mRNA_H-canaliculatus_F_contig15214.3888.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15214.3888.1
Unique NamemRNA_H-canaliculatus_F_contig15214.3888.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15214.3888.1 vs. uniprot
Match: D8LI53_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI53_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 2.140e-45
Identity = 69/87 (79.31%), Postives = 80/87 (91.95%), Query Frame = 3 
Query:    3 FNYDNGVGSRVDRFKIDLYSVGGSGDCGTWVESLCDKPSIGCKDSMGDYDIEIPATIPDGEYSIRVGRFQDDSLYGCSDTFEILGSA 263
            F+YDNGVGSRVDRFKIDLYS+GG+GDCGTWV +LCDK +IGCKDSMGDYD+EIP T+ DG YSIRVGRF+DD+LYGCS  FEI+GS+
Sbjct:   72 FDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPDTVVDGMYSIRVGRFEDDALYGCSGEFEIVGSS 158
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BLAST of mRNA_H-canaliculatus_F_contig15214.3888.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 8.130e-44
Identity = 69/87 (79.31%), Postives = 80/87 (91.95%), Query Frame = 3 
Query:    3 FNYDNGVGSRVDRFKIDLYSVGGSGDCGTWVESLCDKPSIGCKDSMGDYDIEIPATIPDGEYSIRVGRFQDDSLYGCSDTFEILGSA 263
            F+YDNGVGSRVDRFKIDLYS+GG+GDCGTWV +LCDK +IGCKDSMGDYD+EIP T+ DG YSIRVGRF+DD+LYGCS  FEI+GS+
Sbjct:  113 FDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVGSS 199
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15214.3888.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 6.320e-40
Identity = 62/85 (72.94%), Postives = 71/85 (83.53%), Query Frame = 3 
Query:    3 FNYDNGVGSRVDRFKIDLYSVGGSGDCGTWVESLCDKPSIGCKDSMGDYDIEIPATIPDGEYSIRVGRFQDDSLYGCSDTFEILG 257
            F+YDNGVGS+VDRF IDLY   G GDCGT+V S+CDKPSIGCKDSMGDYD+EIPA    G+Y IRVGRF+D+ LYGCS TF I+G
Sbjct:  162 FDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMG 246
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15214.3888.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 7.230e-38
Identity = 60/85 (70.59%), Postives = 72/85 (84.71%), Query Frame = 3 
Query:    3 FNYDNGVGSRVDRFKIDLYSVGGSGDCGTWVESLCDKPSIGCKDSMGDYDIEIPATIPDGEYSIRVGRFQDDSLYGCSDTFEILG 257
            F+YDNG+GS V+RF IDLYS GGSGDCGT+V ++CDKPSIGCKDS GDYD+ IP+    G YSIRVG F+DD +YGCSD+FEI+G
Sbjct:  160 FDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVG 244
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15214.3888.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.820e-37
Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 3 
Query:    3 FNYDNGVGSRVDRFKIDLYSVGGSGDCGTWVESLCDKPSIGCKDSMGDYDIEIPATIPDGEYSIRVGRFQDDSLYGCSDTFEILGS 260
            F+YDNG+GS V RF IDLYS  GSGDCGT++ +LCDKP+IGCKDSMGDYD+EIP     G Y+IRVG F+DDS+YGCSD FEILG+
Sbjct:  151 FDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGA 236
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15214.3888.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 2.980e-37
Identity = 60/83 (72.29%), Postives = 67/83 (80.72%), Query Frame = 3 
Query:    3 FNYDNGVGSRVDRFKIDLYSVGGSGDCGTWVESLCDKPSIGCKDSMGDYDIEIPATIPDGEYSIRVGRFQDDSLYGCSDTFEI 251
            F+YDNGVGS VDRF IDLY   G GDCGT+V+S+CDKP+IGCKDSMGDYD+EIP     GEY IRV RF+DDSLY CS TF I
Sbjct:  163 FDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15214.3888.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.340e-36
Identity = 59/86 (68.60%), Postives = 72/86 (83.72%), Query Frame = 3 
Query:    3 FNYDNGVGSRVDRFKIDLYSVGGSGDCGTWVESLCDKPSIGCKDSMGDYDIEIPATIPDGEYSIRVGRFQDDSLYGCSDTFEILGS 260
            F+YDNG+GS V RF IDLY+  GSGDCGT++ +LCDKP+IGCKDSMGDYD+EIP     G Y+IRVG F+D+S+YGCSD FEILG+
Sbjct:  164 FDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGA 249
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15214.3888.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 4.180e-34
Identity = 56/85 (65.88%), Postives = 68/85 (80.00%), Query Frame = 3 
Query:    3 FNYDNGVGSRVDRFKIDLYSVGGSGDCGTWVESLCDKPSIGCKDSMGDYDIEIPATIPDGEYSIRVGRFQDDSLYGCSDTFEILG 257
            F++DNG GS V+RF IDLY  GGSGDCGT+V S+CDK SIGCKDS GDYD+ IP+    G YSIRVG F+D  ++GCSD+FEI+G
Sbjct:  160 FDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIG 244
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15214.3888.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 6.040e-34
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 3 
Query:    3 FNYDNGVGSRVDRFKIDLYSVGGSGDCGTWVESLCDKPSIGCKDSMGDYDIEIPATIPDGEYSIRVGRFQDDSLYGCSDTFEI 251
            ++Y+NG GS  DRF +DLY VGG+GDCGT+V +LCD+PSIGC DS GDYD+EIP+  P G YSIRVG F D+ +Y CSDTFE+
Sbjct:  160 WDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15214.3888.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 3.770e-32
Identity = 54/85 (63.53%), Postives = 68/85 (80.00%), Query Frame = 3 
Query:    3 FNYDNGVGSRVDRFKIDLYSVG-GSGDCGTWVESLCDKPSIGCKDSMGDYDIEIPATIPDGEYSIRVGRFQDDSLYGCSDTFEIL 254
            ++Y+NG+GS  DRF IDLYS G G+GDCGT+V +LCDKPSIGC DS GDYD+EIP+  P G YS+RVG F DD ++ CS+ FEI+
Sbjct:  160 WDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV 244
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15214.3888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LI53_ECTSI2.140e-4579.31EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JEJ8_9PHAE8.130e-4479.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL2_ECTSI6.320e-4072.94EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D7G3E8_ECTSI7.230e-3870.59Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
D8LI46_ECTSI1.820e-3770.93EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JRG9_9PHAE2.980e-3772.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFT9_9PHAE1.340e-3668.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP11_9PHAE4.180e-3465.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY62_9PHAE6.040e-3465.06GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
D7G3F0_ECTSI3.770e-3263.53EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15214contigH-canaliculatus_F_contig15214:344..1775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size434
Cds size423
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15214.3888.1prot_H-canaliculatus_F_contig15214.3888.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15214 344..1766 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929261.0882967-CDS-H-canaliculatus_F_contig15214:343..6371622929261.0882967-CDS-H-canaliculatus_F_contig15214:343..637Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15214 344..637 -
1696845740.6062582-CDS-H-canaliculatus_F_contig15214:343..6371696845740.6062582-CDS-H-canaliculatus_F_contig15214:343..637Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15214 344..637 -
1622929261.1034834-CDS-H-canaliculatus_F_contig15214:1637..17661622929261.1034834-CDS-H-canaliculatus_F_contig15214:1637..1766Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15214 1638..1766 -
1696845740.6166632-CDS-H-canaliculatus_F_contig15214:1637..17661696845740.6166632-CDS-H-canaliculatus_F_contig15214:1637..1766Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15214 1638..1766 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929261.1186814-UTR-H-canaliculatus_F_contig15214:1766..17751622929261.1186814-UTR-H-canaliculatus_F_contig15214:1766..1775Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15214 1767..1775 -
1696845740.6275613-UTR-H-canaliculatus_F_contig15214:1766..17751696845740.6275613-UTR-H-canaliculatus_F_contig15214:1766..1775Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15214 1767..1775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15214.3888.1

>prot_H-canaliculatus_F_contig15214.3888.1 ID=prot_H-canaliculatus_F_contig15214.3888.1|Name=mRNA_H-canaliculatus_F_contig15214.3888.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=141bp
MTTGSALVSTASRSISTRSEAAATAVPGSKASAISLPSAARTRWGTTISR
SPPRSRTANTRSAWAASRTTACTAARTHSRSSVRRETGPEQAAGAAALAE
AGWATAAETAAATAAETAAAPAVETAAAWALAAAAAALAEA
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mRNA from alignment at H-canaliculatus_F_contig15214:344..1775-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15214.3888.1 ID=mRNA_H-canaliculatus_F_contig15214.3888.1|Name=mRNA_H-canaliculatus_F_contig15214.3888.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1432bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15214:344..1775- (Hapterophycus canaliculatus Oshoro5f female)
AGTTCAACTATGACAACGGGGTCGGCTCTCGTGTCGACCGCTTCAAGATC
GATCTCTACTCGGTCGGAGGCAGCGGCGACTGCGGTACCTGGGTCGAAAG
CCTCTGCGATAAGCCTTCCATCGGCTGCAAGGACTCGAGTGAGTACAATA
GCGGGTCCGTTGTTCGTCCTTTTCCTTCCTCTTTCCTTCCTCTTTCCTTC
CTCTTTCCTTCCTCTTTCCTTCCTCTTTCCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTGTTTTTCTTCCAGTCTTTTTGCATTCTCATACG
TTACCAAACGTCCGATGGTTGGATCACACCAGCACCCGGAAGCCGTGTTT
CGTGCGTGCGTCATCATACGCACGCAGTATGAACCATGCTCATGTTTTTT
TTCGTAGCGCCGGTGCCTACACGCGGCGCGGTTCGTTTGTTCTCTGCCGC
CGCCTCCTCGGTGCCTGTCGCCCGGATCCCGTTTCGTCCCTCGCGCGACG
GCCTCGACCGCGAGGTTTCTCCCTCTGGCCTCCGTTTCCCCCGACGCTCG
GCGCCACCGACCTGCCGGGGCCGTCTCTCAATTCCCCCTCCCCGCCTTGT
CCGAGTCGCTTCCCTGCCGTACCCTCCGCCCCTTCCCCCCCCCGCGCGAT
AGCCGCACCCATCGTCGTTCGGAGGAAGCCGTCTCGCCGACGCCGGCGTA
GAGTAGATCCGCCCGTTCGCCGCAAGAAACCAGTCCGCTCACTGTCATAA
ACTATCAACACGAATCCGAGAACAGACACCGAACGCGTAGCGGCGATGCT
TGATCGTCAGGGCAGAATCGGCGGCCGCTCTTCGCGCAGACGGCGCGACA
CGGCCTGCCGGTCGTTTGCCTTTTTTGCTTGCTGCTCCCAAGCCAAGTCC
CGGACCGGTCGTCCCTGTTGCACCCATCCCTTTGCGCGGGGAAGAGAAGC
TCGGCCGCAGCCAGGTGCTTAGTCGTCGCAGGACTATCTGCGATCCTCTT
TTTTAACTCCTCGCCGCCCGTTTTCCGGCCCCGTTCAAACTTTTAAAACG
CTCGATGCCGGGACCGACCGACCGACCGACCGACCGACTACCCGCCCGCG
CGCGCAAACAACAACGACGACGACGACGACGGCGGTAGTGGGGGACTACG
ATATCGAGATCCCCGCCACGATCCCGGACGGCGAATACTCGATCCGCGTG
GGCCGCTTCCAGGACGACAGCCTGTACGGCTGCTCGGACACATTCGAGAT
CCTCGGTTCGGCGGGAGACGGGTCCGGAGCAGGCAGCGGGAGCAGCAGCG
CTAGCGGAGGCGGGGTGGGCTACGGCAGCGGAGACGGCAGCGGCTACGGC
AGCGGAGACGGCAGCGGCTCCGGCAGTGGAGACGGCAGCGGCCTGGGCGC
TGGCAGCGGCAGCAGCAGCGCTAGCGGAGGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15214:344..1775-

>mRNA_H-canaliculatus_F_contig15214.3888.1 ID=mRNA_H-canaliculatus_F_contig15214.3888.1|Name=mRNA_H-canaliculatus_F_contig15214.3888.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=846bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15214:344..1775- (Hapterophycus canaliculatus Oshoro5f female)
ATGACAACGGGGTCGGCTCTCGTGTCGACCGCTTCAAGATCGATCTCTAC
TCGGTCGGAGGCAGCGGCGACTGCGGTACCTGGGTCGAAAGCCTCTGCGA
TAAGCCTTCCATCGGCTGCAAGGACTCGAATGACAACGGGGTCGGCTCTC
GTGTCGACCGCTTCAAGATCGATCTCTACTCGGTCGGAGGCAGCGGCGAC
TGCGGTACCTGGGTCGAAAGCCTCTGCGATAAGCCTTCCATCGGCTGCAA
GGACTCGATGGGGGACTACGATATCGAGATCCCCGCCACGATCCCGGACG
GCGAATACTCGATCCGCGTGGGCCGCTTCCAGGACGACAGCCTGTACGGC
TGCTCGGACACATTCGAGATCCTCGGTTCGGCGGGAGACGGGTCCGGAGC
AGGCAGCGGGAGCAGCAGCGCTAGCGGAGGCGGGGTGGGCTACGGCAGCG
GAGACGGCAGCGGCTACGGCAGCGGAGACGGCAGCGGCTCCGGCAGTGGA
GACGGCAGCGGCCTGGGCGCTGGCAGCGGCAGCAGCAGCGCTAGCGGAGG
CGTGGGGGACTACGATATCGAGATCCCCGCCACGATCCCGGACGGCGAAT
ACTCGATCCGCGTGGGCCGCTTCCAGGACGACAGCCTGTACGGCTGCTCG
GACACATTCGAGATCCTCGGTTCGGCGGGAGACGGGTCCGGAGCAGGCAG
CGGGAGCAGCAGCGCTAGCGGAGGCGGGGTGGGCTACGGCAGCGGAGACG
GCAGCGGCTACGGCAGCGGAGACGGCAGCGGCTCCGGCAGTGGAGACGGC
AGCGGCCTGGGCGCTGGCAGCGGCAGCAGCAGCGCTAGCGGAGGCG
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