mRNA_H-canaliculatus_F_contig15232.3898.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15232.3898.1
Unique NamemRNA_H-canaliculatus_F_contig15232.3898.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig15232.3898.1 vs. uniprot
Match: D8LMD3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD3_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 3.630e-42
Identity = 78/82 (95.12%), Postives = 81/82 (98.78%), Query Frame = 1
Query:    1 VHPFAIVGITGIIVNALNLMPIGSLDGGRIAMSAFGRKAGGVLGTITLLLQAISSVFNNYSLQLFWGLLVILFQRGQDLPAK 246
            +HP AIVG+TGIIVNALNLMPIGSLDGGRIAMSAFGRKAGGVLGT+TLLLQAISSVFNNYSLQLFWGLLVILFQRGQDLPAK
Sbjct:  671 IHPLAIVGVTGIIVNALNLMPIGSLDGGRIAMSAFGRKAGGVLGTVTLLLQAISSVFNNYSLQLFWGLLVILFQRGQDLPAK 752          
BLAST of mRNA_H-canaliculatus_F_contig15232.3898.1 vs. uniprot
Match: A0A835ZIQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIQ3_9STRA)

HSP 1 Score: 128 bits (322), Expect = 5.820e-34
Identity = 59/80 (73.75%), Postives = 71/80 (88.75%), Query Frame = 1
Query:    4 HPFAIVGITGIIVNALNLMPIGSLDGGRIAMSAFGRKAGGVLGTITLLLQAISSVFNNYSLQLFWGLLVILFQRGQDLPA 243
            HP A++G TG+IVNALNLMP+G LDGGR+A + FGR+   VLGT+TLLLQA S++FNNYSLQLFWGL+VI+FQRGQDLPA
Sbjct:  272 HPLAVIGFTGVIVNALNLMPVGRLDGGRLAAAGFGRRTAAVLGTLTLLLQAASAIFNNYSLQLFWGLVVIIFQRGQDLPA 351          
BLAST of mRNA_H-canaliculatus_F_contig15232.3898.1 vs. uniprot
Match: A0A835ZNX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNX7_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.870e-27
Identity = 56/97 (57.73%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    4 HPFAIVGITGIIVNALNLMPIGSLDGGRIAMSAFGRKAGGVLGTITLLLQ-----------------AISSVFNNYSLQLFWGLLVILFQRGQDLPA 243
            HP A++G+ G+IVNALNLMP+G LDG R+A + FGR+   VLGT+TLLLQ                 A S++FNN+SLQLFWGL VI+FQRGQDLPA
Sbjct:  186 HPLAVIGLMGVIVNALNLMPVGRLDGERLAAAGFGRRTAAVLGTLTLLLQIVRHPQRTAAIITHFLDAASAIFNNHSLQLFWGLAVIIFQRGQDLPA 282          
BLAST of mRNA_H-canaliculatus_F_contig15232.3898.1 vs. uniprot
Match: M2WYG4_GALSU (Peptidase, M50 family protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WYG4_GALSU)

HSP 1 Score: 97.1 bits (240), Expect = 1.120e-21
Identity = 46/82 (56.10%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    1 VHPFAIVGITGIIVNALNLMPIGSLDGGRIAMSAFGRKAGGVLGTITLLLQAISSVFNNYSLQLFWGLLVILFQRGQDLPAK 246
            VHP  +VG TG+++NALNL+PIG LDGGRI    FGR     +G ITLLLQ + +V  N  L LFWG+ V+LFQR  DLP +
Sbjct:  509 VHPLTVVGYTGLLINALNLLPIGRLDGGRIVQCIFGRSTASRVGGITLLLQGLGAVLGNSPLLLFWGIFVVLFQREMDLPCE 590          
BLAST of mRNA_H-canaliculatus_F_contig15232.3898.1 vs. uniprot
Match: A0A7S2G2S1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2S1_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.080e-21
Identity = 38/82 (46.34%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 VHPFAIVGITGIIVNALNLMPIGSLDGGRIAMSAFGRKAGGVLGTITLLLQAISSVFNNYSLQLFWGLLVILFQRGQDLPAK 246
            VHP  +VG+TG++VNALN MP+G +DGGR +    GR +  ++G++ LLLQA+S +  +  +QLFWG+ ++ FQR Q++P  
Sbjct:   48 VHPLTVVGLTGLLVNALNFMPVGRIDGGRASTCVLGRPSATIIGSVILLLQALSGLAGDSPIQLFWGITILCFQRSQEIPCN 129          
BLAST of mRNA_H-canaliculatus_F_contig15232.3898.1 vs. uniprot
Match: A0A7S2RWG9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RWG9_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.210e-20
Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 VHPFAIVGITGIIVNALNLMPIGSLDGGRIAMSAFGRKAGGVLGTITLLLQAISSVFNNYSLQLFWGLLVILFQRGQDLPAK 246
            VHP   VG+TG++ +A+NL+P+G LDGGR   + FGR+   ++  +TL   AIS++  N ++ +FWGL V +FQR  DLP +
Sbjct:   20 VHPLFFVGLTGLVASAVNLLPVGRLDGGRACTAVFGRRTAFLISLVTLFFMAISAISGNSAISVFWGLFVTMFQRTPDLPTR 101          
BLAST of mRNA_H-canaliculatus_F_contig15232.3898.1 vs. uniprot
Match: A0A2V3J2Y1_9FLOR (Putative zinc metalloprotease EGY2, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2Y1_9FLOR)

HSP 1 Score: 91.3 bits (225), Expect = 1.180e-19
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = 1
Query:    1 VHPFAIVGITGIIVNALNLMPIGSLDGGRIAMSAFGRKAGGVLGTITLLLQAISSVFNNYSLQLFWGLLVILFQRGQDLPAK 246
            VHP  ++G TG++VNALNLMPIG LDGGRI  + +GR   G    +TL LQA+SS+  N  L LFWGL+ +  QR  D P +
Sbjct:  452 VHPLTVIGYTGLLVNALNLMPIGRLDGGRIVQALYGRAIAGRASALTLFLQAVSSLVGNSPLLLFWGLVCVFLQRESDYPCQ 533          
BLAST of mRNA_H-canaliculatus_F_contig15232.3898.1 vs. uniprot
Match: A0A7S1TER5_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TER5_9RHOD)

HSP 1 Score: 90.9 bits (224), Expect = 1.640e-19
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 VHPFAIVGITGIIVNALNLMPIGSLDGGRIAMSAFGRKAGGVLGTITLLLQAISSVFNNYSLQLFWGLLVILFQRGQDLPAK 246
            VHP  +VG TG++VNALN++PIG LDGGR+  S FGR     +  +T++LQ +SSV  N  L LFWGL V+  QR  ++P +
Sbjct:  504 VHPLVLVGYTGLLVNALNMIPIGRLDGGRVVQSLFGRNTASAVSALTVILQGLSSVLGNSPLLLFWGLAVVFLQREAEIPCQ 585          
BLAST of mRNA_H-canaliculatus_F_contig15232.3898.1 vs. uniprot
Match: R7Q4W8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4W8_CHOCR)

HSP 1 Score: 89.4 bits (220), Expect = 5.550e-19
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    1 VHPFAIVGITGIIVNALNLMPIGSLDGGRIAMSAFGRKAGGVLGTITLLLQAISSVFNNYSLQLFWGLLVILFQRGQDLPAK 246
            VHP A+VG TG++ NALNLMPIG LDGGRI  + +GR        ITLLLQ  SS+  N  L LFWGL+ +  QR  D P +
Sbjct:  432 VHPLAVVGYTGLLANALNLMPIGRLDGGRIMQALYGRAVASRATAITLLLQGFSSLLGNSPLLLFWGLVAVFLQRESDYPCR 513          
BLAST of mRNA_H-canaliculatus_F_contig15232.3898.1 vs. uniprot
Match: A0A7S0XJC7_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XJC7_9RHOD)

HSP 1 Score: 88.2 bits (217), Expect = 1.410e-18
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    1 VHPFAIVGITGIIVNALNLMPIGSLDGGRIAMSAFGRKAGGVLGTITLLLQAISSVFNNYSLQLFWGLLVILFQRGQDLP 240
            VHP  +VG T ++V ALN++P G LDGGRI  + FGR   G++G +TLLLQ   SVF + SL L WGL+ I  QR  ++P
Sbjct:  428 VHPLVVVGYTSLLVTALNMIPFGRLDGGRIMQAVFGRTTAGIIGGLTLLLQGFGSVFGDNSLLLIWGLIAIFLQRDAEVP 507          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15232.3898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMD3_ECTSI3.630e-4295.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZIQ3_9STRA5.820e-3473.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZNX7_9STRA1.870e-2757.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
M2WYG4_GALSU1.120e-2156.10Peptidase, M50 family protein n=1 Tax=Galdieria su... [more]
A0A7S2G2S1_9STRA2.080e-2146.34Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2RWG9_9STRA5.210e-2045.12Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A2V3J2Y1_9FLOR1.180e-1952.44Putative zinc metalloprotease EGY2, chloroplastic ... [more]
A0A7S1TER5_9RHOD1.640e-1950.00Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
R7Q4W8_CHOCR5.550e-1953.66Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0XJC7_9RHOD1.410e-1851.25Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15232contigH-canaliculatus_F_contig15232:182..1180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.8
Seed ortholog evalue1.7e-35
Seed eggNOG ortholog2880.D8LMD3
Preferred nameEGY1
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006508,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009651,GO:0009657,GO:0009658,GO:0009668,GO:0009719,GO:0009723,GO:0009725,GO:0009959,GO:0009987,GO:0010027,GO:0010033,GO:0010207,GO:0015979,GO:0016043,GO:0016787,GO:0019538,GO:0019684,GO:0022607,GO:0034622,GO:0042221,GO:0043157,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0048564,GO:0050896,GO:0060359,GO:0061024,GO:0065003,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901698
EggNOG free text desc.response to cation stress
EggNOG OGs2QUAP@2759,COG0750@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929262.2202933-CDS-H-canaliculatus_F_contig15232:181..3341622929262.2202933-CDS-H-canaliculatus_F_contig15232:181..334Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15232 182..334 +
1696845741.0878043-CDS-H-canaliculatus_F_contig15232:181..3341696845741.0878043-CDS-H-canaliculatus_F_contig15232:181..334Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15232 182..334 +
1622929262.2405424-CDS-H-canaliculatus_F_contig15232:1087..11801622929262.2405424-CDS-H-canaliculatus_F_contig15232:1087..1180Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15232 1088..1180 +
1696845741.0986137-CDS-H-canaliculatus_F_contig15232:1087..11801696845741.0986137-CDS-H-canaliculatus_F_contig15232:1087..1180Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15232 1088..1180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15232.3898.1prot_H-canaliculatus_F_contig15232.3898.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15232 182..1180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15232.3898.1

>prot_H-canaliculatus_F_contig15232.3898.1 ID=prot_H-canaliculatus_F_contig15232.3898.1|Name=mRNA_H-canaliculatus_F_contig15232.3898.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=82bp
VHPFAIVGITGIIVNALNLMPIGSLDGGRIAMSAFGRKAGGVLGTITLLL
QAISSVFNNYSLQLFWGLLVILFQRGQDLPAK
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mRNA from alignment at H-canaliculatus_F_contig15232:182..1180+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15232.3898.1 ID=mRNA_H-canaliculatus_F_contig15232.3898.1|Name=mRNA_H-canaliculatus_F_contig15232.3898.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=999bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15232:182..1180+ (Hapterophycus canaliculatus Oshoro5f female)
GTCCACCCCTTCGCTATCGTGGGCATCACCGGCATCATCGTGAACGCGCT CAACCTGATGCCCATCGGCAGCCTCGACGGGGGCCGCATCGCCATGTCCG CCTTTGGGCGAAAGGCCGGGGGCGTGCTCGGGACCATCACCCTGTTGCTG CAGGTGCGACGCCTTCCTCTGATTGGCGTTGAGCGTCGAAAGGCCTCGGG CGTGTCGGGAACTGTTGTGCCCGCCTGCCGCACGTGCACTGTGTTTGCCT GTGGCGTTGAGGAGGTTTTGAGTTGCAGTGACCGGCCAGGGGTGTGCTCG GCACTGCTGTCTCCGTGCTGCGCGGCAGGCGTGGCCGGGGTTGTGTCGGG CCCCGTGTCTGGTTCCGCCGCTCTTGCCACACGGCTTCATTGGTCTTCGG CCAAAAGGAGGGAAAGAGGGAAGGAGGGAAGACATCAATCCGCTTTAGCT CTCCGGTGCACCTGTGACGTCCTTTTTCGTTGCTGTCCCCCACTCCCACG CCCCGCGGCTCGTCCTGCGCACGGGTTCAGAGGAGTAATGCGTCCTCATT TTCCTCGCGCATGGAGATGAGCGACAGCGGTGTGGTGCAGGCAACCGGAG TCGTGTTTCCCGTTGCTCGTGAGCGCTGTCACTGGCGGCGTTTGCTCCTC CCGACCCTCCAAGCAGGGCACTCCGCACCGTTTGGCCGTAGAGCACGTCT TCTCCTGATTCGCTCGGTCCCTCTTTTCACCGCTTTCGGCCGTGTTTCGT CGGCGGCATGGTTCCCTCTGCCACTGCGGACACGGCGGGTTGGTCGTGAA CGCCGTCCTGTCTGCTTGCCCCCTTTTTCCCTTTTTCGATTTTTTTTTTC TCAGCTCATTCCTCGCTGCCCACCTCCCTTTCTTCGGGCTGTCAACACCT GCGCAGGCGATTAGCTCGGTGTTCAACAATTACTCGTTGCAGCTATTCTG GGGGCTCCTGGTGATTCTTTTCCAGCGGGGGCAAGACTTGCCGGCGAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15232:182..1180+

>mRNA_H-canaliculatus_F_contig15232.3898.1 ID=mRNA_H-canaliculatus_F_contig15232.3898.1|Name=mRNA_H-canaliculatus_F_contig15232.3898.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=492bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15232:182..1180+ (Hapterophycus canaliculatus Oshoro5f female)
GTCCACCCCTTCGCTATCGTGGGCATCACCGGCATCATCGTGAACGCGCT
CAACCTGATGCCCATCGGCAGCCTCGACGGGGGCCGCATCGCCATGTCCG
CCTTTGGGCGAAAGGCCGGGGGCGTGCTCGGGACCATCACCCTGTTGCTG
CAGGTCCACCCCTTCGCTATCGTGGGCATCACCGGCATCATCGTGAACGC
GCTCAACCTGATGCCCATCGGCAGCCTCGACGGGGGCCGCATCGCCATGT
CCGCCTTTGGGCGAAAGGCCGGGGGCGTGCTCGGGACCATCACCCTGTTG
CTGCAGGCGATTAGCTCGGTGTTCAACAATTACTCGTTGCAGCTATTCTG
GGGGCTCCTGGTGATTCTTTTCCAGCGGGGGCAAGACTTGCCGGCGAAGG
CGATTAGCTCGGTGTTCAACAATTACTCGTTGCAGCTATTCTGGGGGCTC
CTGGTGATTCTTTTCCAGCGGGGGCAAGACTTGCCGGCGAAG
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