mRNA_H-canaliculatus_F_contig1524.3899.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Match: A0A6H5K9Y9_9PHAE (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y9_9PHAE) HSP 1 Score: 373 bits (958), Expect = 1.870e-124 Identity = 214/339 (63.13%), Postives = 243/339 (71.68%), Query Frame = 1
Query: 1 RAPRVYLHGSNLHVGQIVQPTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVS-----SKSGKLH-----------GHRGREKRARVGGHSAVELRVDYLTRRQPDNRGGGEGL--DKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADANTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELLR--------VGL-----------NVIFVCKERDADAPPLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQHPKAAFLVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALSSWSAFWAAR 906
RAPRVYL+G+NLHVGQ VQ TPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAV+ S S +L G RGR KR+ VG VELRV+ LTRRQP GGG+G D AP +EL+FAPIRKQRLK+LVEKAVE+GASRLTPVLT+RTQ+GAV+DA+ +LG TAVEAAEQCERMTVPPV V LAS L LEL + +GL +++FVCKERD DAPPLLEALA Y Q + QD NS DG + + AAFL+GPEGGFDP E+ + +YPFVRFVSLG VLRAETAAVYALSSWSAFWA+R
Sbjct: 142 RAPRVYLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSSSTSSSSRLERSGEKIGSGRGGRRGRGKRSTVGADKVVELRVECLTRRQPGIGGGGDGEVEDVDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLRSLELRQSSCDLSSIIGLARDRGGDLSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEERRQDHVNSSDGSRNAN-----AAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYALSSWSAFWASR 475
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Match: D7G8G1_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G1_ECTSI) HSP 1 Score: 311 bits (798), Expect = 1.090e-102 Identity = 183/304 (60.20%), Postives = 209/304 (68.75%), Query Frame = 1
Query: 94 MRLRDGSPVRVFDGVNGEFLAAV---SSKSGKLH-----------GHRGREKRARVGGHSAVELRVDYLTRRQPD--NRGGGEGLDKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADANTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELLR--------VGL-----------NVIFVCKERDADAPPLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQHPKAAFLVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALSSWSAFWA 900
MRLRDG+PVRVFDGVNGEFLAAV SS S +L G RGR KR+ G +ELRV+ LTRRQP GGGE D AP +EL+FAPIRKQRLK+LVEKAVE+GASRLTPVLT+RTQ+GAV+DA+ +LG TAVEAAEQCERMTVPP+ V LAS L LEL VGL +++FVCKERD DAPPLLEALA Y Q + + QD NS D + + AAFL+GPEGGFDP E+ + +YPFVRFVSLG VLRAETAAVYALSSWSAFWA
Sbjct: 1 MRLRDGNPVRVFDGVNGEFLAAVATSSSSSSRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRVECLTRRQPGIGGGGGGEVEDLDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPMASPVTLASYLRSLELRHSSCDGSSIVGLARDRDGDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDNRNAN-----AAFLIGPEGGFDPDEIGTLAQYPFVRFVSLGRTVLRAETAAVYALSSWSAFWA 299
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Match: A0A835ZHN8_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHN8_9STRA) HSP 1 Score: 151 bits (381), Expect = 1.310e-40 Identity = 113/271 (41.70%), Postives = 151/271 (55.72%), Query Frame = 1
Query: 94 MRLRDGSPVRVFDGVNGEFLAAVSSKSGKLHGHRGREKRARVGGHSAVELRVDYLTRRQPDNRGGGEGLDKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADANTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELL-RVGLNVIFVCKERDADAPPLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQHPKAAFLVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALSSWSAFWAA 903
MRLRDGS VR F+G +GE+L +S G + R A+ L+V+ R Q ++ LD V L+ API++QR+K+LVEKA E+G + + PVLT+ TQ DA S+L A+EAAEQCER+++P + L LL +FVC+ER +PPLLEALA +A G +S +P AAFLVGPEGGF E M+ P+++ VSLG VLRAETAA+YALS +S+F AA
Sbjct: 1 MRLRDGSTVRAFNGRDGEYLCTLSQTDGSSSSKPA--GKGRRSAKPALALQVEQQLRSQAEDSCAD--LD-----VWLLCAPIKRQRMKLLVEKATELGVTCIAPVLTAHTQEAL--DAEGTSRL-LPIAIEAAEQCERLSLPHLHPPAPLPELLARWHSEPHTRARQLFVCQERSPQSPPLLEALAA----ASAARGVP--------SSAAP----AAFLVGPEGGFSADEREMLAGLPWIQGVSLGATVLRAETAALYALSCYSSFAAA 243
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Match: A0A4R3J6Z2_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Varunaivibrio sulfuroxidans TaxID=1773489 RepID=A0A4R3J6Z2_9PROT) HSP 1 Score: 144 bits (364), Expect = 6.940e-38 Identity = 111/282 (39.36%), Postives = 147/282 (52.13%), Query Frame = 1
Query: 34 LHVGQIVQPTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSKSGKLHGHRGREKRARVGGHSAVELRVDYLTRRQPDNRGGGEGLDKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADANTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELLRVGLNVIFVCKERDADAPPLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQHPKAAFLVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALS 879
L G V EQ+ YL +VMR +PV +F+G +GE+L +++ GK HG LR + RR+P+ V LIFAP++K RL LVEK+VE+G SRL+PV+T T G V A ++ A EAAEQCER+T+P V + LA LL E L VG +F ER APP+ +AL A EV R AFL+GPEGGF E++++ + PFV VSLGP +LRAETAA+ AL+
Sbjct: 21 LTAGARVALDHEQSHYLKNVMRAGKNAPVALFNGRDGEWLGELAAL-GKHHGE-------------VAILRQMHGQRREPN--------------VRLIFAPLKKARLDFLVEKSVELGVSRLSPVITRHTDVGRVNVARLRAQ-----AREAAEQCERLTLPTVDAPIALAQLLDQWERLPVGAPPLFAAVER-LSAPPIAQALQNVA-EVQER----------------------AFLIGPEGGFSRDEVALLDKAPFVFPVSLGPRILRAETAALVALA 245
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Match: A0A259M1G2_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Hyphomonas sp. 34-62-18 TaxID=1970392 RepID=A0A259M1G2_9PROT) HSP 1 Score: 142 bits (359), Expect = 2.790e-37 Identity = 111/306 (36.27%), Postives = 156/306 (50.98%), Query Frame = 1
Query: 7 PRVYLHGSNLHVGQIVQPTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSKSGKLHGHRGREKRARVGGHSAVELRVDYLTRRQPDNRGGGEGLDKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADANTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELLRVGLNVIFVCKER--DADAP---------PLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQHPKAAFLVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALSSWSA 891
PR+Y+ G ++ EQ+ YL+ V+RL +G+PVR+F+G +GE+ AAV SGK E+ TR+QP++ G + L+FAP++K + +++EKA E+GA+R+ PVLT RTQ V + F K+ A+EAAEQ ER+ +P + +AV L + L LE G VIF C E +ADAP P+LE +A G G P AA L GPEGGF P E + + VSLGP +LRAETAA+ A++ W A
Sbjct: 5 PRLYVDAPLAESG-VIALDDEQSNYLLRVLRLEEGAPVRLFNGRDGEWSAAVRKVSGKR-----------------AEVIPAAQTRKQPEHAGAD---------LTLLFAPVKKDQTDLIIEKATELGAARMVPVLTERTQTRTVRT-DRFRKI----ALEAAEQTERLGLPEIAEAVSLDAALDGLE---PGTAVIF-CDEAGDEADAPWGGQTGRAGPMLEVVA--------------------GLKGRP----AAILTGPEGGFTPAERAFLRGRAVTYPVSLGPRILRAETAAISAMALWQA 250
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Match: W7TJZ1_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJZ1_9STRA) HSP 1 Score: 146 bits (369), Expect = 6.260e-37 Identity = 116/309 (37.54%), Postives = 168/309 (54.37%), Query Frame = 1
Query: 1 RAPRVYLHGSNLHVGQIVQPTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSKSGKLHGHR--GREKRARVGGHSAVELRVDYLTRRQPDNRGGGEGL-DKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADANTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELLRVGLNVIFVCKERDADAPPLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQHPKAAFLVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALSSWSAFWAARLLER 918
R+PR+Y+ + L V + +Q YL+ VMRLR G+ VRVF+ +GE++A V+ ++ + R GR + R S V L R GGGE D+ + L FAP+++ RLKIL EKA E+G + L PVLT T A A K VEAAEQCER+ VP V+ A+ +LL E R G +++C+ER+ A P++E L +E+ +D N + G+P + ++GPEGGF P E++ M +P R VSLGP+VLRAETA + A+ + + AR L +
Sbjct: 156 RSPRLYVPEALLGKHVPVPISTDQRHYLLKVMRLRPGAYVRVFNRRDGEWIAVVADEAPDMEPKREIGRSDKKRTRRGSDVSLIAKARIR-----EGGGEQRNDEGESKLRLCFAPLKRARLKILFEKATEMGVTHLQPVLTEHTDV-APRHAEEMMKKMEGGLVEAAEQCERIGVPEVLPAMTFDALL---EEERGGGGRLYICREREG-ARPIMEVLERDWKEIN----EDRKNGKKEEHRGTP-----SIVIGPEGGFSPRELAAMKGHP--RLVSLGPSVLRAETAGLVAVGVYVTWQEARSLRQ 443
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Match: A0A4Q5XQ17_9PROT (Ribosomal RNA small subunit methyltransferase E n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A4Q5XQ17_9PROT) HSP 1 Score: 138 bits (347), Expect = 1.600e-35 Identity = 109/302 (36.09%), Postives = 146/302 (48.34%), Query Frame = 1
Query: 7 PRVYLHGSNLHVGQIVQPTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSKSGKLHGHRGREKRARVGGHSAVELRVDYLTRRQPDNRGGGEGLDKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADANTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELLRVGLNVIFVCKERDADAPPLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQH-------PKAAFLVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALSSWSA 891
PR+++ +L G +Q YL V+RL G PVRVF+G +GEF A+VS+ + S L + R Q P + L+FAP++K+R LVEKAVE+GA+ + PV+T RT V + ++L A+EAAEQ ER+ VPPV +AVKL SLL + R L +YA E G+ G+ G +G AA L+GPEGGF P E + + PFVR V LGP +LRAETAAV AL+ W A
Sbjct: 5 PRLHV-APDLSEGADTPIDGDQAHYLTRVLRLEIGDPVRVFNGRDGEFDASVSAST-----------------KSTARLTLGARVREQA-----------AVPDLWLLFAPLKKERTDFLVEKAVELGAAEILPVITERTDAKTVR-VDRLARL----AIEAAEQTERLDVPPVHEAVKLDSLLVKWDPAR----------------------LLIYADEAGDDGGRPW--GGETGKAGPMAEVLAGLGDSPAAILIGPEGGFSPAERKRLRQLPFVRPVGLGPRILRAETAAVAALALWQA 248
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Match: A0A4D9D730_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D730_9STRA) HSP 1 Score: 145 bits (367), Expect = 2.300e-35 Identity = 111/308 (36.04%), Postives = 169/308 (54.87%), Query Frame = 1
Query: 1 RAPRVYLHGSNLHVGQIVQPTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSKSGKLHGHR--GREKRARVGGHSAVELRVDYLTRRQPDNRGGGEGLDKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADANTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELLRVGLNVIFVCKERDADAPPLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQHPKAAFLVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALSSWSAFWAARLLER 918
R+PR+Y+ + L V + +Q YL+ VMRLR G+ VRVF+ +GE++A ++ ++ + R GR + R S V L + + Q GG + D+ + L FAP+++ RLKIL EKA E+G + L PVLT T +K+ VEAAEQCER+ VP V+ A+ +LL E R G +++C+ER A P++E L ++E+ +D N + G+P + ++GPEGGF P E++ M +P R VSLGP+VLRAETA + A+ + + AR L +
Sbjct: 607 RSPRLYVPEALLGRHVPVPISADQRHYLLKVMRLRPGAYVRVFNRRDGEWIAVIADEAPDMEPKREIGRSDKKRTRRGSDVSL----IAKAQIREGGGEQRNDEGESKLRLCFAPLKRARLKILFEKATEMGVTHLQPVLTEYTDVAPRHAEEMMTKMERGL-VEAAEQCERIGVPEVLPAMTFDALL---EEERDGGGRLYICRERGG-ARPIMEVLERDSKEIN----EDRKNGKKEEHRGTP-----SIVIGPEGGFSPRELAAMKGHP--RLVSLGPSVLRAETAGLVAVGVYVTWQEARSLRQ 894
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Match: A0A062VES6_9PROT (Ribosomal RNA small subunit methyltransferase E n=2 Tax=Hyphomonas TaxID=85 RepID=A0A062VES6_9PROT) HSP 1 Score: 135 bits (339), Expect = 2.740e-34 Identity = 110/306 (35.95%), Postives = 154/306 (50.33%), Query Frame = 1
Query: 7 PRVYLHGSNLHVGQIVQPTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSKSGKLHGHRGREKRARVGGHSAVELRVDYLTRRQPDNRGGGEGLDKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADANTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELLRVGLNVIFVCKER--DADAP---------PLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQHPKAAFLVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALSSWSA 891
PR+Y+ + G IV EQ+ YL+ V+RL DG+PVR+F+G +GE+ AAV SGK R + Q + G D + L+FAP++K + +++EKA E+GA+R+ PVLT RTQ V + F K+ A+EAAEQ ER+ +P +++A A+L L+ L G+ VIF C E +A+AP P+LE L G G P AA L GPEGGF P E + + VSLGP +LRAETAA+ A++ W A
Sbjct: 5 PRLYVDAPLVASGVIVLDD-EQSNYLLRVLRLEDGAPVRLFNGRDGEWTAAVRKASGK---------------------RAEVTPTGQIRTQDGQIRTD-----LTLLFAPVKKDQTDLIIEKATELGAARMVPVLTERTQTRTVRT-DRFRKI----ALEAAEQTERLDLPEILEA---ATLDAALDALPEGMAVIF-CDEAGDEAEAPWGGKTGRARPMLEVLE--------------------GLKGRP----AAILTGPEGGFTPGERAFLLSRAETYPVSLGPRILRAETAAISAMTLWQA 250
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Match: A0A143DD91_9PROT (Ribosomal RNA small subunit methyltransferase E n=4 Tax=Haematospirillum TaxID=1804663 RepID=A0A143DD91_9PROT) HSP 1 Score: 134 bits (337), Expect = 4.520e-34 Identity = 106/274 (38.69%), Postives = 138/274 (50.36%), Query Frame = 1
Query: 70 QTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSKSGKLHGHRGREKRARVGGHSAVELRVDYLTRRQPDNRGGGEGLDKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADANTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELLRVGLNVIFVCKERDADAPPLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQHPKAAFLVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALSSWSA 891
Q RYL SV+R R V +F+G +G++LA + H R++ VELR R QPD G+ P V L+FAP++K ++V+KA E+GAS L PVLTSRT V +L ATA+EAAEQCER TVP + +L LL E R ++V E P V A+E + AAFL GPEGGFDP E ++ + PFVR VSLGP +LRAETAA+ +L+ W A
Sbjct: 27 QARYLGSVLRARPADRVCLFNGQDGDWLADIV--------HLDRQR---------VELRALSCLRPQPDT-----GI----PDVWLLFAPVKKDGTDMIVQKATELGASVLWPVLTSRTNSQRV----NVERLR-ATAIEAAEQCERSTVPDMRMPERLEPLLAGWEHTRT----LYVADETGRGDP----VATVLAREASG---------------------PAAFLTGPEGGFDPRETELLHQAPFVRPVSLGPRILRAETAAMASLTCWQA 240 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1524.3899.1 >prot_H-canaliculatus_F_contig1524.3899.1 ID=prot_H-canaliculatus_F_contig1524.3899.1|Name=mRNA_H-canaliculatus_F_contig1524.3899.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=312bp RAPRVYLHGSNLHVGQIVQPTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFback to top mRNA from alignment at H-canaliculatus_F_contig1524:427..1419+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1524.3899.1 ID=mRNA_H-canaliculatus_F_contig1524.3899.1|Name=mRNA_H-canaliculatus_F_contig1524.3899.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=993bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1524:427..1419+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1524:427..1419+ >mRNA_H-canaliculatus_F_contig1524.3899.1 ID=mRNA_H-canaliculatus_F_contig1524.3899.1|Name=mRNA_H-canaliculatus_F_contig1524.3899.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1872bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1524:427..1419+ (Hapterophycus canaliculatus Oshoro5f female)back to top |