mRNA_H-canaliculatus_F_contig1524.3899.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1524.3899.1
Unique NamemRNA_H-canaliculatus_F_contig1524.3899.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Match: A0A6H5K9Y9_9PHAE (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y9_9PHAE)

HSP 1 Score: 373 bits (958), Expect = 1.870e-124
Identity = 214/339 (63.13%), Postives = 243/339 (71.68%), Query Frame = 1
Query:    1 RAPRVYLHGSNLHVGQIVQPTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVS-----SKSGKLH-----------GHRGREKRARVGGHSAVELRVDYLTRRQPDNRGGGEGL--DKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADANTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELLR--------VGL-----------NVIFVCKERDADAPPLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQHPKAAFLVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALSSWSAFWAAR 906
            RAPRVYL+G+NLHVGQ VQ TPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAV+     S S +L            G RGR KR+ VG    VELRV+ LTRRQP   GGG+G   D  AP +EL+FAPIRKQRLK+LVEKAVE+GASRLTPVLT+RTQ+GAV+DA+   +LG  TAVEAAEQCERMTVPPV   V LAS L  LEL +        +GL           +++FVCKERD DAPPLLEALA Y Q  +    QD  NS DG  + +     AAFL+GPEGGFDP E+  + +YPFVRFVSLG  VLRAETAAVYALSSWSAFWA+R
Sbjct:  142 RAPRVYLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSSSTSSSSRLERSGEKIGSGRGGRRGRGKRSTVGADKVVELRVECLTRRQPGIGGGGDGEVEDVDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLRSLELRQSSCDLSSIIGLARDRGGDLSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEERRQDHVNSSDGSRNAN-----AAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYALSSWSAFWASR 475          
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Match: D7G8G1_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G1_ECTSI)

HSP 1 Score: 311 bits (798), Expect = 1.090e-102
Identity = 183/304 (60.20%), Postives = 209/304 (68.75%), Query Frame = 1
Query:   94 MRLRDGSPVRVFDGVNGEFLAAV---SSKSGKLH-----------GHRGREKRARVGGHSAVELRVDYLTRRQPD--NRGGGEGLDKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADANTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELLR--------VGL-----------NVIFVCKERDADAPPLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQHPKAAFLVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALSSWSAFWA 900
            MRLRDG+PVRVFDGVNGEFLAAV   SS S +L            G RGR KR+  G    +ELRV+ LTRRQP     GGGE  D  AP +EL+FAPIRKQRLK+LVEKAVE+GASRLTPVLT+RTQ+GAV+DA+   +LG  TAVEAAEQCERMTVPP+   V LAS L  LEL          VGL           +++FVCKERD DAPPLLEALA Y Q  + +  QD  NS D   + +     AAFL+GPEGGFDP E+  + +YPFVRFVSLG  VLRAETAAVYALSSWSAFWA
Sbjct:    1 MRLRDGNPVRVFDGVNGEFLAAVATSSSSSSRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRVECLTRRQPGIGGGGGGEVEDLDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPMASPVTLASYLRSLELRHSSCDGSSIVGLARDRDGDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDNRNAN-----AAFLIGPEGGFDPDEIGTLAQYPFVRFVSLGRTVLRAETAAVYALSSWSAFWA 299          
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Match: A0A835ZHN8_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHN8_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.310e-40
Identity = 113/271 (41.70%), Postives = 151/271 (55.72%), Query Frame = 1
Query:   94 MRLRDGSPVRVFDGVNGEFLAAVSSKSGKLHGHRGREKRARVGGHSAVELRVDYLTRRQPDNRGGGEGLDKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADANTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELL-RVGLNVIFVCKERDADAPPLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQHPKAAFLVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALSSWSAFWAA 903
            MRLRDGS VR F+G +GE+L  +S   G          + R     A+ L+V+   R Q ++      LD     V L+ API++QR+K+LVEKA E+G + + PVLT+ TQ     DA   S+L    A+EAAEQCER+++P +     L  LL             +FVC+ER   +PPLLEALA      +A  G          +S +P    AAFLVGPEGGF   E  M+   P+++ VSLG  VLRAETAA+YALS +S+F AA
Sbjct:    1 MRLRDGSTVRAFNGRDGEYLCTLSQTDGSSSSKPA--GKGRRSAKPALALQVEQQLRSQAEDSCAD--LD-----VWLLCAPIKRQRMKLLVEKATELGVTCIAPVLTAHTQEAL--DAEGTSRL-LPIAIEAAEQCERLSLPHLHPPAPLPELLARWHSEPHTRARQLFVCQERSPQSPPLLEALAA----ASAARGVP--------SSAAP----AAFLVGPEGGFSADEREMLAGLPWIQGVSLGATVLRAETAALYALSCYSSFAAA 243          
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Match: A0A4R3J6Z2_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Varunaivibrio sulfuroxidans TaxID=1773489 RepID=A0A4R3J6Z2_9PROT)

HSP 1 Score: 144 bits (364), Expect = 6.940e-38
Identity = 111/282 (39.36%), Postives = 147/282 (52.13%), Query Frame = 1
Query:   34 LHVGQIVQPTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSKSGKLHGHRGREKRARVGGHSAVELRVDYLTRRQPDNRGGGEGLDKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADANTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELLRVGLNVIFVCKERDADAPPLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQHPKAAFLVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALS 879
            L  G  V    EQ+ YL +VMR    +PV +F+G +GE+L  +++  GK HG                 LR  +  RR+P+              V LIFAP++K RL  LVEK+VE+G SRL+PV+T  T  G V  A   ++     A EAAEQCER+T+P V   + LA LL   E L VG   +F   ER   APP+ +AL   A EV  R                      AFL+GPEGGF   E++++ + PFV  VSLGP +LRAETAA+ AL+
Sbjct:   21 LTAGARVALDHEQSHYLKNVMRAGKNAPVALFNGRDGEWLGELAAL-GKHHGE-------------VAILRQMHGQRREPN--------------VRLIFAPLKKARLDFLVEKSVELGVSRLSPVITRHTDVGRVNVARLRAQ-----AREAAEQCERLTLPTVDAPIALAQLLDQWERLPVGAPPLFAAVER-LSAPPIAQALQNVA-EVQER----------------------AFLIGPEGGFSRDEVALLDKAPFVFPVSLGPRILRAETAALVALA 245          
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Match: A0A259M1G2_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Hyphomonas sp. 34-62-18 TaxID=1970392 RepID=A0A259M1G2_9PROT)

HSP 1 Score: 142 bits (359), Expect = 2.790e-37
Identity = 111/306 (36.27%), Postives = 156/306 (50.98%), Query Frame = 1
Query:    7 PRVYLHGSNLHVGQIVQPTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSKSGKLHGHRGREKRARVGGHSAVELRVDYLTRRQPDNRGGGEGLDKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADANTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELLRVGLNVIFVCKER--DADAP---------PLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQHPKAAFLVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALSSWSA 891
            PR+Y+       G ++    EQ+ YL+ V+RL +G+PVR+F+G +GE+ AAV   SGK                   E+     TR+QP++ G           + L+FAP++K +  +++EKA E+GA+R+ PVLT RTQ   V   + F K+    A+EAAEQ ER+ +P + +AV L + L  LE    G  VIF C E   +ADAP         P+LE +A                    G  G P    AA L GPEGGF P E + +        VSLGP +LRAETAA+ A++ W A
Sbjct:    5 PRLYVDAPLAESG-VIALDDEQSNYLLRVLRLEEGAPVRLFNGRDGEWSAAVRKVSGKR-----------------AEVIPAAQTRKQPEHAGAD---------LTLLFAPVKKDQTDLIIEKATELGAARMVPVLTERTQTRTVRT-DRFRKI----ALEAAEQTERLGLPEIAEAVSLDAALDGLE---PGTAVIF-CDEAGDEADAPWGGQTGRAGPMLEVVA--------------------GLKGRP----AAILTGPEGGFTPAERAFLRGRAVTYPVSLGPRILRAETAAISAMALWQA 250          
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Match: W7TJZ1_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJZ1_9STRA)

HSP 1 Score: 146 bits (369), Expect = 6.260e-37
Identity = 116/309 (37.54%), Postives = 168/309 (54.37%), Query Frame = 1
Query:    1 RAPRVYLHGSNLHVGQIVQPTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSKSGKLHGHR--GREKRARVGGHSAVELRVDYLTRRQPDNRGGGEGL-DKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADANTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELLRVGLNVIFVCKERDADAPPLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQHPKAAFLVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALSSWSAFWAARLLER 918
            R+PR+Y+  + L     V  + +Q  YL+ VMRLR G+ VRVF+  +GE++A V+ ++  +   R  GR  + R    S V L      R      GGGE   D+    + L FAP+++ RLKIL EKA E+G + L PVLT  T   A   A    K      VEAAEQCER+ VP V+ A+   +LL   E  R G   +++C+ER+  A P++E L    +E+     +D  N     + G+P     + ++GPEGGF P E++ M  +P  R VSLGP+VLRAETA + A+  +  +  AR L +
Sbjct:  156 RSPRLYVPEALLGKHVPVPISTDQRHYLLKVMRLRPGAYVRVFNRRDGEWIAVVADEAPDMEPKREIGRSDKKRTRRGSDVSLIAKARIR-----EGGGEQRNDEGESKLRLCFAPLKRARLKILFEKATEMGVTHLQPVLTEHTDV-APRHAEEMMKKMEGGLVEAAEQCERIGVPEVLPAMTFDALL---EEERGGGGRLYICREREG-ARPIMEVLERDWKEIN----EDRKNGKKEEHRGTP-----SIVIGPEGGFSPRELAAMKGHP--RLVSLGPSVLRAETAGLVAVGVYVTWQEARSLRQ 443          
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Match: A0A4Q5XQ17_9PROT (Ribosomal RNA small subunit methyltransferase E n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A4Q5XQ17_9PROT)

HSP 1 Score: 138 bits (347), Expect = 1.600e-35
Identity = 109/302 (36.09%), Postives = 146/302 (48.34%), Query Frame = 1
Query:    7 PRVYLHGSNLHVGQIVQPTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSKSGKLHGHRGREKRARVGGHSAVELRVDYLTRRQPDNRGGGEGLDKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADANTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELLRVGLNVIFVCKERDADAPPLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQH-------PKAAFLVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALSSWSA 891
            PR+++   +L  G       +Q  YL  V+RL  G PVRVF+G +GEF A+VS+ +                  S   L +    R Q              P + L+FAP++K+R   LVEKAVE+GA+ + PV+T RT    V   +  ++L    A+EAAEQ ER+ VPPV +AVKL SLL   +  R                      L +YA E     G+     G+ G +G             AA L+GPEGGF P E   + + PFVR V LGP +LRAETAAV AL+ W A
Sbjct:    5 PRLHV-APDLSEGADTPIDGDQAHYLTRVLRLEIGDPVRVFNGRDGEFDASVSAST-----------------KSTARLTLGARVREQA-----------AVPDLWLLFAPLKKERTDFLVEKAVELGAAEILPVITERTDAKTVR-VDRLARL----AIEAAEQTERLDVPPVHEAVKLDSLLVKWDPAR----------------------LLIYADEAGDDGGRPW--GGETGKAGPMAEVLAGLGDSPAAILIGPEGGFSPAERKRLRQLPFVRPVGLGPRILRAETAAVAALALWQA 248          
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Match: A0A4D9D730_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D730_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.300e-35
Identity = 111/308 (36.04%), Postives = 169/308 (54.87%), Query Frame = 1
Query:    1 RAPRVYLHGSNLHVGQIVQPTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSKSGKLHGHR--GREKRARVGGHSAVELRVDYLTRRQPDNRGGGEGLDKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADANTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELLRVGLNVIFVCKERDADAPPLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQHPKAAFLVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALSSWSAFWAARLLER 918
            R+PR+Y+  + L     V  + +Q  YL+ VMRLR G+ VRVF+  +GE++A ++ ++  +   R  GR  + R    S V L    + + Q    GG +  D+    + L FAP+++ RLKIL EKA E+G + L PVLT  T           +K+     VEAAEQCER+ VP V+ A+   +LL   E  R G   +++C+ER   A P++E L   ++E+     +D  N     + G+P     + ++GPEGGF P E++ M  +P  R VSLGP+VLRAETA + A+  +  +  AR L +
Sbjct:  607 RSPRLYVPEALLGRHVPVPISADQRHYLLKVMRLRPGAYVRVFNRRDGEWIAVIADEAPDMEPKREIGRSDKKRTRRGSDVSL----IAKAQIREGGGEQRNDEGESKLRLCFAPLKRARLKILFEKATEMGVTHLQPVLTEYTDVAPRHAEEMMTKMERGL-VEAAEQCERIGVPEVLPAMTFDALL---EEERDGGGRLYICRERGG-ARPIMEVLERDSKEIN----EDRKNGKKEEHRGTP-----SIVIGPEGGFSPRELAAMKGHP--RLVSLGPSVLRAETAGLVAVGVYVTWQEARSLRQ 894          
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Match: A0A062VES6_9PROT (Ribosomal RNA small subunit methyltransferase E n=2 Tax=Hyphomonas TaxID=85 RepID=A0A062VES6_9PROT)

HSP 1 Score: 135 bits (339), Expect = 2.740e-34
Identity = 110/306 (35.95%), Postives = 154/306 (50.33%), Query Frame = 1
Query:    7 PRVYLHGSNLHVGQIVQPTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSKSGKLHGHRGREKRARVGGHSAVELRVDYLTRRQPDNRGGGEGLDKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADANTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELLRVGLNVIFVCKER--DADAP---------PLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQHPKAAFLVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALSSWSA 891
            PR+Y+    +  G IV    EQ+ YL+ V+RL DG+PVR+F+G +GE+ AAV   SGK                     R +     Q   + G    D     + L+FAP++K +  +++EKA E+GA+R+ PVLT RTQ   V   + F K+    A+EAAEQ ER+ +P +++A   A+L   L+ L  G+ VIF C E   +A+AP         P+LE L                     G  G P    AA L GPEGGF P E + +        VSLGP +LRAETAA+ A++ W A
Sbjct:    5 PRLYVDAPLVASGVIVLDD-EQSNYLLRVLRLEDGAPVRLFNGRDGEWTAAVRKASGK---------------------RAEVTPTGQIRTQDGQIRTD-----LTLLFAPVKKDQTDLIIEKATELGAARMVPVLTERTQTRTVRT-DRFRKI----ALEAAEQTERLDLPEILEA---ATLDAALDALPEGMAVIF-CDEAGDEAEAPWGGKTGRARPMLEVLE--------------------GLKGRP----AAILTGPEGGFTPGERAFLLSRAETYPVSLGPRILRAETAAISAMTLWQA 250          
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Match: A0A143DD91_9PROT (Ribosomal RNA small subunit methyltransferase E n=4 Tax=Haematospirillum TaxID=1804663 RepID=A0A143DD91_9PROT)

HSP 1 Score: 134 bits (337), Expect = 4.520e-34
Identity = 106/274 (38.69%), Postives = 138/274 (50.36%), Query Frame = 1
Query:   70 QTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSKSGKLHGHRGREKRARVGGHSAVELRVDYLTRRQPDNRGGGEGLDKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADANTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELLRVGLNVIFVCKERDADAPPLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQHPKAAFLVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALSSWSA 891
            Q RYL SV+R R    V +F+G +G++LA +         H  R++         VELR     R QPD      G+    P V L+FAP++K    ++V+KA E+GAS L PVLTSRT    V       +L  ATA+EAAEQCER TVP +    +L  LL   E  R     ++V  E     P       V A+E +                       AAFL GPEGGFDP E  ++ + PFVR VSLGP +LRAETAA+ +L+ W A
Sbjct:   27 QARYLGSVLRARPADRVCLFNGQDGDWLADIV--------HLDRQR---------VELRALSCLRPQPDT-----GI----PDVWLLFAPVKKDGTDMIVQKATELGASVLWPVLTSRTNSQRV----NVERLR-ATAIEAAEQCERSTVPDMRMPERLEPLLAGWEHTRT----LYVADETGRGDP----VATVLAREASG---------------------PAAFLTGPEGGFDPRETELLHQAPFVRPVSLGPRILRAETAAMASLTCWQA 240          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1524.3899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9Y9_9PHAE1.870e-12463.1316S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
D7G8G1_ECTSI1.090e-10260.2016S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A835ZHN8_9STRA1.310e-4041.7016S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A4R3J6Z2_9PROT6.940e-3839.36Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A259M1G2_9PROT2.790e-3736.27Ribosomal RNA small subunit methyltransferase E n=... [more]
W7TJZ1_9STRA6.260e-3737.5416S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A4Q5XQ17_9PROT1.600e-3536.09Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A4D9D730_9STRA2.300e-3536.0416S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A062VES6_9PROT2.740e-3435.95Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A143DD91_9PROT4.520e-3438.69Ribosomal RNA small subunit methyltransferase E n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1524contigH-canaliculatus_F_contig1524:427..1419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.4
Seed ortholog evalue2.4e-82
Seed eggNOG ortholog2880.D7G8G1
EggNOG free text desc.RNA methyltransferase
EggNOG OGs2SA8N@2759,COG1385@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size936
Cds size936
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929262.2919242-CDS-H-canaliculatus_F_contig1524:426..10151622929262.2919242-CDS-H-canaliculatus_F_contig1524:426..1015Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1524 427..1015 +
1696845741.1076536-CDS-H-canaliculatus_F_contig1524:426..10151696845741.1076536-CDS-H-canaliculatus_F_contig1524:426..1015Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1524 427..1015 +
1622929262.3110244-CDS-H-canaliculatus_F_contig1524:1072..14191622929262.3110244-CDS-H-canaliculatus_F_contig1524:1072..1419Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1524 1073..1419 +
1696845741.120826-CDS-H-canaliculatus_F_contig1524:1072..14191696845741.120826-CDS-H-canaliculatus_F_contig1524:1072..1419Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1524 1073..1419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1524.3899.1prot_H-canaliculatus_F_contig1524.3899.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1524 427..1419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1524.3899.1

>prot_H-canaliculatus_F_contig1524.3899.1 ID=prot_H-canaliculatus_F_contig1524.3899.1|Name=mRNA_H-canaliculatus_F_contig1524.3899.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=312bp
RAPRVYLHGSNLHVGQIVQPTPEQTRYLVSVMRLRDGSPVRVFDGVNGEF
LAAVSSKSGKLHGHRGREKRARVGGHSAVELRVDYLTRRQPDNRGGGEGL
DKRAPGVELIFAPIRKQRLKILVEKAVEIGASRLTPVLTSRTQRGAVADA
NTFSKLGTATAVEAAEQCERMTVPPVMKAVKLASLLGDLELLRVGLNVIF
VCKERDADAPPLLEALAVYAQEVTAREGQDCTNSGDGGNSGSPQHPKAAF
LVGPEGGFDPVEMSMMTEYPFVRFVSLGPNVLRAETAAVYALSSWSAFWA
ARLLERCASTP*
back to top

mRNA from alignment at H-canaliculatus_F_contig1524:427..1419+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1524.3899.1 ID=mRNA_H-canaliculatus_F_contig1524.3899.1|Name=mRNA_H-canaliculatus_F_contig1524.3899.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=993bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1524:427..1419+ (Hapterophycus canaliculatus Oshoro5f female)
CGCGCCCCCCGGGTGTACCTTCATGGATCAAACCTGCACGTCGGGCAGAT CGTACAGCCAACACCGGAGCAAACGCGCTACCTTGTAAGCGTCATGCGTC TCCGAGACGGCAGTCCGGTGCGCGTGTTCGACGGCGTCAATGGTGAGTTC TTGGCGGCGGTATCCAGCAAAAGTGGGAAGCTTCATGGCCACAGAGGCAG AGAAAAGCGGGCTAGAGTAGGCGGCCATTCAGCAGTAGAGCTGCGGGTTG ATTACCTCACACGACGGCAACCGGATAATCGCGGCGGTGGCGAGGGACTG GACAAGCGTGCGCCGGGCGTGGAGCTCATCTTCGCGCCCATTCGGAAGCA GCGCCTCAAGATTTTGGTGGAAAAAGCAGTCGAGATCGGCGCGTCGCGAC TGACGCCTGTGTTGACCTCTCGCACGCAGAGGGGCGCCGTTGCAGATGCA AATACTTTCAGCAAACTTGGGACTGCCACGGCCGTTGAGGCTGCCGAGCA GTGCGAGCGCATGACGGTGCCCCCTGTGATGAAGGCAGTGAAGCTCGCTT CTCTGCTCGGGGATCTTGAGCTTCTTCGAGTTGGTCTCAGTACAGAAGGT AGCAGGCCCGATGACGTTGACACTAGCAACGGGCGACGCTCGCTAGATGT CATTTTCGTGTGTAAAGAGAGGGATGCGGATGCACCACCGCTTCTGGAAG CGCTTGCTGTATACGCGCAAGAGGTTACCGCACGAGAAGGGCAGGACTGT ACCAACTCGGGCGATGGCGGCAACAGCGGCAGCCCTCAGCACCCGAAGGC CGCCTTCCTTGTCGGACCGGAGGGAGGTTTTGACCCGGTCGAGATGAGCA TGATGACTGAGTACCCTTTTGTGCGTTTTGTGTCCCTCGGACCGAACGTG CTACGAGCTGAAACAGCGGCTGTGTACGCTCTAAGTTCCTGGAGTGCTTT TTGGGCTGCACGTCTACTGGAACGTTGTGCATCAACACCTTAA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1524:427..1419+

>mRNA_H-canaliculatus_F_contig1524.3899.1 ID=mRNA_H-canaliculatus_F_contig1524.3899.1|Name=mRNA_H-canaliculatus_F_contig1524.3899.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1872bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1524:427..1419+ (Hapterophycus canaliculatus Oshoro5f female)
CGCGCCCCCCGGGTGTACCTTCATGGATCAAACCTGCACGTCGGGCAGAT
CGTACAGCCAACACCGGAGCAAACGCGCTACCTTGTAAGCGTCATGCGTC
TCCGAGACGGCAGTCCGGTGCGCGTGTTCGACGGCGTCAATGGTGAGTTC
TTGGCGGCGGTATCCAGCAAAAGTGGGAAGCTTCATGGCCACAGAGGCAG
AGAAAAGCGGGCTAGAGTAGGCGGCCATTCAGCAGTAGAGCTGCGGGTTG
ATTACCTCACACGACGGCAACCGGATAATCGCGGCGGTGGCGAGGGACTG
GACAAGCGTGCGCCGGGCGTGGAGCTCATCTTCGCGCCCATTCGGAAGCA
GCGCCTCAAGATTTTGGTGGAAAAAGCAGTCGAGATCGGCGCGTCGCGAC
TGACGCCTGTGTTGACCTCTCGCACGCAGAGGGGCGCCGTTGCAGATGCA
AATACTTTCAGCAAACTTGGGACTGCCACGGCCGTTGAGGCTGCCGAGCA
GTGCGAGCGCATGACGGTGCCCCCTGTGATGAAGGCAGTGAAGCTCGCTT
CTCTGCTCGGGGATCTTGAGCTTCTTCGAGTTGGTCTCACGCGCCCCCCG
GGTGTACCTTCATGGATCAAACCTGCACGTCGGGCAGATCGTACAGCCAA
CACCGGAGCAAACGCGCTACCTTGTAAGCGTCATGCGTCTCCGAGACGGC
AGTCCGGTGCGCGTGTTCGACGGCGTCAATGGTGAGTTCTTGGCGGCGGT
ATCCAGCAAAAGTGGGAAGCTTCATGGCCACAGAGGCAGAGAAAAGCGGG
CTAGAGTAGGCGGCCATTCAGCAGTAGAGCTGCGGGTTGATTACCTCACA
CGACGGCAACCGGATAATCGCGGCGGTGGCGAGGGACTGGACAAGCGTGC
GCCGGGCGTGGAGCTCATCTTCGCGCCCATTCGGAAGCAGCGCCTCAAGA
TTTTGGTGGAAAAAGCAGTCGAGATCGGCGCGTCGCGACTGACGCCTGTG
TTGACCTCTCGCACGCAGAGGGGCGCCGTTGCAGATGCAAATACTTTCAG
CAAACTTGGGACTGCCACGGCCGTTGAGGCTGCCGAGCAGTGCGAGCGCA
TGACGGTGCCCCCTGTGATGAAGGCAGTGAAGCTCGCTTCTCTGCTCGGG
GATCTTGAGCTTCTTCGAGTTGGTCTCAATGTCATTTTCGTGTGTAAAGA
GAGGGATGCGGATGCACCACCGCTTCTGGAAGCGCTTGCTGTATACGCGC
AAGAGGTTACCGCACGAGAAGGGCAGGACTGTACCAACTCGGGCGATGGC
GGCAACAGCGGCAGCCCTCAGCACCCGAAGGCCGCCTTCCTTGTCGGACC
GGAGGGAGGTTTTGACCCGGTCGAGATGAGCATGATGACTGAGTACCCTT
TTGTGCGTTTTGTGTCCCTCGGACCGAACGTGCTACGAGCTGAAACAGCG
GCTGTGTACGCTCTAAGTTCCTGGAGTGCTTTTTGGGCTGCACGTCTACT
GGAACGTTGTGCATCAACACCTTAAATGTCATTTTCGTGTGTAAAGAGAG
GGATGCGGATGCACCACCGCTTCTGGAAGCGCTTGCTGTATACGCGCAAG
AGGTTACCGCACGAGAAGGGCAGGACTGTACCAACTCGGGCGATGGCGGC
AACAGCGGCAGCCCTCAGCACCCGAAGGCCGCCTTCCTTGTCGGACCGGA
GGGAGGTTTTGACCCGGTCGAGATGAGCATGATGACTGAGTACCCTTTTG
TGCGTTTTGTGTCCCTCGGACCGAACGTGCTACGAGCTGAAACAGCGGCT
GTGTACGCTCTAAGTTCCTGGAGTGCTTTTTGGGCTGCACGTCTACTGGA
ACGTTGTGCATCAACACCTTAA
back to top