mRNA_H-canaliculatus_F_contig15248.3907.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15248.3907.1
Unique NamemRNA_H-canaliculatus_F_contig15248.3907.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15248.3907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15248contigH-canaliculatus_F_contig15248:1472..2005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size536
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929263.0475893-CDS-H-canaliculatus_F_contig15248:1471..20051622929263.0475893-CDS-H-canaliculatus_F_contig15248:1471..2005Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15248 1472..2005 +
1696845741.419932-CDS-H-canaliculatus_F_contig15248:1471..20051696845741.419932-CDS-H-canaliculatus_F_contig15248:1471..2005Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15248 1472..2005 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15248.3907.1prot_H-canaliculatus_F_contig15248.3907.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15248 1472..2005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15248.3907.1

>prot_H-canaliculatus_F_contig15248.3907.1 ID=prot_H-canaliculatus_F_contig15248.3907.1|Name=mRNA_H-canaliculatus_F_contig15248.3907.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=178bp
NLSLREVHRTRKSGPCARMRFALHATDVTEPRVLVRAMGRSKRRWVLSPA
GTSRHSARELSMRDRQVDGSSTDPEMGALYRPYDTPDKVRLPYKAVPNPD
LGTTLRFFKPSQGVAKDPRGVPPLAKGSSPPPAKACSSLTLRNPFGPPPP
QVCLQRPKDAPMQSSRGAIHELRLDPPR
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mRNA from alignment at H-canaliculatus_F_contig15248:1472..2005+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15248.3907.1 ID=mRNA_H-canaliculatus_F_contig15248.3907.1|Name=mRNA_H-canaliculatus_F_contig15248.3907.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=534bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15248:1472..2005+ (Hapterophycus canaliculatus Oshoro5f female)
AACCTCTCGCTTCGAGAGGTCCATCGAACGAGGAAAAGCGGACCGTGTGC
GCGCATGCGATTCGCCCTTCATGCTACCGATGTCACGGAGCCCCGTGTCT
TGGTGCGAGCGATGGGGCGCAGCAAGCGGCGGTGGGTTCTCTCTCCGGCG
GGAACATCGCGTCACAGCGCGAGGGAGTTGTCAATGAGAGACAGACAGGT
GGACGGGAGCTCCACTGATCCAGAGATGGGTGCCCTGTATCGTCCTTACG
ACACCCCAGATAAGGTACGACTGCCCTACAAGGCCGTTCCAAATCCCGAC
CTTGGAACCACCCTGAGATTTTTTAAACCTTCCCAAGGTGTTGCCAAAGA
TCCTAGGGGCGTTCCGCCTCTAGCTAAGGGGAGCTCTCCTCCACCTGCGA
AGGCCTGCTCAAGCTTAACTCTTCGCAACCCTTTCGGGCCGCCGCCACCT
CAAGTCTGCCTTCAACGGCCCAAAGACGCACCTATGCAAAGTTCCCGCGG
CGCGATCCACGAACTGCGGCTCGACCCTCCCCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15248:1472..2005+

>mRNA_H-canaliculatus_F_contig15248.3907.1 ID=mRNA_H-canaliculatus_F_contig15248.3907.1|Name=mRNA_H-canaliculatus_F_contig15248.3907.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1068bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15248:1472..2005+ (Hapterophycus canaliculatus Oshoro5f female)
AACCTCTCGCTTCGAGAGGTCCATCGAACGAGGAAAAGCGGACCGTGTGC
GCGCATGCGATTCGCCCTTCATGCTACCGATGTCACGGAGCCCCGTGTCT
TGGTGCGAGCGATGGGGCGCAGCAAGCGGCGGTGGGTTCTCTCTCCGGCG
GGAACATCGCGTCACAGCGCGAGGGAGTTGTCAATGAGAGACAGACAGGT
GGACGGGAGCTCCACTGATCCAGAGATGGGTGCCCTGTATCGTCCTTACG
ACACCCCAGATAAGGTACGACTGCCCTACAAGGCCGTTCCAAATCCCGAC
CTTGGAACCACCCTGAGATTTTTTAAACCTTCCCAAGGTGTTGCCAAAGA
TCCTAGGGGCGTTCCGCCTCTAGCTAAGGGGAGCTCTCCTCCACCTGCGA
AGGCCTGCTCAAGCTTAACTCTTCGCAACCCTTTCGGGCCGCCGCCACCT
CAAGTCTGCCTTCAACGGCCCAAAGACGCACCTATGCAAAGTTCCCGCGG
CGCGATCCACGAACTGCGGCTCGACCCTCCCCGCAACCTCTCGCTTCGAG
AGGTCCATCGAACGAGGAAAAGCGGACCGTGTGCGCGCATGCGATTCGCC
CTTCATGCTACCGATGTCACGGAGCCCCGTGTCTTGGTGCGAGCGATGGG
GCGCAGCAAGCGGCGGTGGGTTCTCTCTCCGGCGGGAACATCGCGTCACA
GCGCGAGGGAGTTGTCAATGAGAGACAGACAGGTGGACGGGAGCTCCACT
GATCCAGAGATGGGTGCCCTGTATCGTCCTTACGACACCCCAGATAAGGT
ACGACTGCCCTACAAGGCCGTTCCAAATCCCGACCTTGGAACCACCCTGA
GATTTTTTAAACCTTCCCAAGGTGTTGCCAAAGATCCTAGGGGCGTTCCG
CCTCTAGCTAAGGGGAGCTCTCCTCCACCTGCGAAGGCCTGCTCAAGCTT
AACTCTTCGCAACCCTTTCGGGCCGCCGCCACCTCAAGTCTGCCTTCAAC
GGCCCAAAGACGCACCTATGCAAAGTTCCCGCGGCGCGATCCACGAACTG
CGGCTCGACCCTCCCCGC
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