mRNA_H-canaliculatus_F_contig1523.3896.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1523.3896.1
Unique NamemRNA_H-canaliculatus_F_contig1523.3896.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1523.3896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1523contigH-canaliculatus_F_contig1523:4516..4867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929262.038293-CDS-H-canaliculatus_F_contig1523:4515..48361622929262.038293-CDS-H-canaliculatus_F_contig1523:4515..4836Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1523 4516..4836 +
1696845741.0188103-CDS-H-canaliculatus_F_contig1523:4515..48361696845741.0188103-CDS-H-canaliculatus_F_contig1523:4515..4836Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1523 4516..4836 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929262.0526612-UTR-H-canaliculatus_F_contig1523:4836..48671622929262.0526612-UTR-H-canaliculatus_F_contig1523:4836..4867Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1523 4837..4867 +
1696845741.0314426-UTR-H-canaliculatus_F_contig1523:4836..48671696845741.0314426-UTR-H-canaliculatus_F_contig1523:4836..4867Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1523 4837..4867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1523.3896.1prot_H-canaliculatus_F_contig1523.3896.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1523 4516..4836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1523.3896.1

>prot_H-canaliculatus_F_contig1523.3896.1 ID=prot_H-canaliculatus_F_contig1523.3896.1|Name=mRNA_H-canaliculatus_F_contig1523.3896.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=107bp
TVLTAQRLLILVGPCTRKLWGDDVPSTTELSKTHTCDRPESLCTSRRGAS
RHHARLRSDPPSALTREARDPGSPTKRINAILNNIDFTLQLMMPTKWVTL
RSTCFV*
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mRNA from alignment at H-canaliculatus_F_contig1523:4516..4867+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1523.3896.1 ID=mRNA_H-canaliculatus_F_contig1523.3896.1|Name=mRNA_H-canaliculatus_F_contig1523.3896.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=352bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1523:4516..4867+ (Hapterophycus canaliculatus Oshoro5f female)
ACTGTACTGACAGCGCAGAGGCTCCTCATTCTAGTCGGGCCCTGCACCAG
AAAATTGTGGGGCGATGACGTACCAAGTACCACAGAACTGAGCAAAACGC
ATACATGCGACCGGCCCGAAAGTTTGTGCACCAGTCGACGCGGGGCCTCG
CGCCACCACGCGAGACTAAGAAGTGATCCGCCTTCCGCGTTGACGCGCGA
GGCACGGGACCCAGGGTCTCCGACCAAAAGAATCAACGCAATTTTGAATA
ATATCGACTTTACTCTTCAATTGATGATGCCTACAAAATGGGTCACTCTT
CGGTCCACGTGCTTTGTATGAATCAAAAATGGGTTAGGATATCCGGGTAG
CG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1523:4516..4867+

>mRNA_H-canaliculatus_F_contig1523.3896.1 ID=mRNA_H-canaliculatus_F_contig1523.3896.1|Name=mRNA_H-canaliculatus_F_contig1523.3896.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=642bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1523:4516..4867+ (Hapterophycus canaliculatus Oshoro5f female)
ACTGTACTGACAGCGCAGAGGCTCCTCATTCTAGTCGGGCCCTGCACCAG
AAAATTGTGGGGCGATGACGTACCAAGTACCACAGAACTGAGCAAAACGC
ATACATGCGACCGGCCCGAAAGTTTGTGCACCAGTCGACGCGGGGCCTCG
CGCCACCACGCGAGACTAAGAAGTGATCCGCCTTCCGCGTTGACGCGCGA
GGCACGGGACCCAGGGTCTCCGACCAAAAGAATCAACGCAATTTTGAATA
ATATCGACTTTACTCTTCAATTGATGATGCCTACAAAATGGGTCACTCTT
CGGTCCACGTGCTTTGTATGAACTGTACTGACAGCGCAGAGGCTCCTCAT
TCTAGTCGGGCCCTGCACCAGAAAATTGTGGGGCGATGACGTACCAAGTA
CCACAGAACTGAGCAAAACGCATACATGCGACCGGCCCGAAAGTTTGTGC
ACCAGTCGACGCGGGGCCTCGCGCCACCACGCGAGACTAAGAAGTGATCC
GCCTTCCGCGTTGACGCGCGAGGCACGGGACCCAGGGTCTCCGACCAAAA
GAATCAACGCAATTTTGAATAATATCGACTTTACTCTTCAATTGATGATG
CCTACAAAATGGGTCACTCTTCGGTCCACGTGCTTTGTATGA
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