mRNA_H-canaliculatus_F_contig15259.3912.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15259.3912.1
Unique NamemRNA_H-canaliculatus_F_contig15259.3912.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Match: A0A6H5L587_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L587_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 3.980e-27
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 1
Query:    7 VLGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRCGTLQP 168
            VLGCPHY+RACK+RAPCCQKLFTCRLCHDQ SDH VDR++VTEMLCMRC TLQP
Sbjct:  838 VLGCPHYRRACKIRAPCCQKLFTCRLCHDQVSDHKVDREEVTEMLCMRCETLQP 891          
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Match: A0A835Z9Z4_9STRA (Zinc ion binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Z4_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.070e-23
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1
Query:    7 VLGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRCGTLQP 168
            +LGCPHYQR  K+RAPCC +LFTCRLCHDQ  DHT+DR +V EMLCM CG LQP
Sbjct:    1 MLGCPHYQRRTKLRAPCCGRLFTCRLCHDQVMDHTMDRYRVVEMLCMVCGALQP 54          
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Match: D8TUF3_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TUF3_VOLCA)

HSP 1 Score: 92.0 bits (227), Expect = 2.290e-20
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1
Query:    7 VLGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRCGTLQP 168
            +LGC HYQR C++ APCC K+FTCRLCHD ASDH +DR  VTEM CM CGT QP
Sbjct:  967 ILGCQHYQRKCQLVAPCCGKIFTCRLCHDAASDHRMDRYAVTEMRCMMCGTRQP 1020          
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Match: A0A6A4NNJ5_LUPAL (Putative aminoacyltransferase, E1 ubiquitin-activating enzyme n=2 Tax=Lupinus albus TaxID=3870 RepID=A0A6A4NNJ5_LUPAL)

HSP 1 Score: 91.7 bits (226), Expect = 3.130e-20
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 KVVLGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRCGTLQP 168
            K VLGC HYQR CK+RA CC KLFTCR CHD  SDH++DR+   EM+CMRC T+QP
Sbjct:  985 KQVLGCEHYQRNCKLRAACCGKLFTCRFCHDNMSDHSMDRKATLEMMCMRCLTIQP 1040          
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Match: A0A7S1XWB5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWB5_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 4.260e-20
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 1
Query:   10 LGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRCGTLQP 168
            LGCPHY+R  K+RAPCC KL TCRLCHDQA DH ++R  V EMLCM CGTLQP
Sbjct:  531 LGCPHYKRKVKLRAPCCDKLVTCRLCHDQACDHMMNRFAVEEMLCMVCGTLQP 583          
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Match: UPI001CB941A6 (zinc finger protein BRUTUS n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB941A6)

HSP 1 Score: 90.9 bits (224), Expect = 5.830e-20
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 KVVLGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRCGTLQP 168
            K V GC HY+R CK+RA CCQKLFTCR CHD  SDHT+DR+  TEM+CM C  +QP
Sbjct:  935 KQVFGCEHYKRNCKLRAACCQKLFTCRFCHDNVSDHTMDRKATTEMMCMNCLKVQP 990          
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Match: A0A2J6LFX6_LACSA (Uncharacterized protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6LFX6_LACSA)

HSP 1 Score: 90.9 bits (224), Expect = 5.830e-20
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 KVVLGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRCGTLQP 168
            K + GC HY+R CK+RA CCQKLFTCR CHD  SDHT+DR+  TEM+CM C  +QP
Sbjct:  945 KQIFGCEHYKRNCKLRAACCQKLFTCRFCHDNVSDHTMDRKATTEMMCMNCLKIQP 1000          
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Match: UPI000C9D812A (zinc finger protein BRUTUS-like n=1 Tax=Cucurbita pepo subsp. pepo TaxID=3664 RepID=UPI000C9D812A)

HSP 1 Score: 85.1 bits (209), Expect = 6.120e-20
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 KVVLGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRCGTLQP 168
            K V GC HY+R CK+ A CC KLFTCR CHD  SDH++DR+  +EM+CM C T+QP
Sbjct:   38 KKVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQP 93          
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Match: A0A251U3C6_HELAN (Putative rubredoxin-type fold protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251U3C6_HELAN)

HSP 1 Score: 90.5 bits (223), Expect = 7.970e-20
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 KVVLGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRCGTLQP 168
            K + GC HY+R CK+RA CCQKLFTCR CHD  SDHT+DR+  TEM+CM C  +QP
Sbjct:  929 KQIFGCEHYKRNCKLRAACCQKLFTCRFCHDNVSDHTMDRKATTEMMCMNCLKVQP 984          
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Match: A0A6A1UYY5_9ROSI (Putative RING finger protein C2F3.16 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1UYY5_9ROSI)

HSP 1 Score: 87.8 bits (216), Expect = 9.820e-20
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 KVVLGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRCGTLQP 168
            K VLGC HY+R CK+RA CC KL+TCR CHD+ASDH++DR+   EM+CM C  +QP
Sbjct:   22 KQVLGCEHYKRNCKLRAACCGKLYTCRFCHDKASDHSMDRKATAEMMCMHCMKIQP 77          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L587_9PHAE3.980e-2787.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9Z4_9STRA4.070e-2374.07Zinc ion binding protein n=1 Tax=Tribonema minus T... [more]
D8TUF3_VOLCA2.290e-2070.37Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A6A4NNJ5_LUPAL3.130e-2067.86Putative aminoacyltransferase, E1 ubiquitin-activa... [more]
A0A7S1XWB5_9STRA4.260e-2073.58Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
UPI001CB941A65.830e-2066.07zinc finger protein BRUTUS n=1 Tax=Erigeron canade... [more]
A0A2J6LFX6_LACSA5.830e-2064.29Uncharacterized protein n=2 Tax=Lactuca TaxID=4235... [more]
UPI000C9D812A6.120e-2060.71zinc finger protein BRUTUS-like n=1 Tax=Cucurbita ... [more]
A0A251U3C6_HELAN7.970e-2064.29Putative rubredoxin-type fold protein n=1 Tax=Heli... [more]
A0A6A1UYY5_9ROSI9.820e-2062.50Putative RING finger protein C2F3.16 n=1 Tax=Morel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15259contigH-canaliculatus_F_contig15259:1313..1483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue7.4e-22
Seed eggNOG ortholog2880.D7FUX1
KEGG koko:K16276
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG1940@1,KOG1940@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929263.6991649-CDS-H-canaliculatus_F_contig15259:1312..14831622929263.6991649-CDS-H-canaliculatus_F_contig15259:1312..1483Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15259 1313..1483 +
1696845741.7024422-CDS-H-canaliculatus_F_contig15259:1312..14831696845741.7024422-CDS-H-canaliculatus_F_contig15259:1312..1483Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15259 1313..1483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15259.3912.1prot_H-canaliculatus_F_contig15259.3912.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15259 1313..1483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15259.3912.1

>prot_H-canaliculatus_F_contig15259.3912.1 ID=prot_H-canaliculatus_F_contig15259.3912.1|Name=mRNA_H-canaliculatus_F_contig15259.3912.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=57bp
KVVLGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMR
CGTLQPM
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mRNA from alignment at H-canaliculatus_F_contig15259:1313..1483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15259.3912.1 ID=mRNA_H-canaliculatus_F_contig15259.3912.1|Name=mRNA_H-canaliculatus_F_contig15259.3912.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=171bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15259:1313..1483+ (Hapterophycus canaliculatus Oshoro5f female)
AAGGTGGTGCTCGGCTGTCCGCACTACCAGAGGGCGTGCAAGATGCGGGC GCCCTGCTGCCAAAAGCTGTTTACCTGCCGGCTGTGCCACGACCAGGCGT CGGATCACACCGTGGACAGGCAGAAGGTGACGGAGATGCTCTGCATGCGC TGCGGGACCCTGCAGCCGATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15259:1313..1483+

>mRNA_H-canaliculatus_F_contig15259.3912.1 ID=mRNA_H-canaliculatus_F_contig15259.3912.1|Name=mRNA_H-canaliculatus_F_contig15259.3912.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=342bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15259:1313..1483+ (Hapterophycus canaliculatus Oshoro5f female)
AAGGTGGTGCTCGGCTGTCCGCACTACCAGAGGGCGTGCAAGATGCGGGC
GCCCTGCTGCCAAAAGCTGTTTACCTGCCGGCTGTGCCACGACCAGGCGT
CGGATCACACCGTGGACAGGCAGAAGGTGACGGAGATGCTCTGCATGCGC
TGCGGGACCCTGCAGCCGATGAAGGTGGTGCTCGGCTGTCCGCACTACCA
GAGGGCGTGCAAGATGCGGGCGCCCTGCTGCCAAAAGCTGTTTACCTGCC
GGCTGTGCCACGACCAGGCGTCGGATCACACCGTGGACAGGCAGAAGGTG
ACGGAGATGCTCTGCATGCGCTGCGGGACCCTGCAGCCGATG
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