mRNA_H-canaliculatus_F_contig15240.3902.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Match: D8LFV7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFV7_ECTSI) HSP 1 Score: 129 bits (325), Expect = 5.530e-33 Identity = 72/88 (81.82%), Postives = 75/88 (85.23%), Query Frame = 1
Query: 10 DRRDYDMHRLAREEKLKGKKLRGKRKRKEVAREKAPGQNFRVDVADERFAAVLEGDTRFGIDRTDSSFKDTEGMRSILVERSRRKDKK 273
DRRDYDMHRLAREEKLKGK AREKAPGQ+FRVDVADERFAA+LEGDTRFGIDRTDSSFKDTEGMRSIL ER+RRK KK
Sbjct: 766 DRRDYDMHRLAREEKLKGKXXXXXXXXXXAAREKAPGQDFRVDVADERFAALLEGDTRFGIDRTDSSFKDTEGMRSILEERTRRKGKK 853
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Match: A0A835YR83_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR83_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 8.440e-19 Identity = 47/62 (75.81%), Postives = 54/62 (87.10%), Query Frame = 1
Query: 1 DEEDRRDYDMHRLAREEKLKGKKLRGKRKRKEVAREKAPGQNFRVDVADERFAAVLEGDTRF 186
DEED R++DM L REEK+KGKKLRGKRKRKE AR++APGQ F VDV D+RFAAVLEGD+RF
Sbjct: 617 DEEDERNFDMRALMREEKVKGKKLRGKRKRKEEARDRAPGQGFNVDVKDDRFAAVLEGDSRF 678
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Match: A0A1Z5KDP7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDP7_FISSO) HSP 1 Score: 87.0 bits (214), Expect = 5.370e-18 Identity = 54/93 (58.06%), Postives = 67/93 (72.04%), Query Frame = 1
Query: 1 DEEDRRDYDMHRLAREEKLKGKKLRGKRKRKEVAREK-APGQNFRVDVADERFAAVLEG-DTRFGIDRTDSSFKDTEGMRSILVERSRRKDKK 273
D+++ +DY+M L R E+ KGKKL G RKRKE R K G +F+VDV DERF AVL+G D RFGIDRTD +FK+T MR IL E+SRR+ K
Sbjct: 638 DDDEHKDYNMKDLERLERNKGKKLTGSRKRKEELRAKNTVGTDFKVDVEDERFKAVLDGQDGRFGIDRTDPNFKETPAMREILAEQSRRRQAK 730
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Match: A0A7S1FMP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMP2_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 2.580e-17 Identity = 50/89 (56.18%), Postives = 61/89 (68.54%), Query Frame = 1
Query: 4 EEDRRDYDMHRLAREEKLKGKKLRGKR-KRKEVAREKAPGQNFRVDVADERFAAVLEG-DTRFGIDRTDSSFKDTEGMRSILVERSRRK 264
EED RDYDM L + E+ K LRGKR + G F+VDVAD+RFAAVL+G D RFGI RTD +FKDTEGMR +L E++RR+
Sbjct: 14 EEDARDYDMRGLRKAERDAAKALRGKRLXXXXXXXXEVRGGEFQVDVADDRFAAVLDGEDARFGITRTDPAFKDTEGMRKVLAEQNRRR 102
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Match: A0A1E7F590_9STRA (NUC153 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F590_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.070e-15 Identity = 52/95 (54.74%), Postives = 68/95 (71.58%), Query Frame = 1
Query: 1 DEEDRRDYDMHRLAREEKLKGKKLRGKRKRKE--VAREKAPGQNFRVDVADERFAAVLEG-DTRFGIDRTDSSFKDTEGMRSILVERS-RRKDKK 273
++E+ RDYD+ + R EK KGKKL G RKRKE +A + G +F+VD D RF AVL+G D RFGID+TD SFKDT MR I+ E++ RRK+K+
Sbjct: 636 EDEEARDYDIRGIQRMEKNKGKKLTGSRKRKEAKIAAD-VSGSSFKVDTKDNRFQAVLDGSDARFGIDKTDPSFKDTSAMREIISEQNMRRKNKR 729
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Match: B7GAK3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GAK3_PHATC) HSP 1 Score: 79.7 bits (195), Expect = 1.980e-15 Identity = 53/89 (59.55%), Postives = 60/89 (67.42%), Query Frame = 1
Query: 16 RDYDMHRLAREEKLKGKKLRGKRKRKEVA-REKAPGQNFRVDVADERFAAVLEG-DTRFGIDRTDSSFKDTEGMRSILVERS-RRKDKK 273
RDYDM L R EK K KK G RKR EVA G F VD +D+RF AVL+G D RFGIDRTD SFK+T MR IL E++ RRKDK+
Sbjct: 566 RDYDMRGLQRLEKNKDKKFTGSRKRNEVALAANVTGTEFHVDTSDQRFKAVLDGTDDRFGIDRTDPSFKETPAMREILKEQTLRRKDKR 654
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Match: I2CPY8_NANGC (NUC153 domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPY8_NANGC) HSP 1 Score: 73.6 bits (179), Expect = 2.900e-14 Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 1 DEEDRRDYDMHRLAREEKLKGKKLRGKRKRKEVAREKA-PGQNFRVDVADERFAAVLEGDTRFGIDRTDSSFKDTEGMRSILVERSRRK 264
+EE RRD+DM L R EKLKGK A PGQ+FRVD +D RFAA+ EGD R+GI+ T +K+TEGM IL E+S+R+
Sbjct: 78 EEEGRRDFDMRALERTEKLKGKXXXXXXXXXXXXXXXAVPGQDFRVDTSDSRFAALFEGDARYGIETTSKEYKETEGMVRILREQSKRR 166
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Match: A0A4D9D496_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D496_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 1.570e-13 Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 1
Query: 1 DEEDRRDYDMHRLAREEKLKGKKLRGKRKRKEVAREKA-PGQNFRVDVADERFAAVLEGDTRFGIDRTDSSFKDTEGMRSILVERSRRK 264
+EE RRD+DM L R E+LKGKK A PGQ+FRVD +D RFAA+ EGD R+GI+ T +K+TEGM +L E+S+R+
Sbjct: 689 EEEGRRDFDMRALERTERLKGKKXXXXXXXXXXXXXXAVPGQDFRVDTSDSRFAALFEGDARYGIETTSKEYKETEGMVRVLREQSKRR 777
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Match: W2PT68_PHYPN (NUC153 domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PT68_PHYPN) HSP 1 Score: 59.3 bits (142), Expect = 2.970e-8 Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = 1
Query: 4 EEDRRDYDMHRLAREEKLKGKKLRGKRKRKEV---AREKAPG---QNFRVDVADERFAAVLEGDTRFGIDRTDSSFKDTEGMRSILVERSRRKD 267
E+D R++DM ++A++EK+K L+GKR+ KE+ A+ KA G + F D AD RF+A+ ++F +D TD FK TE ++I ER +R D
Sbjct: 575 EQDERNFDMKKIAKQEKVKS--LKGKRRAKEMKKLAKHKASGGLQEGFEFDAADPRFSALYAKGSQFQLDPTDPKFKKTEATQAIFKERRQRYD 666
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Match: A0A6A4VZN5_AMPAM (ESF1 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VZN5_AMPAM) HSP 1 Score: 57.4 bits (137), Expect = 1.220e-7 Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 1 DEEDRRDYDMHRLAREEKLK--GKKLRGKRKRKEVAREKAPGQNFRVDVADERFAAVLEGDTRFGIDRTDSSFKDTEGMRSILVERSRR 261
+E++RR +D ++ ++E GKK + K+ RK A EKAP +F+VDVAD RF + E F +D +D+ FK TEGM+ ++ E+ RR
Sbjct: 173 EEDNRRHFDFKQIVKDETATAAGKKKKWKKXRK-PAEEKAPADDFQVDVADPRFTKMFES-AEFNVDPSDARFKPTEGMKRLVGEKQRR 259 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15240.3902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig15240.3902.1 >prot_H-canaliculatus_F_contig15240.3902.1 ID=prot_H-canaliculatus_F_contig15240.3902.1|Name=mRNA_H-canaliculatus_F_contig15240.3902.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=82bp MHRLAREEKLKGKKLRGKRKRKEVAREKAPGQNFRVDVADERFAAVLEGDback to top mRNA from alignment at H-canaliculatus_F_contig15240:1121..2063+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig15240.3902.1 ID=mRNA_H-canaliculatus_F_contig15240.3902.1|Name=mRNA_H-canaliculatus_F_contig15240.3902.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=943bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15240:1121..2063+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15240:1121..2063+ >mRNA_H-canaliculatus_F_contig15240.3902.1 ID=mRNA_H-canaliculatus_F_contig15240.3902.1|Name=mRNA_H-canaliculatus_F_contig15240.3902.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=492bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15240:1121..2063+ (Hapterophycus canaliculatus Oshoro5f female)back to top |