mRNA_H-canaliculatus_F_contig1526.3913.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1526.3913.1
Unique NamemRNA_H-canaliculatus_F_contig1526.3913.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1526.3913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1526contigH-canaliculatus_F_contig1526:17206..17983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size778
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1526.3913.1prot_H-canaliculatus_F_contig1526.3913.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1526 17322..17801 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929263.7452896-UTR-H-canaliculatus_F_contig1526:17205..173211622929263.7452896-UTR-H-canaliculatus_F_contig1526:17205..17321Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1526 17206..17321 +
1696845741.7136528-UTR-H-canaliculatus_F_contig1526:17205..173211696845741.7136528-UTR-H-canaliculatus_F_contig1526:17205..17321Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1526 17206..17321 +
1622929263.7783594-UTR-H-canaliculatus_F_contig1526:17801..179831622929263.7783594-UTR-H-canaliculatus_F_contig1526:17801..17983Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1526 17802..17983 +
1696845741.7328234-UTR-H-canaliculatus_F_contig1526:17801..179831696845741.7328234-UTR-H-canaliculatus_F_contig1526:17801..17983Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1526 17802..17983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929263.7650077-CDS-H-canaliculatus_F_contig1526:17321..178011622929263.7650077-CDS-H-canaliculatus_F_contig1526:17321..17801Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1526 17322..17801 +
1696845741.7223816-CDS-H-canaliculatus_F_contig1526:17321..178011696845741.7223816-CDS-H-canaliculatus_F_contig1526:17321..17801Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1526 17322..17801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1526.3913.1

>prot_H-canaliculatus_F_contig1526.3913.1 ID=prot_H-canaliculatus_F_contig1526.3913.1|Name=mRNA_H-canaliculatus_F_contig1526.3913.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=160bp
MMTLWPRTNITLRTGSFFSPLAGEASYPCYNCPSQPTLWTSDPLFSSART
SKLFYLLSSATLSANSSHSKPKRCLRPPPLSHVSCGRTIPYCGTRDHNAL
CLGTKYFCNVSTYESRHFTCRKKRGHSKTETHPHSPSIIHLQRSRDTNFT
GNNADYSRG*
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mRNA from alignment at H-canaliculatus_F_contig1526:17206..17983+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1526.3913.1 ID=mRNA_H-canaliculatus_F_contig1526.3913.1|Name=mRNA_H-canaliculatus_F_contig1526.3913.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=778bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1526:17206..17983+ (Hapterophycus canaliculatus Oshoro5f female)
GGTATGTTTATCATATGAACGCCGTTACTATTGGATCTATTTCACTGAGA
GAAGATTCGAAACAGAAAACACACCTCTCATGATTGCAACGAAGCCGTCA
CACCAATTTTGCTACGATGATGACTTTGTGGCCGAGGACGAACATAACCC
TGCGAACCGGGAGTTTTTTCTCCCCGCTCGCTGGAGAAGCGAGTTACCCT
TGTTATAACTGTCCATCTCAGCCCACATTGTGGACGAGCGACCCACTATT
TTCATCTGCGAGAACCAGCAAACTCTTCTACCTTCTTTCGTCCGCGACCT
TGTCAGCAAACTCCTCTCACAGCAAGCCAAAACGTTGCCTACGGCCGCCA
CCGCTTTCTCACGTCAGTTGTGGCCGTACAATTCCATACTGTGGAACTCG
CGACCACAACGCCCTGTGTCTGGGCACAAAATACTTTTGTAATGTGTCAA
CATATGAAAGCCGTCACTTCACCTGTCGCAAGAAAAGGGGACATTCCAAA
ACGGAAACACATCCACACTCCCCGAGTATCATCCATCTGCAACGAAGCCG
TGACACCAACTTTACAGGAAACAATGCTGATTATAGCCGAGGTTGAATGC
TTCCTGTTGACTCTCGAGATATTTTTGTCACACATGGTCAAGTCACGCCA
GAGCGCGGCACCTTGCCGCGTTGTGAGCTAACGGCCTACCCACTGTTCAC
CGCGGTTGGACCAGCAAATCTTTCCGTCCGTGACCTTGTCAGCAGCAGAC
CCTGTTCACAGCACCCCAAAACCTTGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1526:17206..17983+

>mRNA_H-canaliculatus_F_contig1526.3913.1 ID=mRNA_H-canaliculatus_F_contig1526.3913.1|Name=mRNA_H-canaliculatus_F_contig1526.3913.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=960bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1526:17206..17983+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATGACTTTGTGGCCGAGGACGAACATAACCCTGCGAACCGGGAGTTT
TTTCTCCCCGCTCGCTGGAGAAGCGAGTTACCCTTGTTATAACTGTCCAT
CTCAGCCCACATTGTGGACGAGCGACCCACTATTTTCATCTGCGAGAACC
AGCAAACTCTTCTACCTTCTTTCGTCCGCGACCTTGTCAGCAAACTCCTC
TCACAGCAAGCCAAAACGTTGCCTACGGCCGCCACCGCTTTCTCACGTCA
GTTGTGGCCGTACAATTCCATACTGTGGAACTCGCGACCACAACGCCCTG
TGTCTGGGCACAAAATACTTTTGTAATGTGTCAACATATGAAAGCCGTCA
CTTCACCTGTCGCAAGAAAAGGGGACATTCCAAAACGGAAACACATCCAC
ACTCCCCGAGTATCATCCATCTGCAACGAAGCCGTGACACCAACTTTACA
GGAAACAATGCTGATTATAGCCGAGGTTGAATGATGACTTTGTGGCCGAG
GACGAACATAACCCTGCGAACCGGGAGTTTTTTCTCCCCGCTCGCTGGAG
AAGCGAGTTACCCTTGTTATAACTGTCCATCTCAGCCCACATTGTGGACG
AGCGACCCACTATTTTCATCTGCGAGAACCAGCAAACTCTTCTACCTTCT
TTCGTCCGCGACCTTGTCAGCAAACTCCTCTCACAGCAAGCCAAAACGTT
GCCTACGGCCGCCACCGCTTTCTCACGTCAGTTGTGGCCGTACAATTCCA
TACTGTGGAACTCGCGACCACAACGCCCTGTGTCTGGGCACAAAATACTT
TTGTAATGTGTCAACATATGAAAGCCGTCACTTCACCTGTCGCAAGAAAA
GGGGACATTCCAAAACGGAAACACATCCACACTCCCCGAGTATCATCCAT
CTGCAACGAAGCCGTGACACCAACTTTACAGGAAACAATGCTGATTATAG
CCGAGGTTGA
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