACAAATTACAGTCGGCGACTTGCTCCGCATCCCCTCGA
GGAAATTGTCTCCTGCGGAATATGCTCTTCGTTGCCGACTTGTGGGTATG
TTTCGTACCGGATTTATGGGTGTTTCTTCTGCGCAAGGCCGCTCTTTGGC
TGTTTCTGCACCCCCTTCGGCTCCTCCCGCTCCCCTTCCCGAGCCGCCGC
ATCTCGCCCAGCACCAGCGGTCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15268:690..1762+

>mRNA_H-canaliculatus_F_contig15268.3916.1 ID=mRNA_H-canaliculatus_F_contig15268.3916.1|Name=mRNA_H-canaliculatus_F_contig15268.3916.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2118bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15268:690..1762+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACAGCTCTTCACTGGTGGACTACGAAAAAGACGACGATCCTCTGCT
ACCGAATACACGGCTTCGCGACAGTCCTGTGCATTCGGCTTCGGGGTCTC
CCTCTCCGCCGACATCTCCTGGTACCTCCACGGCAGCTGCTGCTGCCCCG
GCTACTGCCTCTGCCTCTGATGCTTCCCCCGCCGTCGCGGGTGACCCGGC
ATTGCGGGCAAAGGTGGATCATGCCAGAGCCGCACTTGCCGTGTCGACAC
AGCGTCGCCATTCCCGAACGCTTCAACAGCAGTTGGCGGACGTCAAGCAG
GGCTTGCACCGCAAGCAGACTCTGTTGCGGGAGAAGCAACGACGGGAACA
AGACGAGGCGCGTGCGGCAGCCCAGGCGGAACAACAGCGCCAGCTTGAAG
AAGACGGGGCTCAGCAGGCCGCAGCTAACAGGGCCCTCGAAGCCGAACTG
GCCGAACTTCAGGCCGCTACTGCCGAGGTGGACGCGCAGCTCGCTGGGCG
GATCCCCGCTGGAACCGGCCGCAAATCGCAGGTGAACGATCAGGTTCCTT
CCTCAGACGATCGACCTTCGTTTTTCGTTACCATGTCGACCTCCCCCTCC
CCCGGTTCCGCAGAAGCCACGTCTACCGACCTGGACGCATATATCGAGCC
CTCCGCACCTATTGCCGCGGCCTCTGCTCCGGTTTTCTCCGATGCTGCAG
ACTATGTGTTTGACGATTTGGACAAGTTTTATCAGCATGCCCCGTTGAAT
CAGCCGGCACATGAAACACCCATCGCCCACATTACGGGTGCCAACGAAGC
CTGGTGCGGGTGCCGTACGATTGCGAGGGGTTACTACCAGCACAAAAAAC
AAATTACAGTCGGCGACTTGCTCCGCATCCCCTCGAGGAAATTGTCTCCT
GCGGAATATGCTCTTCGTTGCCGACTTGTGGGTATGTTTCGTACCGGATT
TATGGGTGTTTCTTCTGCGCAAGGCCGCTCTTTGGCTGTTTCTGCACCCC
CTTCGGCTCCTCCCGCTCCCCTTCCCGAGCCGCCGCATCTCGCCCAGCAC
CAGCGGTCAATGGACAGCTCTTCACTGGTGGACTACGAAAAAGACGACGA
TCCTCTGCTACCGAATACACGGCTTCGCGACAGTCCTGTGCATTCGGCTT
CGGGGTCTCCCTCTCCGCCGACATCTCCTGGTACCTCCACGGCAGCTGCT
GCTGCCCCGGCTACTGCCTCTGCCTCTGATGCTTCCCCCGCCGTCGCGGG
TGACCCGGCATTGCGGGCAAAGGTGGATCATGCCAGAGCCGCACTTGCCG
TGTCGACACAGCGTCGCCATTCCCGAACGCTTCAACAGCAGTTGGCGGAC
GTCAAGCAGGGCTTGCACCGCAAGCAGACTCTGTTGCGGGAGAAGCAACG
ACGGGAACAAGACGAGGCGCGTGCGGCAGCCCAGGCGGAACAACAGCGCC
AGCTTGAAGAAGACGGGGCTCAGCAGGCCGCAGCTAACAGGGCCCTCGAA
GCCGAACTGGCCGAACTTCAGGCCGCTACTGCCGAGGTGGACGCGCAGCT
CGCTGGGCGGATCCCCGCTGGAACCGGCCGCAAATCGCAGGTGAACGATC
AGGTTCCTTCCTCAGACGATCGACCTTCGTTTTTCGTTACCATGTCGACC
TCCCCCTCCCCCGGTTCCGCAGAAGCCACGTCTACCGACCTGGACGCATA
TATCGAGCCCTCCGCACCTATTGCCGCGGCCTCTGCTCCGGTTTTCTCCG
ATGCTGCAGACTATGTGTTTGACGATTTGGACAAGTTTTATCAGCATGCC
CCGTTGAATCAGCCGGCACATGAAACACCCATCGCCCACATTACGGGTGC
CAACGAAGCCTGGTGCGGGTGCCGTACGATTGCGAGGGGTTACTACCAGC
ACAAAAAACAAATTACAGTCGGCGACTTGCTCCGCATCCCCTCGAGGAAA
TTGTCTCCTGCGGAATATGCTCTTCGTTGCCGACTTGTGGGTATGTTTCG
TACCGGATTTATGGGTGTTTCTTCTGCGCAAGGCCGCTCTTTGGCTGTTT
CTGCACCCCCTTCGGCTCCTCCCGCTCCCCTTCCCGAGCCGCCGCATCTC
GCCCAGCACCAGCGGTCA
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