mRNA_H-canaliculatus_F_contig15265.3915.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15265.3915.1
Unique NamemRNA_H-canaliculatus_F_contig15265.3915.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15265.3915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15265contigH-canaliculatus_F_contig15265:1530..2192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size174
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929263.8262029-CDS-H-canaliculatus_F_contig15265:1531..16161622929263.8262029-CDS-H-canaliculatus_F_contig15265:1531..1616Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15265 1532..1616 -
1696845741.743497-CDS-H-canaliculatus_F_contig15265:1531..16161696845741.743497-CDS-H-canaliculatus_F_contig15265:1531..1616Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15265 1532..1616 -
1622929263.8433383-CDS-H-canaliculatus_F_contig15265:2106..21921622929263.8433383-CDS-H-canaliculatus_F_contig15265:2106..2192Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15265 2107..2192 -
1696845741.7520814-CDS-H-canaliculatus_F_contig15265:2106..21921696845741.7520814-CDS-H-canaliculatus_F_contig15265:2106..2192Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15265 2107..2192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15265.3915.1prot_H-canaliculatus_F_contig15265.3915.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15265 1532..2192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15265.3915.1

>prot_H-canaliculatus_F_contig15265.3915.1 ID=prot_H-canaliculatus_F_contig15265.3915.1|Name=mRNA_H-canaliculatus_F_contig15265.3915.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=57bp
VARFGLQKGQGCALESGGPLAKDAVHSARCGYCGCRPSKPASFTARTIHI
NKAWTPL
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mRNA from alignment at H-canaliculatus_F_contig15265:1530..2192-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15265.3915.1 ID=mRNA_H-canaliculatus_F_contig15265.3915.1|Name=mRNA_H-canaliculatus_F_contig15265.3915.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=663bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15265:1530..2192- (Hapterophycus canaliculatus Oshoro5f female)
GTGGCACGTTTCGGTCTCCAAAAAGGGCAGGGCTGTGCGCTGGAGTCCGG
GGGTCCGCTTGCGAAGGACGCGGTTCACTCTGCTCGGTACGTCTGGCATG
AACCCATCGCATCAATAATAGCGCATGGCGGTCGTTCGGGGGGAGTGATC
GTTCATGGCGGTTGTCCGGGGGGGTGATCGTTCATGGATCGTTTCTTTCA
TGCGGCCTTCACCTTTTCCATGCGCGGGCCTGTGGTGCCCGCACCAACCA
CAGCATTCGTGGCTGTCAGCTACAGTAAGGCGGCCCTTGGGTTCTTATGT
CTGTCCGGCAACGTTCATTTCGGCGTACCGTCCCGGTCGCACCTGTCGCC
TCAGCTGGCGACACCTGTGTTCGCACGCACCCACCATATCATAGGGCGTG
GCGGCCTCTGTGGGAAACGCGTTACTCCCGCGTCGTTTCCCCCGTGGCGG
CGACTGCTGTTCCCTTCGAGTTATTTTATTCTTGCCGATTTATATTGTTC
CCTTCGAGTTATTTTATTCTTGGCGATTTATATTATTCGTTCTACACGTA
CCAACCGCATAAATCGTGATTGACAGCTGCGGTTATTGCGGCTGTCGTCC
TTCGAAGCCTGCATCATTCACGGCGCGTACCATTCACATCAATAAGGCAT
GGACGCCGCTGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15265:1530..2192-

>mRNA_H-canaliculatus_F_contig15265.3915.1 ID=mRNA_H-canaliculatus_F_contig15265.3915.1|Name=mRNA_H-canaliculatus_F_contig15265.3915.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=342bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15265:1530..2192- (Hapterophycus canaliculatus Oshoro5f female)
GTGGCACGTTTCGGTCTCCAAAAAGGGCAGGGCTGTGCGCTGGAGTCCGG
GGGTCCGCTTGCGAAGGACGCGGTTCACTCTGCTCGGTGGCACGTTTCGG
TCTCCAAAAAGGGCAGGGCTGTGCGCTGGAGTCCGGGGGTCCGCTTGCGA
AGGACGCGGTTCACTCTGCTCGCTGCGGTTATTGCGGCTGTCGTCCTTCG
AAGCCTGCATCATTCACGGCGCGTACCATTCACATCAATAAGGCATGGAC
GCCGCTGCTGCGGTTATTGCGGCTGTCGTCCTTCGAAGCCTGCATCATTC
ACGGCGCGTACCATTCACATCAATAAGGCATGGACGCCGCTG
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