mRNA_H-canaliculatus_F_contig15231.3897.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15231.3897.1
Unique NamemRNA_H-canaliculatus_F_contig15231.3897.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15231.3897.1 vs. uniprot
Match: D7G4J5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J5_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 1.640e-40
Identity = 100/202 (49.50%), Postives = 128/202 (63.37%), Query Frame = 1 
Query:    4 KCSSPEFVGFPSEGAGWRDGNGDAASARRNSLPSTPSGRRTVNTAAPGPLSRLLAASTAGGVAGRGDGESCPTEERRASGEILAE------------GAGLFTRRKRTFMEKVGDMLEAAAETAIPPAPSAAAV---SRHSSCLRREWEEWDAGPLLEFMGEEASARTMADRDREKEVARVGGDKDKLVALAKAWYIPFLSQ 564
            + +SPE VGF  E    R+G+G + ++ R+  PSTPSGRR    A+ GPLSRL+ A T G +   G   S  ++ +    ++LAE            G+G   ++K+TFMEK GDMLEAAAETAIP AP    V   SR ++   REWE+WDA  LLEFM EEA  RT AD+ R++++AR GGDKDKLVAL K WY PFLSQ
Sbjct:  349 ESASPELVGFTREQR-KREGSGASVTSLRS--PSTPSGRR----ASGGPLSRLMPAPT-GSIVSEGGDVSTGSDNKSVKSDVLAEEQPASTAAAPSGGSGNLAKKKKTFMEKFGDMLEAAAETAIPAAPGGGGVGYGSRAATAGPREWEQWDAPLLLEFMKEEA--RTAADKARKEDIARTGGDKDKLVALVKTWYTPFLSQ 540
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BLAST of mRNA_H-canaliculatus_F_contig15231.3897.1 vs. uniprot
Match: A0A6H5JC90_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC90_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.280e-27
Identity = 81/188 (43.09%), Postives = 97/188 (51.60%), Query Frame = 1 
Query:  157 RLLAASTAGGVAGRGDGESCPTEERRASGEILAE------------GAGLFTRRKRTFMEKVGDMLEAAAETAIPPAPSAAAV----------------------------------------SRHSSCLRREWEEWDAGPLLEFMGEEASARTMADRDREKEVARVGGDKDKLVALAKAWYIPFLSQ 564
            RLL A TA  V+  GD  S  ++ +    ++LAE            G+G   + K+TFMEK GDMLEAAAETAIP AP    V                                        SR ++   REWE+WDA PLLEFM EE  AR  AD+ R++E+AR GGDKDKLVAL KAWY PFLSQ
Sbjct:    3 RLLPAPTASIVSEGGD-VSTGSDNKSVKADVLAEEQPSSMAAAPSGGSGNLAK-KKTFMEKFGDMLEAAAETAIPAAPGGGGVGDGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGVGYGSRAATAGPREWEQWDAAPLLEFMKEETQARMTADKVRKEEIARTGGDKDKLVALVKAWYTPFLSQ 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15231.3897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4J5_ECTSI1.640e-4049.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC90_9PHAE1.280e-2743.09PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15231contigH-canaliculatus_F_contig15231:309..2239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size564
Cds size564
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15231.3897.1prot_H-canaliculatus_F_contig15231.3897.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15231 309..2239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929262.1088154-CDS-H-canaliculatus_F_contig15231:308..4661622929262.1088154-CDS-H-canaliculatus_F_contig15231:308..466Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15231 309..466 +
1696845741.0438724-CDS-H-canaliculatus_F_contig15231:308..4661696845741.0438724-CDS-H-canaliculatus_F_contig15231:308..466Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15231 309..466 +
1622929262.1321847-CDS-H-canaliculatus_F_contig15231:1241..13711622929262.1321847-CDS-H-canaliculatus_F_contig15231:1241..1371Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15231 1242..1371 +
1696845741.059918-CDS-H-canaliculatus_F_contig15231:1241..13711696845741.059918-CDS-H-canaliculatus_F_contig15231:1241..1371Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15231 1242..1371 +
1622929262.151568-CDS-H-canaliculatus_F_contig15231:1733..18981622929262.151568-CDS-H-canaliculatus_F_contig15231:1733..1898Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15231 1734..1898 +
1696845741.070054-CDS-H-canaliculatus_F_contig15231:1733..18981696845741.070054-CDS-H-canaliculatus_F_contig15231:1733..1898Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15231 1734..1898 +
1622929262.1708963-CDS-H-canaliculatus_F_contig15231:2128..22391622929262.1708963-CDS-H-canaliculatus_F_contig15231:2128..2239Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15231 2129..2239 +
1696845741.0781107-CDS-H-canaliculatus_F_contig15231:2128..22391696845741.0781107-CDS-H-canaliculatus_F_contig15231:2128..2239Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15231 2129..2239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15231.3897.1

>prot_H-canaliculatus_F_contig15231.3897.1 ID=prot_H-canaliculatus_F_contig15231.3897.1|Name=mRNA_H-canaliculatus_F_contig15231.3897.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=188bp
TKCSSPEFVGFPSEGAGWRDGNGDAASARRNSLPSTPSGRRTVNTAAPGP
LSRLLAASTAGGVAGRGDGESCPTEERRASGEILAEGAGLFTRRKRTFME
KVGDMLEAAAETAIPPAPSAAAVSRHSSCLRREWEEWDAGPLLEFMGEEA
SARTMADRDREKEVARVGGDKDKLVALAKAWYIPFLSQ
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mRNA from alignment at H-canaliculatus_F_contig15231:309..2239+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15231.3897.1 ID=mRNA_H-canaliculatus_F_contig15231.3897.1|Name=mRNA_H-canaliculatus_F_contig15231.3897.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1931bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15231:309..2239+ (Hapterophycus canaliculatus Oshoro5f female)
ACCAAGTGCTCGAGCCCCGAGTTCGTGGGTTTCCCGAGCGAGGGAGCGGG
CTGGCGAGACGGGAACGGGGACGCGGCTTCCGCGCGCAGGAACAGCTTGC
CGAGCACTCCGTCTGGGCGGAGAACTGTAAACACCGCCGCCCCGGGTCCG
CTGTCGAGGTGGGTTCATATTATGGCGAGGGTACGAAAAGTGAGGTACCC
CACAAGCTAGAGGAGTGGTGCAGGAGTGACTGTCGTAGAGGTGGGAAACT
GCGCTAATCGGAGGATATCTCACCGTCACGGAGAGGGAAGGAGTGACCAC
TGTCGAGGTGGGGACACGGTACAGTAAGTATCCTTGGTCATTTCACACGT
CTGAGCTGGCGTAGGAGTAATCGCTCTAGAGGTAGGTGTGGGTACACGGT
ACAGTACGAATCGCGAGTCGTGTCACGAGTCAGGGGGGGCGTCGGAGTGA
TCGCTGTCGAGGTGGGTGCTGCTGCTGTAGCTCAGATGCGTGTGCAGGAC
GCTCTCGAGCCCGAATCTTGGAGAGCGTAGAGAGTGAACATGTGATTGGC
TCACGTCTACAGTCTCGAGTCTGGAGTCTCACACCGAGGAAGACACACAG
TCTGGAGAGACAGCTCTCGGAAGCTCTAGACAGGCAGCTCTCGGAAGCTC
TCGGAATCTCTAGAAATGACGAGAACGGCGACGCGAAGGAGACCGGCAAC
CACGGTCACAACACCACCACCAACACCACCAACGCTACCGATGACGGGCA
ACGGGAAGCCGCCACACAAACACACAAGCACCCTTGCACCTGCGCGGCGT
TCGTGGGGAGAGAAACGACAAAAAAAGAAAAAAGGAACAGCGTAAGAAGA
GCAGGAGCAAATGCGGTACAACCAGCAGACATGAGCTCCCCACCCCCTCC
ACGCGCCACCACCACCAACGCCAATTTCATCAGGCTTTTGGCAGCGTCGA
CGGCGGGCGGCGTCGCCGGCAGAGGAGATGGCGAGAGTTGCCCGACCGAG
GAGAGGAGAGCATCCGGCGAAATTCTTGCCGAGGGGGCCGGGCTGTTCAC
CCGGAGGAAGCGGGTGTGTCTCCAAGGGTTTGCACGTTGAAAGGCGTATC
GTCTTCCTTGTTGGTCGCTCGATGTGCGTGCGTGTGTGTCGTCTCCGTTG
TTTGCGGTAACGTCTGGCGTGGGCTGGCGTCGCCGATCAAGCACGGGGTT
CGCGGCAGTCTCAGCCTCAACTCCGGGGAGAAGATGAGCCAGCTGCATGA
AACAAACCTTCAACGTCGTTTTGATTTTAGTTTTGACGGATGCCAAAATC
CTTGGGGACGATTCCTCAAAAGAGCGAAAACTTCGGTGTTGCCTTTGCGA
CGCAGTCCGTCCCCGCTCCTCGTCGCCTCGCCTCGCCTCTCACGACATAC
ACCCGCTTGTCGTGGAAAAAATCAGACGTTCATGGAGAAGGTCGGGGACA
TGCTCGAGGCGGCGGCGGAGACCGCTATTCCTCCAGCGCCCTCAGCCGCT
GCCGTCAGTCGCCATTCGTCGTGTCTTCGCCGGGAGTGGGAGGAGTGGGA
CGCTGGTCCGCTTCTGGAGTTCATGGGCGAAGAGGCGAGTGTTGTCGCCG
TCGTTACCGTTGGTGTTTGCGTCCGTGGTGCTGCTGACCTCGACGTTGAC
GCTGCCGCTGCTGCTGGTGCTTGCGCCGCCGCTTGCGTCGACGGTCTTGC
CGGCGTTGTTCCTGTCGATGGAATCGGCTCCGCGCGCTCTTGTACGGCGA
ACGTCGCGGTGGTTGTCCGCGCCGACCCCGCTGCTGTTCCGCCCCCGATC
GTCGGACCCGGTTGTCGCAGGCTCGCACGATGGCCGACCGGGACCGAGAG
AAAGAAGTCGCTCGAGTGGGAGGGGACAAGGACAAGCTCGTGGCCTTGGC
CAAGGCTTGGTACATACCCTTCTTGTCGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15231:309..2239+

>mRNA_H-canaliculatus_F_contig15231.3897.1 ID=mRNA_H-canaliculatus_F_contig15231.3897.1|Name=mRNA_H-canaliculatus_F_contig15231.3897.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1128bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15231:309..2239+ (Hapterophycus canaliculatus Oshoro5f female)
ACCAAGTGCTCGAGCCCCGAGTTCGTGGGTTTCCCGAGCGAGGGAGCGGG
CTGGCGAGACGGGAACGGGGACGCGGCTTCCGCGCGCAGGAACAGCTTGC
CGAGCACTCCGTCTGGGCGGAGAACTGTAAACACCGCCGCCCCGGGTCCG
CTGTCGAGACCAAGTGCTCGAGCCCCGAGTTCGTGGGTTTCCCGAGCGAG
GGAGCGGGCTGGCGAGACGGGAACGGGGACGCGGCTTCCGCGCGCAGGAA
CAGCTTGCCGAGCACTCCGTCTGGGCGGAGAACTGTAAACACCGCCGCCC
CGGGTCCGCTGTCGAGGCTTTTGGCAGCGTCGACGGCGGGCGGCGTCGCC
GGCAGAGGAGATGGCGAGAGTTGCCCGACCGAGGAGAGGAGAGCATCCGG
CGAAATTCTTGCCGAGGGGGCCGGGCTGTTCACCCGGAGGAAGCGGGCTT
TTGGCAGCGTCGACGGCGGGCGGCGTCGCCGGCAGAGGAGATGGCGAGAG
TTGCCCGACCGAGGAGAGGAGAGCATCCGGCGAAATTCTTGCCGAGGGGG
CCGGGCTGTTCACCCGGAGGAAGCGGACGTTCATGGAGAAGGTCGGGGAC
ATGCTCGAGGCGGCGGCGGAGACCGCTATTCCTCCAGCGCCCTCAGCCGC
TGCCGTCAGTCGCCATTCGTCGTGTCTTCGCCGGGAGTGGGAGGAGTGGG
ACGCTGGTCCGCTTCTGGAGTTCATGGGCGAAGAGGCGAGTACGTTCATG
GAGAAGGTCGGGGACATGCTCGAGGCGGCGGCGGAGACCGCTATTCCTCC
AGCGCCCTCAGCCGCTGCCGTCAGTCGCCATTCGTCGTGTCTTCGCCGGG
AGTGGGAGGAGTGGGACGCTGGTCCGCTTCTGGAGTTCATGGGCGAAGAG
GCGAGTGCTCGCACGATGGCCGACCGGGACCGAGAGAAAGAAGTCGCTCG
AGTGGGAGGGGACAAGGACAAGCTCGTGGCCTTGGCCAAGGCTTGGTACA
TACCCTTCTTGTCGCAGGCTCGCACGATGGCCGACCGGGACCGAGAGAAA
GAAGTCGCTCGAGTGGGAGGGGACAAGGACAAGCTCGTGGCCTTGGCCAA
GGCTTGGTACATACCCTTCTTGTCGCAG
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