mRNA_H-canaliculatus_F_contig15248.3906.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15248.3906.1
Unique NamemRNA_H-canaliculatus_F_contig15248.3906.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15248.3906.1 vs. uniprot
Match: A0A6H5JNV5_9PHAE (BTB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV5_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.080e-13
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   19 HRSPRRQGGQVPDLVGKAIVQVTCGAYHTVSLDAEGRVYPFG 144
            HR    QGGQVPDL GK I+QV CG+YHTVSLD EGRVYPFG
Sbjct:   82 HRESTWQGGQVPDLAGKRIIQVACGSYHTVSLDDEGRVYPFG 123
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BLAST of mRNA_H-canaliculatus_F_contig15248.3906.1 vs. uniprot
Match: D7G3F9_ECTSI (BTB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F9_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.510e-12
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   19 HRSPRRQGGQVPDLVGKAIVQVTCGAYHTVSLDAEGRVYPFG 144
            HR    QGGQVPDL G  I+QV CG+YHT+SLD EGRVYPFG
Sbjct:  300 HRESTWQGGQVPDLAGLRIIQVACGSYHTISLDDEGRVYPFG 341
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BLAST of mRNA_H-canaliculatus_F_contig15248.3906.1 vs. uniprot
Match: A0A7S3XQJ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQJ6_HETAK)

HSP 1 Score: 51.2 bits (121), Expect = 3.650e-6
Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:   19 HRSPRRQGGQVPDLVGKAIVQVTCGAYHTVSLDAEGRVYPFG 144
            HR    +   V  +  +A+VQV CG YHTV+L AEGRV+PFG
Sbjct:  366 HRENAHRPALVQGIADQAVVQVACGCYHTVTLTAEGRVFPFG 407
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15248.3906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JNV5_9PHAE1.080e-1376.19BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G3F9_ECTSI1.510e-1271.43BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3XQJ6_HETAK3.650e-652.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15248contigH-canaliculatus_F_contig15248:313..456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue1.9e-10
Seed eggNOG ortholog2880.D7G3F9
KEGG koko:K11494
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929263.0969682-CDS-H-canaliculatus_F_contig15248:312..4561622929263.0969682-CDS-H-canaliculatus_F_contig15248:312..456Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15248 313..456 +
1696845741.4356766-CDS-H-canaliculatus_F_contig15248:312..4561696845741.4356766-CDS-H-canaliculatus_F_contig15248:312..456Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15248 313..456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15248.3906.1prot_H-canaliculatus_F_contig15248.3906.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15248 313..456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15248.3906.1

>prot_H-canaliculatus_F_contig15248.3906.1 ID=prot_H-canaliculatus_F_contig15248.3906.1|Name=mRNA_H-canaliculatus_F_contig15248.3906.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=48bp
LAWPLLHRSPRRQGGQVPDLVGKAIVQVTCGAYHTVSLDAEGRVYPFG
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mRNA from alignment at H-canaliculatus_F_contig15248:313..456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15248.3906.1 ID=mRNA_H-canaliculatus_F_contig15248.3906.1|Name=mRNA_H-canaliculatus_F_contig15248.3906.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=144bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15248:313..456+ (Hapterophycus canaliculatus Oshoro5f female)
CTTGCCTGGCCCCTACTTCACCGCTCACCGCGCAGGCAAGGCGGGCAGGT
GCCCGATCTTGTCGGCAAGGCTATCGTCCAGGTCACGTGCGGCGCTTATC
ACACCGTTTCGCTCGACGCCGAGGGTCGAGTCTACCCTTTCGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15248:313..456+

>mRNA_H-canaliculatus_F_contig15248.3906.1 ID=mRNA_H-canaliculatus_F_contig15248.3906.1|Name=mRNA_H-canaliculatus_F_contig15248.3906.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=288bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15248:313..456+ (Hapterophycus canaliculatus Oshoro5f female)
CTTGCCTGGCCCCTACTTCACCGCTCACCGCGCAGGCAAGGCGGGCAGGT
GCCCGATCTTGTCGGCAAGGCTATCGTCCAGGTCACGTGCGGCGCTTATC
ACACCGTTTCGCTCGACGCCGAGGGTCGAGTCTACCCTTTCGGACTTGCC
TGGCCCCTACTTCACCGCTCACCGCGCAGGCAAGGCGGGCAGGTGCCCGA
TCTTGTCGGCAAGGCTATCGTCCAGGTCACGTGCGGCGCTTATCACACCG
TTTCGCTCGACGCCGAGGGTCGAGTCTACCCTTTCGGA
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