mRNA_H-canaliculatus_F_contig1521.3887.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1521.3887.1
Unique NamemRNA_H-canaliculatus_F_contig1521.3887.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1521.3887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1521contigH-canaliculatus_F_contig1521:24307..25450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size288
Cds size180
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1521.3887.1prot_H-canaliculatus_F_contig1521.3887.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1521 24375..25410 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929260.5820687-UTR-H-canaliculatus_F_contig1521:24306..243741622929260.5820687-UTR-H-canaliculatus_F_contig1521:24306..24374Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1521 24307..24374 -
1696845740.38485-UTR-H-canaliculatus_F_contig1521:24306..243741696845740.38485-UTR-H-canaliculatus_F_contig1521:24306..24374Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1521 24307..24374 -
1622929260.626612-UTR-H-canaliculatus_F_contig1521:25410..254501622929260.626612-UTR-H-canaliculatus_F_contig1521:25410..25450Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1521 25411..25450 -
1696845740.4127603-UTR-H-canaliculatus_F_contig1521:25410..254501696845740.4127603-UTR-H-canaliculatus_F_contig1521:25410..25450Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1521 25411..25450 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929260.5965421-CDS-H-canaliculatus_F_contig1521:24374..245061622929260.5965421-CDS-H-canaliculatus_F_contig1521:24374..24506Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1521 24375..24506 -
1696845740.3937457-CDS-H-canaliculatus_F_contig1521:24374..245061696845740.3937457-CDS-H-canaliculatus_F_contig1521:24374..24506Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1521 24375..24506 -
1622929260.612598-CDS-H-canaliculatus_F_contig1521:25362..254101622929260.612598-CDS-H-canaliculatus_F_contig1521:25362..25410Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1521 25363..25410 -
1696845740.4028714-CDS-H-canaliculatus_F_contig1521:25362..254101696845740.4028714-CDS-H-canaliculatus_F_contig1521:25362..25410Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1521 25363..25410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1521.3887.1

>prot_H-canaliculatus_F_contig1521.3887.1 ID=prot_H-canaliculatus_F_contig1521.3887.1|Name=mRNA_H-canaliculatus_F_contig1521.3887.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=60bp
MELIDVHQGEIFIAGQSVHRAGEIGTKPLDQFRRSLENWVHRCTTVVASF
VLISTSALP*
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mRNA from alignment at H-canaliculatus_F_contig1521:24307..25450-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1521.3887.1 ID=mRNA_H-canaliculatus_F_contig1521.3887.1|Name=mRNA_H-canaliculatus_F_contig1521.3887.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1144bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1521:24307..25450- (Hapterophycus canaliculatus Oshoro5f female)
TGAGCCAAGCTGAGCCGAGCATCAACATCTACGTAGCGGTATGGAGCTGA
TCGACGTTCACCAAGGGGAAATTTTCATCGCAGGACAGGTGAGCTGGCGA
ATGAGGTCTGTTCAACGTTTCTTTCTCCTACCTCAAATCCTCAAACGAAA
ACTATGCTACAAGCACAACAGCAGGCAACCATACCTAATTCCTTCCTCAT
ATGATGTAAGTGCCGAAGCGTATCCAGCTCTCTGGCTGACTCTATTCAAA
TCGGCATGGGCAAAAGAGGAGAGACAGCTGTGTTGCTGTGCCCGAGCCGG
CGATGTCATCGCGCTGCAGCTCGGAGCTAAAGAGGGTTTGCACTATATTT
CTGCGATTGTATGTATGTAGGCTTGCAGCGGAAGGCCAAATGTCCGATGT
CTCTGTTCTCGTGCATCCTTTTCGGCACTTGTACTGCTAGAGGTACTAGT
AGGAACATTTTTCTTTTTCAGTACTTGTAGTCCCCGTCTACTTGCAGCCA
CCTGCTAGGGGTCGCTTCGACGAAGTAGGCAAGAACACATGAGGTTTTGT
CACGTCGCGACCCGTAACACAAGGATGCACCCTTCTCCACTTTCTGATGG
GAGATCAATCCGGGCGCACAAACATCAGGTCATACCGTGCTGACTCGCTC
TTTTTCTCATCTTCCGATTCATAGAGGGCATTCTGAATGCTGAAACACTC
TTGGGTGAAGGGCCTCTGAATGACACCAGCCAGCTCGGCTCGTGGGTTCA
AGCCCCATACACCATTGGCTGTTGTCCAACGCCTTTCAGCAGTATACCAC
GGCGGCGGCGCTGGCACGTCACGTTCACTGTGCAGCACAGCCGCACTGGA
TCATAAAAATACCCGGCTGCAAGTACGAGTACATGTAATATGTGCCAACC
CGAATTCTTGCCCGCTGCCGTTCCTCTGTTCCTCATACTTGCAGTCCGTG
CATCGTGCAGGAGAAATCGGAACTAAACCCTTGGACCAGTTTCGTCGCTC
GCTGGAAAATTGGGTCCACAGATGCACAACAGTAGTCGCATCATTTGTAT
TGATCTCTACAAGTGCTCTTCCGTAGATTTTTTTGTCACGGCTACAAAAA
GGTACCTACACCCCGCCGTTCCATTGGATTGTTCCTCTCAAGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1521:24307..25450-

>mRNA_H-canaliculatus_F_contig1521.3887.1 ID=mRNA_H-canaliculatus_F_contig1521.3887.1|Name=mRNA_H-canaliculatus_F_contig1521.3887.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=360bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1521:24307..25450- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGCTGATCGACGTTCACCAAGGGGAAATTTTCATCGCAGGACAGAT
GGAGCTGATCGACGTTCACCAAGGGGAAATTTTCATCGCAGGACAGTCCG
TGCATCGTGCAGGAGAAATCGGAACTAAACCCTTGGACCAGTTTCGTCGC
TCGCTGGAAAATTGGGTCCACAGATGCACAACAGTAGTCGCATCATTTGT
ATTGATCTCTACAAGTGCTCTTCCGTAGTCCGTGCATCGTGCAGGAGAAA
TCGGAACTAAACCCTTGGACCAGTTTCGTCGCTCGCTGGAAAATTGGGTC
CACAGATGCACAACAGTAGTCGCATCATTTGTATTGATCTCTACAAGTGC
TCTTCCGTAG
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