mRNA_H-canaliculatus_F_contig1522.3890.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1522.3890.1
Unique NamemRNA_H-canaliculatus_F_contig1522.3890.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1522.3890.1 vs. uniprot
Match: D8LH69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH69_ECTSI)

HSP 1 Score: 335 bits (860), Expect = 2.460e-114
Identity = 223/235 (94.89%), Postives = 224/235 (95.32%), Query Frame = 1 
Query:    1 MTTAHRPTWVAAQAAASDVGNWSTGGQASQAVSSWDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIDRRYDEGGAARGRDRLQLLLKEQGDVNLDDVKKYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRKEXXXXXXXXXXXXXXXXXKRKQEAAMTGNILLTQSNSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTW  AQAAASDVGNWSTGGQASQAVS+ DLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATI RRYDEGGA RGRDRLQLLLKEQGDVNLDDVKKYDD  XXXXXXXXXXXXXXXXXXXXXX LEKELEKIRKE  XXXXXXXXXXXXXXX RKQEAAMTGNILLTQSNSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK
Sbjct:    1 MTTAHRPTWAPAQAAASDVGNWSTGGQASQAVSAHDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIARRYDEGGAGRGRDRLQLLLKEQGDVNLDDVKKYDDEDXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 235
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1522.3890.1 vs. uniprot
Match: A0A836C8J3_9STRA (Pre-mRNA-splicing factor Cwf15/Cwc15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8J3_9STRA)

HSP 1 Score: 152 bits (383), Expect = 4.510e-42
Identity = 142/242 (58.68%), Postives = 166/242 (68.60%), Query Frame = 1 
Query:    1 MTTAHRPTWVAAQAAASDVGNWSTGGQASQAVSSWDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEK----PATIDRRYDEGGAARGRD---RLQLLLKEQGDVNLDDVKKYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRKEXXXXXXXXXXXXXXXXXKRKQEAAMTGNILLTQSNSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTW  A   ++  GNW+TGG + Q  S+ D P    LKFR+ GQNSEAEL++RD++  +E  E  A +EK    PA +       G A+G D                          XXXXXXXXXXXXXXXXXXXXXX  L+KELEKIR+ XXXXXXXXXXXXXXXXX   QEAAM+GN+LL+ + S+SQVKRRWNDDVVFKGQARTEP+ KKRFVNDTIR+DFHR FL KY+K
Sbjct:    1 MTTAHRPTWTPAVGTSNARGNWATGGLSWQ-FSAKDEPGHKKLKFRQLGQNSEAELKRRDLKTVLEAKEENAKEEKRTGRPAAVH------GDAKGGDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEALQKELEKIRRXXXXXXXXXXXXXXXXXXXXXQEAAMSGNVLLSMAQSTSQVKRRWNDDVVFKGQARTEPQVKKRFVNDTIRSDFHRSFLKKYVK 235
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1522.3890.1 vs. uniprot
Match: A0A8K1CHA0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHA0_PYTOL)

HSP 1 Score: 149 bits (375), Expect = 8.190e-41
Identity = 132/242 (54.55%), Postives = 162/242 (66.94%), Query Frame = 1 
Query:    1 MTTAHRPTWVAAQAAASDVGNWSTGGQASQAVSSWDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIDRRYDEGGAARGRDRLQLLLKEQGDVNLDDVK----KYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRKEXXXXXXXXXXXXXXXXXKRKQEAAMTGNILLTQSNSSS---QVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTW AA    ++ G W +GGQ SQ  S+ DLP  T LK R+ GQ +  E+  RD+RAE+E  E++  +EK  + +   D+        +L LL   + D     +K    KYDDA   XXXXXXXXXXXXXXXXXXX  L +ELEKI+KEXXXXXXXXXXXX     K  +E  + GN L TQ+ S+S   ++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL KY++
Sbjct:    1 MTTAHRPTWHAAVGQKNE-GGWQSGGQVSQQFSARDLPGHTKLKIRQVGQGTANEIELRDLRAELEGREQQYEEEKGKSNNTAQDKLRRLEENKKLLLLGDAEADARESQLKSVASKYDDADDVXXXXXXXXXXXXXXXXXXXAELMRELEKIKKEXXXXXXXXXXXXREAAEKMAREEILQGNPL-TQAASASGTAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLNKYVQ 240
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1522.3890.1 vs. uniprot
Match: A0A7S2FJV3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJV3_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.120e-39
Identity = 124/240 (51.67%), Postives = 147/240 (61.25%), Query Frame = 1 
Query:    1 MTTAHRPTWVAAQAAASDVGNWSTGGQASQAVSSWDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIDRRYDEGGAAR----GRDRLQLLLKEQGDVNLDDVKKYDDAXXXXXXXXXXXXXXXXXXXXXXXXL-EKELEKIRKEXXXXXXXXXXXXXXXXXKRKQEAAMTGNILLTQSNSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTWVA +  ASD GNWS GG+ S   S  D+P  T LK R+  Q  +        R E+E +E +ALDEK     R   E  ++     G   L L  +E     ++  +KYDD  XXXXXXXXXXXXXXXXXXXXXX L ++ELEKI+ E                 K   +AA+ GN L+  +  SSQVKR+WNDDVVFK QARTEPE KKRFVNDTIRNDFHRRFL K+ K
Sbjct:    1 MTTAHRPTWVAGKGEASDYGNWSLGGKVSGQFSVKDMPGHTKLKMRQGEQIPDFV-----TRDELESAEDKALDEKLKAKKRSALEDSSSSTVLGGAKPLMLKAEEVDTERIN--RKYDDGDXXXXXXXXXXXXXXXXXXXXXXELLQRELEKIKAEREKVRLEKEAEEAAIAEKTASDAALLGNPLMLGATKSSQVKRKWNDDVVFKNQARTEPEAKKRFVNDTIRNDFHRRFLAKFAK 233
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1522.3890.1 vs. uniprot
Match: K3WMS3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMS3_GLOUD)

HSP 1 Score: 143 bits (361), Expect = 9.910e-39
Identity = 124/240 (51.67%), Postives = 155/240 (64.58%), Query Frame = 1 
Query:    1 MTTAHRPTWVAAQAAASDVGNWSTGGQASQAVSSWDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIDRRYDEGGAARGRDRLQLLLKEQGDVNLDDVK----KYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRKEXXXXXXXXXXXXXXXXXKRKQEAAMTGNILLTQSNS-SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTW AA   A++ G W  GG  S+  S+ DLP+   LK+R+ GQ +  E+   D+RAE+E  E +  +EK    D   D+        +L LL   + D     +K    KYDDA          XXXXXXXXXXXXXXL +ELEKI++ XXXXXXXXXXXXXX   +  +   + GN LL QS+  S+++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL+KYI+
Sbjct:    1 MTTAHRPTWHAAVGQANE-GGWQAGGALSEQFSARDLPAHKKLKYRQVGQGTANEVELLDLRAELEGKEEKYEEEKGKKKDTALDKLRRLEENKKLLLLGDSEADARESQLKSIASKYDDADEIGDSDDSSXXXXXXXXXXXXXXLMRELEKIKRXXXXXXXXXXXXXXXASEQESRVEILQGNPLLQQSSGGSAKMKRRWNDDVVFKNQSRNEPELKKRFINDTIRNDFHRRFLSKYIQ 239
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1522.3890.1 vs. uniprot
Match: A0A2D4BX11_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BX11_PYTIN)

HSP 1 Score: 141 bits (356), Expect = 5.840e-38
Identity = 137/248 (55.24%), Postives = 164/248 (66.13%), Query Frame = 1 
Query:    1 MTTAHRPTWVAAQAAASDVGNWSTGGQASQAVSSWDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATID------RRYDEGGAARGRDRLQLLLKEQGDVNLDDVK----KYDDAXXXXXXXXXXXXXXXXXXXXXXXX-LEKELEKIRKEXXXXXXXXXXXXXXXXXKRKQEAAMTGNILLTQSNSSS--QVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTW AA    S+ G W TGGQ SQ  S+ DLP  T LK R+ GQ +  E+  RD+RAE+E  E++  +EK    D      RR +E        ++ LL   + D     +K    KYDDA   XXXXXXXXXXXXXXXXXXX   L +ELEKI+KEXXXXXXXXXXXXXXXXX   +E  + GN L     +S+  ++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL KY++
Sbjct:    1 MTTAHRPTWHAAVGQKSE-GGWQTGGQVSQQFSARDLPGHTKLKLRQVGQGTANEVEARDLRAELEGREQQYEEEKSKNSDSVQARLRRLEENK------KILLLGDAEADARESQLKSVASKYDDADDVXXXXXXXXXXXXXXXXXXXEAELMRELEKIKKEXXXXXXXXXXXXXXXXXXXXREEILQGNPLTAAQTASANAKMKRRWNDDVVFKNQSRNEPELKKRFINDTIRNDFHRRFLNKYVQ 241
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1522.3890.1 vs. uniprot
Match: A0A3F2RN91_9STRA (Uncharacterized protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A3F2RN91_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.220e-36
Identity = 123/240 (51.25%), Postives = 151/240 (62.92%), Query Frame = 1 
Query:    1 MTTAHRPTWVAAQAAASDVGNWSTGGQASQAVSSWDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIDRRYDEGGAARGRDRLQLLLKEQGDVNLDDVK----KYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRKEXXXXXXXXXXXXXXXXXKRKQEAAMTGNILLTQSNS-SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTW AA   A++ G W  GGQ S  VS+ DLP    LK R+ GQ +  E+   D+R E+E  E     EK    D   ++        ++ LL   + D     +K    KYDDA        XXXXXXXXXXXXXX  L +ELEKI++EXXXXXXXXXXXXXX   ++ +E  + GN L  Q  + S+++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL KYI+
Sbjct:    1 MTTAHRPTWHAAVGQANE-GGWQAGGQLSDQVSARDLPGHKHLKMRQVGQGTANEVELLDLRTELERKEETYEVEKGRKKDTALEKLRRLEKNKKILLLGDVETDARESQLKNVASKYDDADDGGDSDGXXXXXXXXXXXXXXAELMRELEKIKQEXXXXXXXXXXXXXXVAEQQSREEVLQGNPLTQQQTAGSAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLNKYIQ 239
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1522.3890.1 vs. uniprot
Match: A0A485KPE0_9STRA (Aste57867_10048 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KPE0_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.770e-36
Identity = 120/243 (49.38%), Postives = 151/243 (62.14%), Query Frame = 1 
Query:    1 MTTAHRPTWVAAQAAASDVGNWSTGGQASQAVSSWDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIDRRYDEGGAARGRDRLQLLLK--EQGDVNLDDVKKYDDAXXXXXXXXXXXXXXXXXXXXXXXX-LEKELEKIRKEXXXXXXXXXXXXXXXXXKRKQEAAMTGNILLTQS-----NSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTA RPTW AA    ++ G W+ GGQ S   S+ DLP QT LK R+ GQ +  EL  +D++ E+ + ER+  +EK   +D    +    R ++   LLLK  E  D   D V KYDDA        XXXXXXXXXXXXXXXX L +ELEKI+KEXXXXX X           +++E  + GN L +       + S+ +KR+WNDDVVFK Q+R EPETKKRF+NDTIRNDFHRRFL  YI+
Sbjct:    1 MTTAARPTWHAAVGQKNE-GGWNAGGQVSMQFSARDLPGQTKLKTRQIGQGTVDELGMKDLKGELSERERKYEEEKGKEVDTAQQK--MLRLKENKMLLLKGDEWEDRAKDVVAKYDDADDDTRQDSXXXXXXXXXXXXXXXXXLMRELEKIKKEXXXXXLXKEMVDREVEENQRKEEILLGNPLTSAQARNIPSGSATIKRKWNDDVVFKNQSRNEPETKKRFINDTIRNDFHRRFLKTYIQ 240
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1522.3890.1 vs. uniprot
Match: A0A067BVG0_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BVG0_SAPPC)

HSP 1 Score: 135 bits (341), Expect = 8.860e-36
Identity = 113/239 (47.28%), Postives = 144/239 (60.25%), Query Frame = 1 
Query:    1 MTTAHRPTWVAAQAAASDVGNWSTGGQASQAVSSWDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIDRRYDEGGAARGRDRLQLLLK--EQGDVNLDDVKKYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRKEXXXXXXXXXXXXXXXXXKRKQEAAMTGNILLTQSN--SSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTA RPT+ AA    ++ G W++GGQ S   S+ DLP  T LK R+ GQ +  EL +RD+  E+ D ER+  ++K   +D  + +    R +D   LLLK  E  D   D   KYDDA      XXXXXXXXXXXXXXX   L +ELEKI++E           XX    KR ++  + GN L +      S+ +KR+WNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL  YI+
Sbjct:    1 MTTAARPTFNAAMGKKNE-GGWNSGGQISMQFSARDLPGHTKLKTRQLGQGTSDELAERDLIGELTDRERKYEEDKLKEVD--FAQQKIMRLKDNKTLLLKGDEWEDRAKDVQTKYDDADDDVGDXXXXXXXXXXXXXXXEAELMRELEKIKREREEERLRKEQAXXDEEEKRAKDEVLMGNPLTSAMAPAGSATIKRKWNDDVVFKNQSRNEPELKKRFINDTIRNDFHRRFLKAYIQ 236
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1522.3890.1 vs. uniprot
Match: D0NV69_PHYIT (Uncharacterized protein n=23 Tax=Peronosporaceae TaxID=4777 RepID=D0NV69_PHYIT)

HSP 1 Score: 135 bits (339), Expect = 1.910e-35
Identity = 109/239 (45.61%), Postives = 137/239 (57.32%), Query Frame = 1 
Query:    1 MTTAHRPTWVAAQAAASDVGNWSTGGQASQAVSSWDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIDRRYDEGGAARGRDRLQLLLKEQGDVNLDDVK----KYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRKEXXXXXXXXXXXXXXXXXKRKQEAAMTGNILLTQSNS-SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYI 702
            MTTAHRPTW AA    S+ G W  GG+ S  VS+ DLP+   LK R+ GQ +  E+   D+R E+E  E +   EK    D   D+        ++ LL   + D     +K    KY+DA        XXXXXXXXXXXXXXX L +ELEKI++E                  + +E  + GN L  Q  + S+++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL KYI
Sbjct:    1 MTTAHRPTWHAA-VGQSNEGGWHAGGKLSDQVSARDLPAHKRLKMRQVGQGTANEVELLDLREELERKEEKYEVEKGRKKDTAQDKLRRLEENKKILLLGDAEADAKESQLKEVASKYNDADDGAGSEAXXXXXXXXXXXXXXXELMRELEKIKQEREEERLRKEEEARKTVELQSREEILQGNPLTQQQAAGSAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLNKYI 238
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1522.3890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH69_ECTSI2.460e-11494.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C8J3_9STRA4.510e-4258.68Pre-mRNA-splicing factor Cwf15/Cwc15 n=1 Tax=Tribo... [more]
A0A8K1CHA0_PYTOL8.190e-4154.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2FJV3_9STRA2.120e-3951.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
K3WMS3_GLOUD9.910e-3951.67Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BX11_PYTIN5.840e-3855.24Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A3F2RN91_9STRA1.220e-3651.25Uncharacterized protein n=4 Tax=Peronosporaceae Ta... [more]
A0A485KPE0_9STRA1.770e-3649.38Aste57867_10048 protein n=1 Tax=Aphanomyces stella... [more]
A0A067BVG0_SAPPC8.860e-3647.28Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
D0NV69_PHYIT1.910e-3545.61Uncharacterized protein n=23 Tax=Peronosporaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1522contigH-canaliculatus_F_contig1522:4942..10158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score342.4
Seed ortholog evalue1.6e-91
Seed eggNOG ortholog2880.D8LH69
Preferred nameCWC15
KEGG koko:K09191,ko:K12863
KEGG Pathwayko03040,map03040
KEGG ModuleM00353,M00355
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071007,GO:0071013,GO:0071014,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG3228@1,KOG3228@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03000,ko03021,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPre-mRNA-splicing factor Cwf15/Cwc15
Ec32 orthologEc-24_000770.1
Exons6
Model size708
Cds size708
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1522.3890.1prot_H-canaliculatus_F_contig1522.3890.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1522 4942..10158 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929261.2463102-CDS-H-canaliculatus_F_contig1522:4941..50651622929261.2463102-CDS-H-canaliculatus_F_contig1522:4941..5065Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1522 4942..5065 -
1696845740.6646333-CDS-H-canaliculatus_F_contig1522:4941..50651696845740.6646333-CDS-H-canaliculatus_F_contig1522:4941..5065Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1522 4942..5065 -
1622929261.2605371-CDS-H-canaliculatus_F_contig1522:6197..62621622929261.2605371-CDS-H-canaliculatus_F_contig1522:6197..6262Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1522 6198..6262 -
1696845740.6755643-CDS-H-canaliculatus_F_contig1522:6197..62621696845740.6755643-CDS-H-canaliculatus_F_contig1522:6197..6262Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1522 6198..6262 -
1622929261.2758524-CDS-H-canaliculatus_F_contig1522:6523..65621622929261.2758524-CDS-H-canaliculatus_F_contig1522:6523..6562Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1522 6524..6562 -
1696845740.6867623-CDS-H-canaliculatus_F_contig1522:6523..65621696845740.6867623-CDS-H-canaliculatus_F_contig1522:6523..6562Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1522 6524..6562 -
1622929261.2971547-CDS-H-canaliculatus_F_contig1522:7098..73251622929261.2971547-CDS-H-canaliculatus_F_contig1522:7098..7325Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1522 7099..7325 -
1696845740.6952677-CDS-H-canaliculatus_F_contig1522:7098..73251696845740.6952677-CDS-H-canaliculatus_F_contig1522:7098..7325Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1522 7099..7325 -
1622929261.3129475-CDS-H-canaliculatus_F_contig1522:9720..98971622929261.3129475-CDS-H-canaliculatus_F_contig1522:9720..9897Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1522 9721..9897 -
1696845740.7055602-CDS-H-canaliculatus_F_contig1522:9720..98971696845740.7055602-CDS-H-canaliculatus_F_contig1522:9720..9897Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1522 9721..9897 -
1622929261.3296425-CDS-H-canaliculatus_F_contig1522:10082..101581622929261.3296425-CDS-H-canaliculatus_F_contig1522:10082..10158Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1522 10083..10158 -
1696845740.7165072-CDS-H-canaliculatus_F_contig1522:10082..101581696845740.7165072-CDS-H-canaliculatus_F_contig1522:10082..10158Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1522 10083..10158 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1522.3890.1

>prot_H-canaliculatus_F_contig1522.3890.1 ID=prot_H-canaliculatus_F_contig1522.3890.1|Name=mRNA_H-canaliculatus_F_contig1522.3890.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=236bp
MTTAHRPTWVAAQAAASDVGNWSTGGQASQAVSSWDLPSQTTLKFRKTGQ
NSEAELRKRDVRAEVEDSERRALDEKPATIDRRYDEGGAARGRDRLQLLL
KEQGDVNLDDVKKYDDADDADSGDDLDSSDTDDDSDDDEEALEKELEKIR
KEREEARKKKEREDAEDEEKRKQEAAMTGNILLTQSNSSSQVKRRWNDDV
VFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK*
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mRNA from alignment at H-canaliculatus_F_contig1522:4942..10158-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1522.3890.1 ID=mRNA_H-canaliculatus_F_contig1522.3890.1|Name=mRNA_H-canaliculatus_F_contig1522.3890.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5217bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1522:4942..10158- (Hapterophycus canaliculatus Oshoro5f female)
ATGACAACCGCCCACCGACCTACATGGGTAGCGGCCCAAGCTGCTGCATC
CGATGTCGGGAACTGGTCCACTGGAGGTAAGAAACACTTTCATAGGCGTC
GATCTCACCGTTTGACCACCTTCTGTGACTTGAGTGTCTGTCTCACGGTC
GATGAGTTGACGACCCAGTTCCCTCGACGCTCTTTTATGCCTCAGTCAGC
TGTCTGTCGCTGATAAACATCTACCTCAATAGCATTGCATTTTCGTCTCT
CGATTGACCAGGACAAGCAAGTCAAGCAGTTTCTTCGTGGGATTTGCCAA
GCCAAACTACCCTAAAATTTAGGAAAACGGGCCAAAACAGCGAGGCGGAA
CTGCGCAAGCGGGATGTTCGCGCCGAGGTCGAAGACAGCGAACGACGTGC
CTTGGATGAGAAACCGGCAACAATCGATCGACGCTACGGTGAGACGAAAG
ATTTGGAATCGTTCGTTCCACACGCTGTGTTGTAGGTGAGACCGACGGCA
CGGCGCTGCCAATTGGGCCGCTTTTGTCAGACCTGGTTGTTGGTTCCAGA
TCTTCGGGTTAGGATGTTGGGATGGATTAGGTTGAAGCAACACGCCCTCC
GTATATTTGCCAATCTTGGCAGGCGGGACACGGGCGCCATTAAGGTGTTG
GGCTAGTAGCAACGACGTAACACCTTCTCAATATATAACAACCAAGGGTG
GGGTTAGGGTTAGGCCTAAGCGCCTTGGTTGTGGTGTGGTGCCTTCGCTG
CGCGTCCCGTAAGAACGATGTTGTCCCCTTTTTGTGGCTCGTGTCGTGCT
GTACCGCCTGCCAACCTCGGCCGATTTTCGAGCGCCAAAATCAACACCCC
TGCACCAGATCTGCACGTGCCAATCGGTAGGTTTGGTCTCTGCACCCTAT
CCGCAGTTCATTGCGTGCAAAACGTCGGCAGTGCGTTGACGTCATTTCGT
GTTTGAGCGCGTTTGTCTCTTTAACCCCCTAACAACTACGTACGATATTC
GACTCCCGACTGACCTCCGATAGAACAGCGGAGTGAACAAAAGCGCTTCA
GTTCTTGAAGGAAAACATCCGCCGCAGTTCGAGATGTACAAAAAAAAAGA
TAAGTACGGCAGTACGGCGGTACAAGTTATGCCAGCGTCCGGGGTCGAAA
TCTCTCCCCTCGACCAGCTGATGGCCTCTCCTTTGATCAAAGCACGACCG
CAAAGCGTCCACGCTTTCGCTCTTCGAGCTCGTCGCGCGTGCAACCTTGT
TTCTCCCCTATCTTCCATGTGCTCTAAATCCAACATGTGCCCAAAATCAT
CCCTTCAAATTGATCCCTGAAGTTACTTGAGTAACGTTTGAAGGGGTGTA
GCCGGTACTTGCACTTCTTCTGTACTCGTCTTGCGTCCCTTTTTCCTGGC
CAGTGCTAGGCCTTCGTGCACACTATCATACATAGGCCTTAGATTACTCT
CCACAAGGCCCATGCATTTCTCAGAGAAAGAGCTGCCTGTCTGTGTTGGT
GTGTGTGCAGGCAGTCGCACTTCTTGCGCCTTCGATAATTACTGCTGTAC
AACCTTTGGCGGGCTTTTTCATTGTCAGCTCCCCCCTACAAGGAGACCGC
CAAACCAGGCTGCAGAAAAAAAGGAGGCAAAAGTGATCCCCGGAAATGAT
CCTTTTGGCCACCCGAAGTCGTCCGAGGGTTGAATTAGAGTTACGAAGCT
TGTCGGTCGGATTTCCTCGTGACGAAAAATGCCTTCTTCCATTCTTCAAA
ATCCAAATATTGCAATATAGCCGCGGCTGGCGCATCCCAACAGCTTTGAC
CGACGGCAACCCTAGTCTACTGCTCTATCGCCGTGGGCTGCATCGATCTC
CGAAGAAAATACAATTGTTGCATATATGCTAGGAGGGTGTCGGCGGACTT
TCTTCTTTTGCGCTTCTTTTTCCAACAGCGTCTGCGCCGCGCCTTGGTTT
GAGTGTAGAAGCGATTTTGCGTTGTTTCTCAGTGCCGCGCTTCGGACGAC
GCTCGCCCGATGCGACCGCCCGCTTCCAGGGTAGAGCCATGTAGGTCACA
GGCATTGCCGCCCAGGTTACGGTGGGTGTGGTTGGTTCTACAGTACCTGC
TGCAACAGCGCGTCTTGTACAAGTAGAGGTTAAGGATTTAAATAGAGAAA
AATGTGTCGAAAACAACTCGACGACCAAAGTCGAAGGCAGGCTGCTTTCG
AAAGAGTTGCTCGATATCCGCCAATTGCCAACGAGAGTTCTCTGTCGTTG
AACGTTCCTCAGGCGAGAAAGGTCGTTAGCCGCCGCCCCCAGACAAGAGG
AATAGCGTAGCTTCTGTGCTGCTGCTGTGCTGTAGTACGGTGGTCGCATT
TTGGTTTGACGGGGGGGAATTGCCTAGTAAAATCAACACAAGCACATGTG
AAAGAATTTTAGCGCACAAGTAATGCGAAAACCCGCACGCGTTTGCCTGT
GAGGCCGTAGAACACCGTTCGGTATCGCTGCCGACCTATGCGAGTCAGAG
ACATCTCCTGTAGAAGGGTGGGCGGCGGTCGGAATTTCGCTGCAAGGAGT
CCTCAAGCCTGAATTCCGACAGAAGGTTAAAGAAATGAGAACCCCTTAGG
ATTCACAAGAGGGAATAATCGGTATCACGGACTTCGCGGCTTTAGAGTGG
GACCCTGTTGGTGGAAAAGAAAATCGTGTGGTATTTCGCCCGTTTTTTCC
GTCTCGGAATACAGTAGATATTTCCACGACGCTGCTCTTGCCGTCTTAAG
GCTCTCCGCCTCGTCCGCCGGTTCATAAACCAAAGCTTGGAAGTAACGCT
CGTCAGGTGCTGTCTGTACTCAACGTATTTCAGACGAAGGTGGCGCAGCC
CGAGGCCGAGACCGCTTACAGTTGCTTTTAAAAGAGCAAGGGGATGTTAA
TCTGGATGACGTGAAGAAGTACGATGATGCCGACGACGCCGACAGCGGTG
ATGACCTAGACAGCAGCGACACAGACGACGATTCGGATGACGACGAAGAA
GCATTGGAGAAGGAGCTGGAGAAGATCAGGAAGGAGCGCGAAGAAGCACG
GAAAAAGAAGGTATGCTGCATGCAGTGTTCAGGCTAGTCTACTCCACTAT
GCGACACCTGAGTTCATGCAACCTCCCCTACCGCGAAACGGAGTCGCTTG
AACTTGTACCTACCCGGTTTTATTTGGCCACCGGGCCTAAATTCTATGGC
CACGATCCCTCGCTTTTGAAGAACCGAGGAGGTGACGGTGAGGCTAGTGG
TCGTTCATTGCACTCTGTGGGAACCGAAGTATGTATCACCCAAGGCAAGT
TTCTGGCGTCGCTCGAATTTGAATTCGTTGCCGAGGTTATTGATGTCGAT
GACAAGGTGCTGCGAGCTTCTCACGATCTTGAAGCGCACGGTGTACATCC
GATCGAGCGTGACACTTCCTTACGTATCTAACCCTGTTGTGCAGCACTCG
ACTTCAACAACATATCTGTGCCTTTCCCGAGGTGCAACTTCATCTAATGT
CTTCGGAGCGAAGACTACGGCCTCTCTACCTAAAATGCTTGTGCTGGACA
TCTTTGAAGCGCTTTCTCGTAACATCCTCATTTTGGTTGACATCAGGAAC
GCGAAGATGCCGAAGATGAAGAAAAGAGGAAGCAGGTGAGCTGGCAAAAG
CCATCGGCTGTCGTCGTATGGTATTCCCGAAATTGTAACCAAGATAATTT
ACGATGCTTTTGAACAACGCTGTCTTTGAAGACATTAGCCTTGGGCGCTC
GATGCCGTTGCATGCTGACTTTGGTCTCGATAAAGCCTTGAATTTCATGT
CATGTTCTTTTCCTGCTCCTTCGTACTTCGAAATACGAAGCAAGAAACCC
CAACATCGGTATGGCGTACCGTACGTTTCTTCCTGGCGATTATCAGGAAG
CAGCAATGACCGGCAACATCTTACTCACTCAGAGTAACAGCAGCTCACAG
GTCAAGAGAAGGTGAGACCTCCTCCGTCACAAAGATTTACCGATTTTGCC
CTGCACCGTGGGTCGTACCAATGGATGATGTCATCTAGTATAGTCAAGAA
ATAGGTGGTCGCTAAGAGTGCAACACTTGACTTTTAAACAGGGTCGTGAA
TCGGATCCGATTCACCTGATTACATCGGAACAATGTAATCAATATCGGAA
TCGGAAAACAAGGATGATGTTCCTTCCGATGTTAAGCCGATTTCCAGCCG
ATATATGTGAACTAGAGTGAAAGCGGCTGTTACTGAAGCGCAGCAACCTT
CTACACCCACGGAGGGGAACCTCCTGGCTTACAGGAGGCTGTATGCACAT
ACGCCACAGATGTTATGGGTGGGACGACCTTGGGACCCAAAACACAATAT
TCAATATTCGTGTAGGGGGGGGTGTTCTCTTTTGCATTTGTGTGTGACCC
GTAAAGCCCAGCGGCGTTGCGCACACGCTGCGTGCCTACTGCCTTATCAT
GTGCGAAGAAGTGTCCCAGGGCCAACAGCAACCTCAAACAAGCTCTACGG
GGCTAGAGAGCGTCGGCGGAAGTAGTGATGCGGTGGCCGCGGGCGCAACC
GCGAAAGAGCGAGCAGCCGCGGCAGAACTCGCGACAAGACTTGACCGGAT
ACACAAAATGATGAAGAAGGCGAACCCGGATGGTGCTTAGCCCCATTACT
TTGGTAGCCAGCTGTCCGACTGTTCCTATGATAGGTAGCAATACATGCCT
ACACTTGTTCTTTTTTTGTTTTGTTTTCCATGTTTTCCCATTTTCTGCAT
GTAGTGAACTTCACACCGGTTACAACAACCCTCGATTTCGCACTGATTTT
GAAGGCAATGAAGCCAAATGGCCCAACTAATTCTGCCTCCGCTCACCAGC
CGAGGGGGGCGGGGAGGCTCGCTCGGCTCGCCGATAAATGGCGCTTTTAT
CGGCCGACTCTCAAAGACCGGGAAACCCAGCCGATTTACAACCCTACTAT
TCAAAGCACACCTTGCACTGTACTCTCTGCAATAGTAACATTTGAACGTG
TGAGACGTATGATAAATCGAAATTTTGCTCACGTCCTATTCATGTACTGA
CATATGACCTAACACAATCGTCGTCCGTCGATTTTGGTCACAGATGGAAT
GATGACGTGGTCTTCAAAGGACAAGCGAGGACGGAACCAGAGACAAAGAA
GAGATTTGTGAACGACACGATCCGTAATGACTTCCACCGCCGCTTTCTGA
CCAAATACATCAAGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1522:4942..10158-

>mRNA_H-canaliculatus_F_contig1522.3890.1 ID=mRNA_H-canaliculatus_F_contig1522.3890.1|Name=mRNA_H-canaliculatus_F_contig1522.3890.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1416bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1522:4942..10158- (Hapterophycus canaliculatus Oshoro5f female)
ATGACAACCGCCCACCGACCTACATGGGTAGCGGCCCAAGCTGCTGCATC
CGATGTCGGGAACTGGTCCACTGGAGATGACAACCGCCCACCGACCTACA
TGGGTAGCGGCCCAAGCTGCTGCATCCGATGTCGGGAACTGGTCCACTGG
AGGACAAGCAAGTCAAGCAGTTTCTTCGTGGGATTTGCCAAGCCAAACTA
CCCTAAAATTTAGGAAAACGGGCCAAAACAGCGAGGCGGAACTGCGCAAG
CGGGATGTTCGCGCCGAGGTCGAAGACAGCGAACGACGTGCCTTGGATGA
GAAACCGGCAACAATCGATCGACGCTACGGACAAGCAAGTCAAGCAGTTT
CTTCGTGGGATTTGCCAAGCCAAACTACCCTAAAATTTAGGAAAACGGGC
CAAAACAGCGAGGCGGAACTGCGCAAGCGGGATGTTCGCGCCGAGGTCGA
AGACAGCGAACGACGTGCCTTGGATGAGAAACCGGCAACAATCGATCGAC
GCTACGACGAAGGTGGCGCAGCCCGAGGCCGAGACCGCTTACAGTTGCTT
TTAAAAGAGCAAGGGGATGTTAATCTGGATGACGTGAAGAAGTACGATGA
TGCCGACGACGCCGACAGCGGTGATGACCTAGACAGCAGCGACACAGACG
ACGATTCGGATGACGACGAAGAAGCATTGGAGAAGGAGCTGGAGAAGATC
AGGAAGGAGCGCGAAGAAGCACGGAAAAAGAAGACGAAGGTGGCGCAGCC
CGAGGCCGAGACCGCTTACAGTTGCTTTTAAAAGAGCAAGGGGATGTTAA
TCTGGATGACGTGAAGAAGTACGATGATGCCGACGACGCCGACAGCGGTG
ATGACCTAGACAGCAGCGACACAGACGACGATTCGGATGACGACGAAGAA
GCATTGGAGAAGGAGCTGGAGAAGATCAGGAAGGAGCGCGAAGAAGCACG
GAAAAAGAAGGAACGCGAAGATGCCGAAGATGAAGAAAAGAGGAAGCAGG
AACGCGAAGATGCCGAAGATGAAGAAAAGAGGAAGCAGGAAGCAGCAATG
ACCGGCAACATCTTACTCACTCAGAGTAACAGCAGCTCACAGGTCAAGAG
AAGGAAGCAGCAATGACCGGCAACATCTTACTCACTCAGAGTAACAGCAG
CTCACAGGTCAAGAGAAGATGGAATGATGACGTGGTCTTCAAAGGACAAG
CGAGGACGGAACCAGAGACAAAGAAGAGATTTGTGAACGACACGATCCGT
AATGACTTCCACCGCCGCTTTCTGACCAAATACATCAAGTAGATGGAATG
ATGACGTGGTCTTCAAAGGACAAGCGAGGACGGAACCAGAGACAAAGAAG
AGATTTGTGAACGACACGATCCGTAATGACTTCCACCGCCGCTTTCTGAC
CAAATACATCAAGTAG
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