mRNA_H-canaliculatus_F_contig15253.3911.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15253.3911.1
Unique NamemRNA_H-canaliculatus_F_contig15253.3911.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15253.3911.1 vs. uniprot
Match: D7FVZ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ0_ECTSI)

HSP 1 Score: 405 bits (1041), Expect = 1.530e-130
Identity = 311/534 (58.24%), Postives = 343/534 (64.23%), Query Frame = 1 
Query:    1 QPRSSAHTQQQWREXXXXEDALTYALDKFKTSETDGAAGTKGADAASAVEGSCSNEDSTVCNSPWSSERGSGGGSSVAGFGGGALRASSAHGASDGRFRSRSGTAPDNGAPPEQALKDAAACQGRRGRTPSH-GDGSGDGEKRDWNWRSYSPPSSLSRQK----DGDSAEGGVKKRYASPRARQSASGLPSVDGVGSSGSNGNGKPPXSPGGAVDSFD-----GAXXXXXXVLGESVVRSSGGYLPPRHPLATLQLSPASHRGAGGSDSGENGPGEGGAENLVDPPRETGADTKXXXXXXXXXXXXXXXXAPTLEGVPVRPDLKSRGLAKTDAKGPAV-DTPEASRP--DGADEAPAPTEEERPAPTAGSAVGDGQKKSSRGPRRKLRYNDADGGDLGGPR-----SRSLSGVLSGLADWLMPGMEGRRLAPEKTELILEVYPSAPMSPE-ARVPTVTRSAPPTPRGRRKASSVLRDGGWFYNGDSDYSTEEEVETNYDSEDEGFWADAGTTKPPRKIGGGGGTSILDRLRKLF 1545
            QPRSSAHTQQQWREXXXXEDALT AL KFK +  +GAA  KGA+A +  EGSCSNEDSTVCNSPWSSERG GG  S  GF G  LRASS+HG    R  S SGTA DNG  PEQ ++DA     RRGR  SH GD  GD  +R+W+WRSYSPPS+LSR +    +G        K+ A     Q ASGLP  DG    G+  NGKPP SP   VDS D             +LGESVVRSSGGYLPPRHPLA LQLSP S R A GSDS E G G        DP RE      XXXXXXXXXXXXX   APT             G +   A   AV DTPE  RP  D A E PAPTE            G        G RR+LRY+DA GG           SRS+SGV SGLADWLMPGME RR A  KTEL+LEVYPSAP SPE  + P VTRSAPPTPRGRR+ +SVLRDGGWFYNGDSDYSTEEEV+ +++SEDEGFWADA  +K P++IGGGGG SIL RL+KLF
Sbjct:  224 QPRSSAHTQQQWREXXXXEDALTCALGKFKKAGAEGAADVKGAEA-TGPEGSCSNEDSTVCNSPWSSERGGGG--SFGGFSGN-LRASSSHGEGGRRHYSSSGTAADNGTAPEQTMRDAMPLH-RRGRNSSHRGDLGGDEARREWSWRSYSPPSTLSRHRGRNTNGXXXXXXXAKKNAPAGFVQPASGLPGADG----GTATNGKPPPSPS-RVDSPDRVGGGSGKSGDSVLLGESVVRSSGGYLPPRHPLAALQLSPTSQRSAVGSDSEETGAGR-------DPGRENNG-XXXXXXXXXXXXXXXAARAPT------------EGSSAXXAAAVAVEDTPEV-RPAGDAAAEGPAPTEGXXXXXXXXXXXGKSAAPGD-GARRRLRYSDAGGGAXXXXXXXXSDSRSVSGVFSGLADWLMPGMERRRPA-VKTELLLEVYPSAPQSPERGQPPVVTRSAPPTPRGRRRPTSVLRDGGWFYNGDSDYSTEEEVDGSFESEDEGFWADAAESKAPQRIGGGGGDSILTRLKKLF 724
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15253.3911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVZ0_ECTSI1.530e-13058.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15253contigH-canaliculatus_F_contig15253:152..1702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_002680.1
Exons1
Model size1551
Cds size1551
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929263.6425717-CDS-H-canaliculatus_F_contig15253:151..17021622929263.6425717-CDS-H-canaliculatus_F_contig15253:151..1702Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15253 152..1702 +
1696845741.6901524-CDS-H-canaliculatus_F_contig15253:151..17021696845741.6901524-CDS-H-canaliculatus_F_contig15253:151..1702Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15253 152..1702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15253.3911.1prot_H-canaliculatus_F_contig15253.3911.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15253 152..1702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15253.3911.1

>prot_H-canaliculatus_F_contig15253.3911.1 ID=prot_H-canaliculatus_F_contig15253.3911.1|Name=mRNA_H-canaliculatus_F_contig15253.3911.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=517bp
QPRSSAHTQQQWREWREWEDALTYALDKFKTSETDGAAGTKGADAASAVE
GSCSNEDSTVCNSPWSSERGSGGGSSVAGFGGGALRASSAHGASDGRFRS
RSGTAPDNGAPPEQALKDAAACQGRRGRTPSHGDGSGDGEKRDWNWRSYS
PPSSLSRQKDGDSAEGGVKKRYASPRARQSASGLPSVDGVGSSGSNGNGK
PPPSPGGAVDSFDGAGGGGGGVLGESVVRSSGGYLPPRHPLATLQLSPAS
HRGAGGSDSGENGPGEGGAENLVDPPRETGADTKAEAEAEAEAGLEVGLE
APTLEGVPVRPDLKSRGLAKTDAKGPAVDTPEASRPDGADEAPAPTEEER
PAPTAGSAVGDGQKKSSRGPRRKLRYNDADGGDLGGPRSRSLSGVLSGLA
DWLMPGMEGRRLAPEKTELILEVYPSAPMSPEARVPTVTRSAPPTPRGRR
KASSVLRDGGWFYNGDSDYSTEEEVETNYDSEDEGFWADAGTTKPPRKIG
GGGGTSILDRLRKLFR*
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mRNA from alignment at H-canaliculatus_F_contig15253:152..1702+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15253.3911.1 ID=mRNA_H-canaliculatus_F_contig15253.3911.1|Name=mRNA_H-canaliculatus_F_contig15253.3911.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1551bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15253:152..1702+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCCCCGCAGCAGCGCGCACACCCAGCAGCAGTGGCGGGAGTGGCGGGA
GTGGGAAGATGCGCTGACCTACGCGTTGGACAAGTTCAAGACTAGCGAGA
CGGACGGCGCCGCGGGCACAAAGGGCGCCGACGCTGCGAGTGCCGTGGAA
GGGTCCTGCAGCAACGAAGACTCAACGGTGTGCAACTCCCCCTGGAGCAG
CGAGCGGGGGAGCGGGGGCGGCAGCAGCGTCGCCGGGTTCGGCGGAGGAG
CCCTCCGGGCGTCTTCGGCTCACGGGGCAAGCGATGGGCGCTTCCGCTCC
CGCTCGGGCACGGCGCCGGACAACGGAGCCCCACCAGAACAGGCGTTGAA
AGATGCCGCCGCGTGCCAGGGGAGGCGCGGGCGGACTCCTTCGCACGGGG
ACGGATCCGGGGACGGGGAGAAGCGGGATTGGAACTGGAGGTCGTACTCG
CCGCCGTCGTCGCTGTCGCGGCAGAAGGACGGTGACTCCGCCGAGGGGGG
CGTGAAGAAGAGGTACGCCTCTCCCCGTGCCCGGCAGTCCGCGAGCGGGC
TCCCGAGCGTTGACGGTGTTGGCAGCAGCGGTAGCAACGGTAACGGCAAG
CCCCCTCCATCGCCCGGCGGGGCCGTAGACTCTTTCGACGGGGCCGGAGG
AGGAGGAGGAGGTGTGCTGGGGGAGTCCGTGGTGCGCTCTAGCGGGGGTT
ACCTGCCGCCGAGACACCCACTCGCGACCCTTCAGCTGTCACCCGCGAGT
CATAGAGGCGCGGGTGGGTCCGACTCCGGAGAAAACGGCCCGGGCGAGGG
CGGTGCGGAGAATCTGGTGGACCCACCCCGGGAAACGGGAGCAGATACGA
AAGCGGAAGCGGAAGCGGAAGCGGAAGCGGGGTTGGAAGTGGGGTTGGAA
GCGCCGACCCTCGAGGGAGTCCCGGTCCGCCCGGACCTGAAGAGCAGGGG
CTTGGCAAAGACCGACGCCAAGGGGCCGGCGGTCGACACCCCCGAAGCGT
CGAGACCGGACGGAGCCGACGAGGCACCCGCCCCCACGGAGGAGGAGCGG
CCCGCACCGACCGCGGGGAGTGCGGTAGGGGACGGGCAAAAGAAGTCCTC
GAGAGGCCCGCGCCGAAAGCTGAGGTACAACGACGCGGACGGCGGGGACC
TAGGCGGGCCCCGCTCTCGATCGCTCTCCGGAGTCCTGTCGGGGCTGGCG
GACTGGTTGATGCCCGGCATGGAGGGGCGCCGGCTGGCCCCGGAGAAGAC
GGAGCTCATCCTGGAGGTTTACCCGAGCGCGCCGATGTCTCCCGAGGCCC
GGGTGCCGACGGTGACGAGGTCCGCGCCCCCCACGCCCAGAGGTCGGAGG
AAAGCGTCTTCGGTGCTGAGAGACGGCGGGTGGTTCTACAACGGGGACTC
GGACTATTCCACCGAAGAGGAGGTGGAGACGAACTACGACAGCGAAGACG
AGGGCTTCTGGGCGGACGCGGGGACGACCAAGCCGCCAAGGAAAATAGGG
GGGGGGGGTGGAACCAGCATCTTGGATCGCCTTAGAAAACTCTTCAGATG
A
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15253:152..1702+

>mRNA_H-canaliculatus_F_contig15253.3911.1 ID=mRNA_H-canaliculatus_F_contig15253.3911.1|Name=mRNA_H-canaliculatus_F_contig15253.3911.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3102bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15253:152..1702+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCCCCGCAGCAGCGCGCACACCCAGCAGCAGTGGCGGGAGTGGCGGGA
GTGGGAAGATGCGCTGACCTACGCGTTGGACAAGTTCAAGACTAGCGAGA
CGGACGGCGCCGCGGGCACAAAGGGCGCCGACGCTGCGAGTGCCGTGGAA
GGGTCCTGCAGCAACGAAGACTCAACGGTGTGCAACTCCCCCTGGAGCAG
CGAGCGGGGGAGCGGGGGCGGCAGCAGCGTCGCCGGGTTCGGCGGAGGAG
CCCTCCGGGCGTCTTCGGCTCACGGGGCAAGCGATGGGCGCTTCCGCTCC
CGCTCGGGCACGGCGCCGGACAACGGAGCCCCACCAGAACAGGCGTTGAA
AGATGCCGCCGCGTGCCAGGGGAGGCGCGGGCGGACTCCTTCGCACGGGG
ACGGATCCGGGGACGGGGAGAAGCGGGATTGGAACTGGAGGTCGTACTCG
CCGCCGTCGTCGCTGTCGCGGCAGAAGGACGGTGACTCCGCCGAGGGGGG
CGTGAAGAAGAGGTACGCCTCTCCCCGTGCCCGGCAGTCCGCGAGCGGGC
TCCCGAGCGTTGACGGTGTTGGCAGCAGCGGTAGCAACGGTAACGGCAAG
CCCCCTCCATCGCCCGGCGGGGCCGTAGACTCTTTCGACGGGGCCGGAGG
AGGAGGAGGAGGTGTGCTGGGGGAGTCCGTGGTGCGCTCTAGCGGGGGTT
ACCTGCCGCCGAGACACCCACTCGCGACCCTTCAGCTGTCACCCGCGAGT
CATAGAGGCGCGGGTGGGTCCGACTCCGGAGAAAACGGCCCGGGCGAGGG
CGGTGCGGAGAATCTGGTGGACCCACCCCGGGAAACGGGAGCAGATACGA
AAGCGGAAGCGGAAGCGGAAGCGGAAGCGGGGTTGGAAGTGGGGTTGGAA
GCGCCGACCCTCGAGGGAGTCCCGGTCCGCCCGGACCTGAAGAGCAGGGG
CTTGGCAAAGACCGACGCCAAGGGGCCGGCGGTCGACACCCCCGAAGCGT
CGAGACCGGACGGAGCCGACGAGGCACCCGCCCCCACGGAGGAGGAGCGG
CCCGCACCGACCGCGGGGAGTGCGGTAGGGGACGGGCAAAAGAAGTCCTC
GAGAGGCCCGCGCCGAAAGCTGAGGTACAACGACGCGGACGGCGGGGACC
TAGGCGGGCCCCGCTCTCGATCGCTCTCCGGAGTCCTGTCGGGGCTGGCG
GACTGGTTGATGCCCGGCATGGAGGGGCGCCGGCTGGCCCCGGAGAAGAC
GGAGCTCATCCTGGAGGTTTACCCGAGCGCGCCGATGTCTCCCGAGGCCC
GGGTGCCGACGGTGACGAGGTCCGCGCCCCCCACGCCCAGAGGTCGGAGG
AAAGCGTCTTCGGTGCTGAGAGACGGCGGGTGGTTCTACAACGGGGACTC
GGACTATTCCACCGAAGAGGAGGTGGAGACGAACTACGACAGCGAAGACG
AGGGCTTCTGGGCGGACGCGGGGACGACCAAGCCGCCAAGGAAAATAGGG
GGGGGGGGTGGAACCAGCATCTTGGATCGCCTTAGAAAACTCTTCAGATG
ACAGCCCCGCAGCAGCGCGCACACCCAGCAGCAGTGGCGGGAGTGGCGGG
AGTGGGAAGATGCGCTGACCTACGCGTTGGACAAGTTCAAGACTAGCGAG
ACGGACGGCGCCGCGGGCACAAAGGGCGCCGACGCTGCGAGTGCCGTGGA
AGGGTCCTGCAGCAACGAAGACTCAACGGTGTGCAACTCCCCCTGGAGCA
GCGAGCGGGGGAGCGGGGGCGGCAGCAGCGTCGCCGGGTTCGGCGGAGGA
GCCCTCCGGGCGTCTTCGGCTCACGGGGCAAGCGATGGGCGCTTCCGCTC
CCGCTCGGGCACGGCGCCGGACAACGGAGCCCCACCAGAACAGGCGTTGA
AAGATGCCGCCGCGTGCCAGGGGAGGCGCGGGCGGACTCCTTCGCACGGG
GACGGATCCGGGGACGGGGAGAAGCGGGATTGGAACTGGAGGTCGTACTC
GCCGCCGTCGTCGCTGTCGCGGCAGAAGGACGGTGACTCCGCCGAGGGGG
GCGTGAAGAAGAGGTACGCCTCTCCCCGTGCCCGGCAGTCCGCGAGCGGG
CTCCCGAGCGTTGACGGTGTTGGCAGCAGCGGTAGCAACGGTAACGGCAA
GCCCCCTCCATCGCCCGGCGGGGCCGTAGACTCTTTCGACGGGGCCGGAG
GAGGAGGAGGAGGTGTGCTGGGGGAGTCCGTGGTGCGCTCTAGCGGGGGT
TACCTGCCGCCGAGACACCCACTCGCGACCCTTCAGCTGTCACCCGCGAG
TCATAGAGGCGCGGGTGGGTCCGACTCCGGAGAAAACGGCCCGGGCGAGG
GCGGTGCGGAGAATCTGGTGGACCCACCCCGGGAAACGGGAGCAGATACG
AAAGCGGAAGCGGAAGCGGAAGCGGAAGCGGGGTTGGAAGTGGGGTTGGA
AGCGCCGACCCTCGAGGGAGTCCCGGTCCGCCCGGACCTGAAGAGCAGGG
GCTTGGCAAAGACCGACGCCAAGGGGCCGGCGGTCGACACCCCCGAAGCG
TCGAGACCGGACGGAGCCGACGAGGCACCCGCCCCCACGGAGGAGGAGCG
GCCCGCACCGACCGCGGGGAGTGCGGTAGGGGACGGGCAAAAGAAGTCCT
CGAGAGGCCCGCGCCGAAAGCTGAGGTACAACGACGCGGACGGCGGGGAC
CTAGGCGGGCCCCGCTCTCGATCGCTCTCCGGAGTCCTGTCGGGGCTGGC
GGACTGGTTGATGCCCGGCATGGAGGGGCGCCGGCTGGCCCCGGAGAAGA
CGGAGCTCATCCTGGAGGTTTACCCGAGCGCGCCGATGTCTCCCGAGGCC
CGGGTGCCGACGGTGACGAGGTCCGCGCCCCCCACGCCCAGAGGTCGGAG
GAAAGCGTCTTCGGTGCTGAGAGACGGCGGGTGGTTCTACAACGGGGACT
CGGACTATTCCACCGAAGAGGAGGTGGAGACGAACTACGACAGCGAAGAC
GAGGGCTTCTGGGCGGACGCGGGGACGACCAAGCCGCCAAGGAAAATAGG
GGGGGGGGGTGGAACCAGCATCTTGGATCGCCTTAGAAAACTCTTCAGAT
GA
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