mRNA_H-canaliculatus_F_contig15226.3892.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15226.3892.1
Unique NamemRNA_H-canaliculatus_F_contig15226.3892.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15226.3892.1 vs. uniprot
Match: D8LIL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIL9_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 1.470e-44
Identity = 120/222 (54.05%), Postives = 128/222 (57.66%), Query Frame = 1 
Query:    4 QAWETGPAVVYKASELRATFARRSTEGPGLIASFTEEQLSTTTTAGGEAFYEHELEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPRR-----SRVKKVVASDGKCYSLPLCIREKGLKLHLYVSLRAHRVDGDSLFTDPSAENAPLQRPYGRADITRENLLALRWVAE 654
            Q    GP  VYKASELR  +ARR+TE P LIA FTEEQL  +T  GGE FY  ELE                                                                XXXXXXXXXXXXXXXXX         SRVK+VVASDGKCY+LPLC+REKG KL+LYVSLRAHRVDGDSLFTDPSAENAPLQRPYGRADITRENLLALR V +
Sbjct:   81 QVGNAGPTAVYKASELRTVYARRATEAPLLIAGFTEEQLKASTAEGGEQFYADELEEAGEEEVSDAEDGEEKAAADAVAEGMGRGKRALNSSSSDAAAAGRGDYSIPTGKRAYRRRTVVGXXXXXXXXXXXXXXXXXXXXXXXXXXSRVKEVVASDGKCYTLPLCVREKGKKLNLYVSLRAHRVDGDSLFTDPSAENAPLQRPYGRADITRENLLALRAVRD 302
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BLAST of mRNA_H-canaliculatus_F_contig15226.3892.1 vs. uniprot
Match: A0A6H5K4Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Z5_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 4.030e-41
Identity = 146/220 (66.36%), Postives = 158/220 (71.82%), Query Frame = 1 
Query:    4 QAWETGPAVVYKASELRATFARRSTEGPGLIASFTEEQLSTTTTAGGEAFYEHELEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPRR---SRVKKVVASDGKCYSLPLCIREKGLKLHLYVSLRAHRVDGDSLFTDPSAENAPLQRPYGRADITRENLLALRWVAE 654
            Q    GP  VYKASELR  +ARR++E P LIA F +EQL  +T  GGE FY  +L+        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                         XXXXXXXXXXXX       SRVK+VVASDGKCY+LPLC+REKG KL+LYVSLRAHRVDGDSLFTDPSAENAPLQRPYGRADITRENLLALR V +
Sbjct:  449 QVGNAGPTAVYKASELRLVYARRASEAPLLIAGFKKEQLEASTAEGGEQFYADDLDEAGEEEVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCSVPTGKRAYKRKSVDGGSPLSPPXXXXXXXXXXXXXXXXXXXSRVKEVVASDGKCYTLPLCVREKGKKLNLYVSLRAHRVDGDSLFTDPSAENAPLQRPYGRADITRENLLALRAVRD 668
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15226.3892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIL9_ECTSI1.470e-4454.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4Z5_9PHAE4.030e-4166.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15226contigH-canaliculatus_F_contig15226:868..1599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_004350.1
Exons3
Model size657
Cds size657
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15226.3892.1prot_H-canaliculatus_F_contig15226.3892.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15226 868..1599 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929261.717418-CDS-H-canaliculatus_F_contig15226:867..11101622929261.717418-CDS-H-canaliculatus_F_contig15226:867..1110Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15226 868..1110 -
1696845740.8782442-CDS-H-canaliculatus_F_contig15226:867..11101696845740.8782442-CDS-H-canaliculatus_F_contig15226:867..1110Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15226 868..1110 -
1622929261.730922-CDS-H-canaliculatus_F_contig15226:1166..12521622929261.730922-CDS-H-canaliculatus_F_contig15226:1166..1252Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15226 1167..1252 -
1696845740.8926692-CDS-H-canaliculatus_F_contig15226:1166..12521696845740.8926692-CDS-H-canaliculatus_F_contig15226:1166..1252Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15226 1167..1252 -
1622929261.7458677-CDS-H-canaliculatus_F_contig15226:1271..15991622929261.7458677-CDS-H-canaliculatus_F_contig15226:1271..1599Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15226 1272..1599 -
1696845740.9047713-CDS-H-canaliculatus_F_contig15226:1271..15991696845740.9047713-CDS-H-canaliculatus_F_contig15226:1271..1599Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15226 1272..1599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15226.3892.1

>prot_H-canaliculatus_F_contig15226.3892.1 ID=prot_H-canaliculatus_F_contig15226.3892.1|Name=mRNA_H-canaliculatus_F_contig15226.3892.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=219bp
MQAWETGPAVVYKASELRATFARRSTEGPGLIASFTEEQLSTTTTAGGEA
FYEHELEGDGDGEGGDGGDGGDGDGDGGGGDRSWGKKKRSSDCGDGGGGG
GGRGAGGKGAPPYRRRLTSGEAAPAPAPAPAITAAAAATPRRSRVKKVVA
SDGKCYSLPLCIREKGLKLHLYVSLRAHRVDGDSLFTDPSAENAPLQRPY
GRADITRENLLALRWVAE*
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mRNA from alignment at H-canaliculatus_F_contig15226:868..1599-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15226.3892.1 ID=mRNA_H-canaliculatus_F_contig15226.3892.1|Name=mRNA_H-canaliculatus_F_contig15226.3892.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=732bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15226:868..1599- (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGGCTTGGGAAACCGGCCCCGCCGTCGTGTACAAGGCGTCGGAGCT
GCGGGCCACCTTCGCCCGCAGGTCCACCGAGGGCCCGGGGCTGATCGCGT
CCTTCACGGAGGAGCAGCTCAGTACCACCACCACCGCGGGAGGGGAGGCC
TTCTACGAGCACGAGCTGGAAGGAGATGGGGACGGGGAGGGCGGCGACGG
CGGCGACGGCGGCGACGGCGACGGCGACGGTGGCGGCGGCGATCGAAGCT
GGGGGAAGAAGAAGCGCTCCAGCGATTGCGGCGACGGGGGCGGTGGTGGA
GGGGGGAGGGGGGCAGGGGGAAAGGGGGGTGCTGGCGGTGCCGGTAGCCC
CGCCGTACCGAAGAAGACTTACAAGCGGAGAAGCAGCACCGGCACCGGCA
CCGGCACCGGCGATAACCGCGGCGGCGGCGGCGGTGGCGGCTTCCCGACA
TCCTTCTCCGCGGGAGCGAGGTCCCCGTGCTCCCCGAAGACCCCTCGCCG
CAGCAGGGTAAAGAAGGTCGTGGCCAGCGACGGCAAGTGCTACTCGCTGC
CGCTGTGCATCCGCGAGAAGGGGCTGAAGCTCCACCTCTACGTCTCGCTG
CGGGCGCACAGGGTGGACGGGGACTCGCTGTTTACGGACCCCTCCGCGGA
GAACGCGCCGCTGCAGAGACCGTACGGGCGGGCGGACATCACTCGGGAGA
ACCTGCTCGCCCTACGGTGGGTGGCGGAGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15226:868..1599-

>mRNA_H-canaliculatus_F_contig15226.3892.1 ID=mRNA_H-canaliculatus_F_contig15226.3892.1|Name=mRNA_H-canaliculatus_F_contig15226.3892.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1314bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15226:868..1599- (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGGCTTGGGAAACCGGCCCCGCCGTCGTGTACAAGGCGTCGGAGCT
GCGGGCCACCTTCGCCCGCAGGTCCACCGAGGGCCCGGGGCTGATCGCGT
CCTTCACGGAGGAGCAGCTCAGTACCACCACCACCGCGGGAGGGGAGGCC
TTCTACGAGCACGAGCTGGAAGGAGATGGGGACGGGGAGGGCGGCGACGG
CGGCGACGGCGGCGACGGCGACGGCGACGGTGGCGGCGGCGATCGAAGCT
GGGGGAAGAAGAAGCGCTCCAGCGATTGCGGCGACGGGGGCGGTGGTGGA
GGGGGGAGGGGGGCAGGGGGAAAGGGGGATGCAGGCTTGGGAAACCGGCC
CCGCCGTCGTGTACAAGGCGTCGGAGCTGCGGGCCACCTTCGCCCGCAGG
TCCACCGAGGGCCCGGGGCTGATCGCGTCCTTCACGGAGGAGCAGCTCAG
TACCACCACCACCGCGGGAGGGGAGGCCTTCTACGAGCACGAGCTGGAAG
GAGATGGGGACGGGGAGGGCGGCGACGGCGGCGACGGCGGCGACGGCGAC
GGCGACGGTGGCGGCGGCGATCGAAGCTGGGGGAAGAAGAAGCGCTCCAG
CGATTGCGGCGACGGGGGCGGTGGTGGAGGGGGGAGGGGGGCAGGGGGAA
AGGGGGCCCCGCCGTACCGAAGAAGACTTACAAGCGGAGAAGCAGCACCG
GCACCGGCACCGGCACCGGCGATAACCGCGGCGGCGGCGGCGCCCCGCCG
TACCGAAGAAGACTTACAAGCGGAGAAGCAGCACCGGCACCGGCACCGGC
ACCGGCGATAACCGCGGCGGCGGCGGCGACCCCTCGCCGCAGCAGGGTAA
AGAAGGTCGTGGCCAGCGACGGCAAGTGCTACTCGCTGCCGCTGTGCATC
CGCGAGAAGGGGCTGAAGCTCCACCTCTACGTCTCGCTGCGGGCGCACAG
GGTGGACGGGGACTCGCTGTTTACGGACCCCTCCGCGGAGAACGCGCCGC
TGCAGAGACCGTACGGGCGGGCGGACATCACTCGGGAGAACCTGCTCGCC
CTACGGTGGGTGGCGGAGTGAACCCCTCGCCGCAGCAGGGTAAAGAAGGT
CGTGGCCAGCGACGGCAAGTGCTACTCGCTGCCGCTGTGCATCCGCGAGA
AGGGGCTGAAGCTCCACCTCTACGTCTCGCTGCGGGCGCACAGGGTGGAC
GGGGACTCGCTGTTTACGGACCCCTCCGCGGAGAACGCGCCGCTGCAGAG
ACCGTACGGGCGGGCGGACATCACTCGGGAGAACCTGCTCGCCCTACGGT
GGGTGGCGGAGTGA
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