mRNA_H-canaliculatus_F_contig15259.3912.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Match: A0A6H5L587_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L587_9PHAE) HSP 1 Score: 111 bits (277), Expect = 3.980e-27 Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 1
Query: 7 VLGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRCGTLQP 168
VLGCPHY+RACK+RAPCCQKLFTCRLCHDQ SDH VDR++VTEMLCMRC TLQP
Sbjct: 838 VLGCPHYRRACKIRAPCCQKLFTCRLCHDQVSDHKVDREEVTEMLCMRCETLQP 891
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Match: A0A835Z9Z4_9STRA (Zinc ion binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Z4_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 4.070e-23 Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1
Query: 7 VLGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRCGTLQP 168
+LGCPHYQR K+RAPCC +LFTCRLCHDQ DHT+DR +V EMLCM CG LQP
Sbjct: 1 MLGCPHYQRRTKLRAPCCGRLFTCRLCHDQVMDHTMDRYRVVEMLCMVCGALQP 54
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Match: D8TUF3_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TUF3_VOLCA) HSP 1 Score: 92.0 bits (227), Expect = 2.290e-20 Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1
Query: 7 VLGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRCGTLQP 168
+LGC HYQR C++ APCC K+FTCRLCHD ASDH +DR VTEM CM CGT QP
Sbjct: 967 ILGCQHYQRKCQLVAPCCGKIFTCRLCHDAASDHRMDRYAVTEMRCMMCGTRQP 1020
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Match: A0A6A4NNJ5_LUPAL (Putative aminoacyltransferase, E1 ubiquitin-activating enzyme n=2 Tax=Lupinus albus TaxID=3870 RepID=A0A6A4NNJ5_LUPAL) HSP 1 Score: 91.7 bits (226), Expect = 3.130e-20 Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 1
Query: 1 KVVLGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRCGTLQP 168
K VLGC HYQR CK+RA CC KLFTCR CHD SDH++DR+ EM+CMRC T+QP
Sbjct: 985 KQVLGCEHYQRNCKLRAACCGKLFTCRFCHDNMSDHSMDRKATLEMMCMRCLTIQP 1040
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Match: A0A7S1XWB5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWB5_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 4.260e-20 Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 1
Query: 10 LGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRCGTLQP 168
LGCPHY+R K+RAPCC KL TCRLCHDQA DH ++R V EMLCM CGTLQP
Sbjct: 531 LGCPHYKRKVKLRAPCCDKLVTCRLCHDQACDHMMNRFAVEEMLCMVCGTLQP 583
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Match: UPI001CB941A6 (zinc finger protein BRUTUS n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB941A6) HSP 1 Score: 90.9 bits (224), Expect = 5.830e-20 Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 1
Query: 1 KVVLGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRCGTLQP 168
K V GC HY+R CK+RA CCQKLFTCR CHD SDHT+DR+ TEM+CM C +QP
Sbjct: 935 KQVFGCEHYKRNCKLRAACCQKLFTCRFCHDNVSDHTMDRKATTEMMCMNCLKVQP 990
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Match: A0A2J6LFX6_LACSA (Uncharacterized protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6LFX6_LACSA) HSP 1 Score: 90.9 bits (224), Expect = 5.830e-20 Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 1
Query: 1 KVVLGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRCGTLQP 168
K + GC HY+R CK+RA CCQKLFTCR CHD SDHT+DR+ TEM+CM C +QP
Sbjct: 945 KQIFGCEHYKRNCKLRAACCQKLFTCRFCHDNVSDHTMDRKATTEMMCMNCLKIQP 1000
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Match: UPI000C9D812A (zinc finger protein BRUTUS-like n=1 Tax=Cucurbita pepo subsp. pepo TaxID=3664 RepID=UPI000C9D812A) HSP 1 Score: 85.1 bits (209), Expect = 6.120e-20 Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 1 KVVLGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRCGTLQP 168
K V GC HY+R CK+ A CC KLFTCR CHD SDH++DR+ +EM+CM C T+QP
Sbjct: 38 KKVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQP 93
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Match: A0A251U3C6_HELAN (Putative rubredoxin-type fold protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251U3C6_HELAN) HSP 1 Score: 90.5 bits (223), Expect = 7.970e-20 Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 1
Query: 1 KVVLGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRCGTLQP 168
K + GC HY+R CK+RA CCQKLFTCR CHD SDHT+DR+ TEM+CM C +QP
Sbjct: 929 KQIFGCEHYKRNCKLRAACCQKLFTCRFCHDNVSDHTMDRKATTEMMCMNCLKVQP 984
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Match: A0A6A1UYY5_9ROSI (Putative RING finger protein C2F3.16 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1UYY5_9ROSI) HSP 1 Score: 87.8 bits (216), Expect = 9.820e-20 Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1
Query: 1 KVVLGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRCGTLQP 168
K VLGC HY+R CK+RA CC KL+TCR CHD+ASDH++DR+ EM+CM C +QP
Sbjct: 22 KQVLGCEHYKRNCKLRAACCGKLYTCRFCHDKASDHSMDRKATAEMMCMHCMKIQP 77 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15259.3912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig15259.3912.1 >prot_H-canaliculatus_F_contig15259.3912.1 ID=prot_H-canaliculatus_F_contig15259.3912.1|Name=mRNA_H-canaliculatus_F_contig15259.3912.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=57bp KVVLGCPHYQRACKMRAPCCQKLFTCRLCHDQASDHTVDRQKVTEMLCMRback to top mRNA from alignment at H-canaliculatus_F_contig15259:1313..1483+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig15259.3912.1 ID=mRNA_H-canaliculatus_F_contig15259.3912.1|Name=mRNA_H-canaliculatus_F_contig15259.3912.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=171bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15259:1313..1483+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15259:1313..1483+ >mRNA_H-canaliculatus_F_contig15259.3912.1 ID=mRNA_H-canaliculatus_F_contig15259.3912.1|Name=mRNA_H-canaliculatus_F_contig15259.3912.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=342bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15259:1313..1483+ (Hapterophycus canaliculatus Oshoro5f female)back to top |