mRNA_H-canaliculatus_F_contig15240.3902.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15240.3902.1
Unique NamemRNA_H-canaliculatus_F_contig15240.3902.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Match: D8LFV7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFV7_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 5.530e-33
Identity = 72/88 (81.82%), Postives = 75/88 (85.23%), Query Frame = 1
Query:   10 DRRDYDMHRLAREEKLKGKKLRGKRKRKEVAREKAPGQNFRVDVADERFAAVLEGDTRFGIDRTDSSFKDTEGMRSILVERSRRKDKK 273
            DRRDYDMHRLAREEKLKGK           AREKAPGQ+FRVDVADERFAA+LEGDTRFGIDRTDSSFKDTEGMRSIL ER+RRK KK
Sbjct:  766 DRRDYDMHRLAREEKLKGKXXXXXXXXXXAAREKAPGQDFRVDVADERFAALLEGDTRFGIDRTDSSFKDTEGMRSILEERTRRKGKK 853          
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Match: A0A835YR83_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR83_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 8.440e-19
Identity = 47/62 (75.81%), Postives = 54/62 (87.10%), Query Frame = 1
Query:    1 DEEDRRDYDMHRLAREEKLKGKKLRGKRKRKEVAREKAPGQNFRVDVADERFAAVLEGDTRF 186
            DEED R++DM  L REEK+KGKKLRGKRKRKE AR++APGQ F VDV D+RFAAVLEGD+RF
Sbjct:  617 DEEDERNFDMRALMREEKVKGKKLRGKRKRKEEARDRAPGQGFNVDVKDDRFAAVLEGDSRF 678          
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Match: A0A1Z5KDP7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDP7_FISSO)

HSP 1 Score: 87.0 bits (214), Expect = 5.370e-18
Identity = 54/93 (58.06%), Postives = 67/93 (72.04%), Query Frame = 1
Query:    1 DEEDRRDYDMHRLAREEKLKGKKLRGKRKRKEVAREK-APGQNFRVDVADERFAAVLEG-DTRFGIDRTDSSFKDTEGMRSILVERSRRKDKK 273
            D+++ +DY+M  L R E+ KGKKL G RKRKE  R K   G +F+VDV DERF AVL+G D RFGIDRTD +FK+T  MR IL E+SRR+  K
Sbjct:  638 DDDEHKDYNMKDLERLERNKGKKLTGSRKRKEELRAKNTVGTDFKVDVEDERFKAVLDGQDGRFGIDRTDPNFKETPAMREILAEQSRRRQAK 730          
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Match: A0A7S1FMP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMP2_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.580e-17
Identity = 50/89 (56.18%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    4 EEDRRDYDMHRLAREEKLKGKKLRGKR-KRKEVAREKAPGQNFRVDVADERFAAVLEG-DTRFGIDRTDSSFKDTEGMRSILVERSRRK 264
            EED RDYDM  L + E+   K LRGKR         +  G  F+VDVAD+RFAAVL+G D RFGI RTD +FKDTEGMR +L E++RR+
Sbjct:   14 EEDARDYDMRGLRKAERDAAKALRGKRLXXXXXXXXEVRGGEFQVDVADDRFAAVLDGEDARFGITRTDPAFKDTEGMRKVLAEQNRRR 102          
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Match: A0A1E7F590_9STRA (NUC153 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F590_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.070e-15
Identity = 52/95 (54.74%), Postives = 68/95 (71.58%), Query Frame = 1
Query:    1 DEEDRRDYDMHRLAREEKLKGKKLRGKRKRKE--VAREKAPGQNFRVDVADERFAAVLEG-DTRFGIDRTDSSFKDTEGMRSILVERS-RRKDKK 273
            ++E+ RDYD+  + R EK KGKKL G RKRKE  +A +   G +F+VD  D RF AVL+G D RFGID+TD SFKDT  MR I+ E++ RRK+K+
Sbjct:  636 EDEEARDYDIRGIQRMEKNKGKKLTGSRKRKEAKIAAD-VSGSSFKVDTKDNRFQAVLDGSDARFGIDKTDPSFKDTSAMREIISEQNMRRKNKR 729          
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Match: B7GAK3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GAK3_PHATC)

HSP 1 Score: 79.7 bits (195), Expect = 1.980e-15
Identity = 53/89 (59.55%), Postives = 60/89 (67.42%), Query Frame = 1
Query:   16 RDYDMHRLAREEKLKGKKLRGKRKRKEVA-REKAPGQNFRVDVADERFAAVLEG-DTRFGIDRTDSSFKDTEGMRSILVERS-RRKDKK 273
            RDYDM  L R EK K KK  G RKR EVA      G  F VD +D+RF AVL+G D RFGIDRTD SFK+T  MR IL E++ RRKDK+
Sbjct:  566 RDYDMRGLQRLEKNKDKKFTGSRKRNEVALAANVTGTEFHVDTSDQRFKAVLDGTDDRFGIDRTDPSFKETPAMREILKEQTLRRKDKR 654          
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Match: I2CPY8_NANGC (NUC153 domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPY8_NANGC)

HSP 1 Score: 73.6 bits (179), Expect = 2.900e-14
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 DEEDRRDYDMHRLAREEKLKGKKLRGKRKRKEVAREKA-PGQNFRVDVADERFAAVLEGDTRFGIDRTDSSFKDTEGMRSILVERSRRK 264
            +EE RRD+DM  L R EKLKGK               A PGQ+FRVD +D RFAA+ EGD R+GI+ T   +K+TEGM  IL E+S+R+
Sbjct:   78 EEEGRRDFDMRALERTEKLKGKXXXXXXXXXXXXXXXAVPGQDFRVDTSDSRFAALFEGDARYGIETTSKEYKETEGMVRILREQSKRR 166          
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Match: A0A4D9D496_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D496_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.570e-13
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 DEEDRRDYDMHRLAREEKLKGKKLRGKRKRKEVAREKA-PGQNFRVDVADERFAAVLEGDTRFGIDRTDSSFKDTEGMRSILVERSRRK 264
            +EE RRD+DM  L R E+LKGKK              A PGQ+FRVD +D RFAA+ EGD R+GI+ T   +K+TEGM  +L E+S+R+
Sbjct:  689 EEEGRRDFDMRALERTERLKGKKXXXXXXXXXXXXXXAVPGQDFRVDTSDSRFAALFEGDARYGIETTSKEYKETEGMVRVLREQSKRR 777          
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Match: W2PT68_PHYPN (NUC153 domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PT68_PHYPN)

HSP 1 Score: 59.3 bits (142), Expect = 2.970e-8
Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = 1
Query:    4 EEDRRDYDMHRLAREEKLKGKKLRGKRKRKEV---AREKAPG---QNFRVDVADERFAAVLEGDTRFGIDRTDSSFKDTEGMRSILVERSRRKD 267
            E+D R++DM ++A++EK+K   L+GKR+ KE+   A+ KA G   + F  D AD RF+A+    ++F +D TD  FK TE  ++I  ER +R D
Sbjct:  575 EQDERNFDMKKIAKQEKVKS--LKGKRRAKEMKKLAKHKASGGLQEGFEFDAADPRFSALYAKGSQFQLDPTDPKFKKTEATQAIFKERRQRYD 666          
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Match: A0A6A4VZN5_AMPAM (ESF1 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VZN5_AMPAM)

HSP 1 Score: 57.4 bits (137), Expect = 1.220e-7
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 DEEDRRDYDMHRLAREEKLK--GKKLRGKRKRKEVAREKAPGQNFRVDVADERFAAVLEGDTRFGIDRTDSSFKDTEGMRSILVERSRR 261
            +E++RR +D  ++ ++E     GKK + K+ RK  A EKAP  +F+VDVAD RF  + E    F +D +D+ FK TEGM+ ++ E+ RR
Sbjct:  173 EEDNRRHFDFKQIVKDETATAAGKKKKWKKXRK-PAEEKAPADDFQVDVADPRFTKMFES-AEFNVDPSDARFKPTEGMKRLVGEKQRR 259          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D8LFV7_ECTSI5.530e-3381.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YR83_9STRA8.440e-1975.81Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A1Z5KDP7_FISSO5.370e-1858.06Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S1FMP2_9STRA2.580e-1756.18Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A1E7F590_9STRA1.070e-1554.74NUC153 domain-containing protein n=1 Tax=Fragilari... [more]
B7GAK3_PHATC1.980e-1559.55Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
I2CPY8_NANGC2.900e-1450.56NUC153 domain-containing protein (Fragment) n=1 Ta... [more]
A0A4D9D496_9STRA1.570e-1349.44Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W2PT68_PHYPN2.970e-841.49NUC153 domain-containing protein n=11 Tax=Phytopht... [more]
A0A6A4VZN5_AMPAM1.220e-741.57ESF1 n=2 Tax=Amphibalanus amphitrite TaxID=1232801... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15240contigH-canaliculatus_F_contig15240:1121..2063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.4
Seed ortholog evalue7.9e-25
Seed eggNOG ortholog2880.D8LFV7
Preferred nameESF1
KEGG koko:K22197
KEGG Pathwayko05225,map05225
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0031974,GO:0031981,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.rRNA processing
EggNOG OGsCOG5638@1,KOG2318@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15240.3902.1prot_H-canaliculatus_F_contig15240.3902.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15240 1148..2063 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929262.8180134-UTR-H-canaliculatus_F_contig15240:1120..11471622929262.8180134-UTR-H-canaliculatus_F_contig15240:1120..1147Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15240 1121..1147 +
1696845741.3236196-UTR-H-canaliculatus_F_contig15240:1120..11471696845741.3236196-UTR-H-canaliculatus_F_contig15240:1120..1147Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15240 1121..1147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929262.8361802-CDS-H-canaliculatus_F_contig15240:1147..13361622929262.8361802-CDS-H-canaliculatus_F_contig15240:1147..1336Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15240 1148..1336 +
1696845741.3350742-CDS-H-canaliculatus_F_contig15240:1147..13361696845741.3350742-CDS-H-canaliculatus_F_contig15240:1147..1336Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15240 1148..1336 +
1622929262.8504274-CDS-H-canaliculatus_F_contig15240:2006..20631622929262.8504274-CDS-H-canaliculatus_F_contig15240:2006..2063Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15240 2007..2063 +
1696845741.343629-CDS-H-canaliculatus_F_contig15240:2006..20631696845741.343629-CDS-H-canaliculatus_F_contig15240:2006..2063Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15240 2007..2063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15240.3902.1

>prot_H-canaliculatus_F_contig15240.3902.1 ID=prot_H-canaliculatus_F_contig15240.3902.1|Name=mRNA_H-canaliculatus_F_contig15240.3902.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=82bp
MHRLAREEKLKGKKLRGKRKRKEVAREKAPGQNFRVDVADERFAAVLEGD
TRFGIDRTDSSFKDTEGMRSILVERSRRKDKK
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mRNA from alignment at H-canaliculatus_F_contig15240:1121..2063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15240.3902.1 ID=mRNA_H-canaliculatus_F_contig15240.3902.1|Name=mRNA_H-canaliculatus_F_contig15240.3902.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=943bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15240:1121..2063+ (Hapterophycus canaliculatus Oshoro5f female)
GACGAGGAGGACAGGAGGGACTACGACATGCACCGCCTGGCCCGCGAGGA GAAGCTGAAGGGCAAGAAGCTCCGCGGGAAGCGGAAGCGGAAGGAGGTCG CCAGGGAAAAGGCTCCCGGGCAAAACTTCAGGGTCGACGTGGCGGACGAG CGGTTCGCCGCCGTGCTGGAGGGCGACACACGGTTCGGCATCGACCGGAC GGATTCCAGCTTCAAGGTGAGAGTCGAAAGCCGGCGGTGGACCCGAGCAA GGGGGAAGTGGGACGTTCATGCTCGCGTCCGTGGCGACGGTCTGTCCTCG AGCGAGCACGGGTACCCGCGGAGGCCACGGGAGAGGGATGGAGACGCTCG CGGACTGATTTGGTCGAGGTTATGTGTCTGTGTGTGTGTCTGTCTGTCTA TCCTTCGGCAGTCTGTGGACACAATCTGCATGCTGTTTTGGCTCTCTTTT AGTATCGGAGTCCACCATGGTAGTCGTAGAGGAGTTGCGGGATGTAGCCT TGCCCAAGATTTCGGCAGTCTCATAAGAGTGGTTCATGCTCGCCTGTTTT TCAAGATCGAGCGAAAGCTCCTCGTTGATTGGCCTTGATGCCCCTGGCGT GCACGTGTCCGTTGCGCTTTTTCTTGTGCAAGCACATCTCTCTGCGGTGA CTCGCTCGGCGATCCGTTTGGATTGACAAGGCCTCGCTCGCGGAGGAAAC CCAAACCCTGCCTGTCTCACGTGCATGTGAGAATCCGTCTGTCCGTACCC CCTCATCGTCGCTGCCACCGTACACCCGACACCATTACCGACGATCGCGA GCATGCCTTCCGCCGCCCCACGTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTTGCTATGGGCCTCAGGACACGGAGGGAAT GCGCTCAATCCTGGTAGAGCGCAGCCGCCGCAAGGACAAGAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15240:1121..2063+

>mRNA_H-canaliculatus_F_contig15240.3902.1 ID=mRNA_H-canaliculatus_F_contig15240.3902.1|Name=mRNA_H-canaliculatus_F_contig15240.3902.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=492bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15240:1121..2063+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCACCGCCTGGCCCGCGAGGAGAAGCTGAAGGGCAAGAAGCTCCGCGG
GAAGCGGAAGCGGAAGGAGGTCGCCAGGGAAAAGGCTCCCGGGCAAAACT
TCAGGGTCGACGTGGCGGACGAGCGGTTCGCCGCCGTGCTGGAGGGCGAC
ACACGGTTCGGCATCGACCGGACGGATTCCAGCTTCAAGATGCACCGCCT
GGCCCGCGAGGAGAAGCTGAAGGGCAAGAAGCTCCGCGGGAAGCGGAAGC
GGAAGGAGGTCGCCAGGGAAAAGGCTCCCGGGCAAAACTTCAGGGTCGAC
GTGGCGGACGAGCGGTTCGCCGCCGTGCTGGAGGGCGACACACGGTTCGG
CATCGACCGGACGGATTCCAGCTTCAAGGACACGGAGGGAATGCGCTCAA
TCCTGGTAGAGCGCAGCCGCCGCAAGGACAAGAAGGACACGGAGGGAATG
CGCTCAATCCTGGTAGAGCGCAGCCGCCGCAAGGACAAGAAG
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