mRNA_H-canaliculatus_F_contig15205.3882.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15205.3882.1
Unique NamemRNA_H-canaliculatus_F_contig15205.3882.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15205.3882.1 vs. uniprot
Match: A0A6H5JYB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB8_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 1.140e-71
Identity = 176/263 (66.92%), Postives = 196/263 (74.52%), Query Frame = 1 
Query:    1 QALVEISTSGANPSAAAATSLIPTRGPRRAAVVACSAGLVRDLIASCVALRAENAHASERLSAALASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSEGGRNPAEEGGDHGQLERRKRLDDGATHGASEVGAKVFGQLLSLSVFGFLGPQSLEESRKVSREWRDKCAWDCSWSNLCASRWRLGPEQRHAEVWRAPDRRSNRNDGXXXXXXXXXXXXXXXPLPPSWRSIYGRLHRELRGPMGAFSPSHMVIGKSIQE 789
            +ALVEISTSGAN SA+AATSLIPTRGPRRAAVVACSAGLVRDLI++C+ALR + A    RL+ AL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     G +  + GG  G +         AT G +   AKVFGQLLSLSVFGFLGPQSLEE+ KVSR+WRDKC WDC+WS LC SRWRLGPEQRHAEVWR PD        XXXX             PP+W+SIYGRLHR++  P G F PSHMVIG+S+QE
Sbjct:   74 EALVEISTSGANLSASAATSLIPTRGPRRAAVVACSAGLVRDLISTCIALRKDKASLLARLAEALRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSHGRDSGGASGAV---------ATAGVASS-AKVFGQLLSLSVFGFLGPQSLEEASKVSRDWRDKCTWDCNWSTLCVSRWRLGPEQRHAEVWRVPDDADGTGKXXXXXKGVARSVLSPPAPPPTWQSIYGRLHRDVHAPSGTFCPSHMVIGRSVQE 326
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BLAST of mRNA_H-canaliculatus_F_contig15205.3882.1 vs. uniprot
Match: D8LR75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR75_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 1.130e-68
Identity = 175/269 (65.06%), Postives = 191/269 (71.00%), Query Frame = 1 
Query:    1 QALVEISTSGANPSAAAATSLIPTRGPRRAAVVACSAGLVRDLIASCVALRAENAHASERLSAALASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSEGGRNPAEEGGDHGQLERRKRLDDGATHGASEV------GAKVFGQLLSLSVFGFLGPQSLEESRKVSREWRDKCAWDCSWSNLCASRWRLGPEQRHAEVWRAPDRRSNRNDGXXXXXXXXXXXXXXXPLPPSWRSIYGRLHRELRGPMGAFSPSHMVIGKSIQE 789
            +ALVEISTSGAN SA+AATSLIPTRGPRRAAVVACSAGLVRDLI++C+ALR + A  S R + AL    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               HG       LD G   G +E        AKVFGQLLSLSVFGFLGPQSLEE+ KVSREWRDKC WDC+WS LC SRWRLGPEQRHAEVWR PD      DG   XXX           PP+W+SIYGRLH ++  P G F PSHMVIG+S+QE
Sbjct:  219 EALVEISTSGANLSASAATSLIPTRGPRRAAVVACSAGLVRDLISTCIALRKDKASLSARFAEALRQLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS---------HG-------LDSGGAGGGAEAVVGVASSAKVFGQLLSLSVFGFLGPQSLEEASKVSREWRDKCTWDCNWSTLCVSRWRLGPEQRHAEVWRVPDDA----DGKGKXXXVARSAVSPPAPPPTWQSIYGRLHGDVHAPSGTFCPSHMVIGRSVQE 467
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BLAST of mRNA_H-canaliculatus_F_contig15205.3882.1 vs. uniprot
Match: A0A835YLV5_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV5_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 9.200e-14
Identity = 49/142 (34.51%), Postives = 64/142 (45.07%), Query Frame = 1 
Query:  400 ASEVGAKVFGQLLSLSVFGFLGPQSLEESRKVSREWRDKCAWDCSWSNLCASRWRLGPEQRHAEVWRA-----------------PDRRSNR----NDGXXXXXXXXXXXXXXXPLPP-SWRSIYGRLHRELRGPMGAFSPS 759
            A    A VFG   +L +  FL   SLE +R+  R+WR +CAWDC+W+  CA+RWRL  + R  E W+A                 P+ R+       +                  PP SWR +Y  LHRELR P GA   S
Sbjct:  285 ADSAAAAVFGASCALPIHAFLDAASLEAARRACRDWRARCAWDCTWARQCAARWRLRGQDRALEAWQARFSRVSNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAAPPVSWREVYCALHRELRLPDGALCVS 426
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15205.3882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JYB8_9PHAE1.140e-7166.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LR75_ECTSI1.130e-6865.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YLV5_9STRA9.200e-1434.51BHLH domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15205contigH-canaliculatus_F_contig15205:753..1837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size789
Cds size789
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929260.519139-CDS-H-canaliculatus_F_contig15205:752..12851622929260.519139-CDS-H-canaliculatus_F_contig15205:752..1285Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15205 753..1285 +
1696845740.365901-CDS-H-canaliculatus_F_contig15205:752..12851696845740.365901-CDS-H-canaliculatus_F_contig15205:752..1285Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15205 753..1285 +
1622929260.5355568-CDS-H-canaliculatus_F_contig15205:1581..18371622929260.5355568-CDS-H-canaliculatus_F_contig15205:1581..1837Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15205 1582..1837 +
1696845740.3756073-CDS-H-canaliculatus_F_contig15205:1581..18371696845740.3756073-CDS-H-canaliculatus_F_contig15205:1581..1837Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15205 1582..1837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15205.3882.1prot_H-canaliculatus_F_contig15205.3882.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15205 753..1837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15205.3882.1

>prot_H-canaliculatus_F_contig15205.3882.1 ID=prot_H-canaliculatus_F_contig15205.3882.1|Name=mRNA_H-canaliculatus_F_contig15205.3882.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=263bp
QALVEISTSGANPSAAAATSLIPTRGPRRAAVVACSAGLVRDLIASCVAL
RAENAHASERLSAALASAAAAAQQQQQQQQQQQQQQQQQRRQRQQEAGAS
SPSSEGGRNPAEEGGDHGQLERRKRLDDGATHGASEVGAKVFGQLLSLSV
FGFLGPQSLEESRKVSREWRDKCAWDCSWSNLCASRWRLGPEQRHAEVWR
APDRRSNRNDGGSAAAAAGRSVVSPPPLPPSWRSIYGRLHRELRGPMGAF
SPSHMVIGKSIQE
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mRNA from alignment at H-canaliculatus_F_contig15205:753..1837+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15205.3882.1 ID=mRNA_H-canaliculatus_F_contig15205.3882.1|Name=mRNA_H-canaliculatus_F_contig15205.3882.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1085bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15205:753..1837+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGCCCTCGTGGAGATCAGCACTAGCGGCGCAAACCCGTCCGCGGCGGC
GGCTACGAGCCTCATTCCGACCCGCGGCCCCCGGCGCGCCGCCGTCGTCG
CCTGCAGTGCCGGCCTCGTTAGAGATCTCATCGCGTCGTGCGTCGCTCTC
CGTGCGGAGAATGCCCACGCCTCGGAACGACTGTCCGCGGCGCTCGCTTC
AGCGGCGGCGGCGGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCGGCGGCAGCGGCAGCAGGAGGCCGGGGCTTCG
AGTCCATCCTCGGAGGGGGGCAGGAACCCTGCGGAAGAGGGCGGCGACCA
CGGCCAGCTCGAGCGGAGGAAGAGGCTCGACGACGGAGCCACTCACGGTG
CGAGCGAGGTGGGCGCGAAGGTGTTCGGGCAGCTGCTGTCCCTGTCGGTG
TTCGGCTTCCTCGGGCCCCAGTCTCTGGAGGAGAGCCGGAAGGTGTCGCG
CGAGTGGAGGGACAAATGTGCTTGGGACTGCAGGTGAGTCGGCGGTCACA
CCCGTGCTCGCACCCGGCTGCGTCTTCCAAAGTCTGGCCGGGGTAGAACC
GGCGATGGCTGGGGTTTCAGCCCCGTCGGGGCTCAACGCAGGACTTCCCC
AGCCCGCCTCCTCGGCCCCCGTCTCCGGCCCACCTCCGTGGTTGCCGGTA
TTTTTCGCGCATGCCGTCTTTTCTCTCTCTCTCCTCACGCCGCGCTCCTG
CTTCCTCCGCCCTTCGCTCTTCACCTTCTGCGCCCTCTTTTCCTTTCCCC
CGGTTGTCCCGCAACGAACCAACCACCAGCTGGAGCAACCTGTGCGCTTC
TCGATGGAGGCTCGGGCCCGAGCAGCGCCACGCGGAAGTCTGGCGTGCCC
CCGACCGAAGAAGCAACAGAAACGACGGCGGTAGTGCTGCGGCGGCGGCG
GGAAGGTCCGTGGTTTCCCCCCCGCCCCTCCCTCCGTCGTGGCGGTCGAT
CTACGGCCGCCTCCACCGGGAGCTGCGCGGGCCGATGGGGGCTTTCTCCC
CCTCGCACATGGTCATCGGGAAGAGCATCCAGGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15205:753..1837+

>mRNA_H-canaliculatus_F_contig15205.3882.1 ID=mRNA_H-canaliculatus_F_contig15205.3882.1|Name=mRNA_H-canaliculatus_F_contig15205.3882.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1578bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15205:753..1837+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGCCCTCGTGGAGATCAGCACTAGCGGCGCAAACCCGTCCGCGGCGGC
GGCTACGAGCCTCATTCCGACCCGCGGCCCCCGGCGCGCCGCCGTCGTCG
CCTGCAGTGCCGGCCTCGTTAGAGATCTCATCGCGTCGTGCGTCGCTCTC
CGTGCGGAGAATGCCCACGCCTCGGAACGACTGTCCGCGGCGCTCGCTTC
AGCGGCGGCGGCGGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCGGCGGCAGCGGCAGCAGGAGGCCGGGGCTTCG
AGTCCATCCTCGGAGGGGGGCAGGAACCCTGCGGAAGAGGGCGGCGACCA
CGGCCAGCTCGAGCGGAGGAAGAGGCTCGACGACGGAGCCACTCACGGTG
CGAGCGAGGTGGGCGCGAAGGTGTTCGGGCAGCTGCTGTCCCTGTCGGTG
TTCGGCTTCCTCGGGCCCCAGTCTCTGGAGGAGAGCCGGAAGGTGTCGCG
CGAGTGGAGGGACAAATGTGCTTGGGACTGCAGCAGGCCCTCGTGGAGAT
CAGCACTAGCGGCGCAAACCCGTCCGCGGCGGCGGCTACGAGCCTCATTC
CGACCCGCGGCCCCCGGCGCGCCGCCGTCGTCGCCTGCAGTGCCGGCCTC
GTTAGAGATCTCATCGCGTCGTGCGTCGCTCTCCGTGCGGAGAATGCCCA
CGCCTCGGAACGACTGTCCGCGGCGCTCGCTTCAGCGGCGGCGGCGGCGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CGGCGGCAGCGGCAGCAGGAGGCCGGGGCTTCGAGTCCATCCTCGGAGGG
GGGCAGGAACCCTGCGGAAGAGGGCGGCGACCACGGCCAGCTCGAGCGGA
GGAAGAGGCTCGACGACGGAGCCACTCACGGTGCGAGCGAGGTGGGCGCG
AAGGTGTTCGGGCAGCTGCTGTCCCTGTCGGTGTTCGGCTTCCTCGGGCC
CCAGTCTCTGGAGGAGAGCCGGAAGGTGTCGCGCGAGTGGAGGGACAAAT
GTGCTTGGGACTGCAGCTGGAGCAACCTGTGCGCTTCTCGATGGAGGCTC
GGGCCCGAGCAGCGCCACGCGGAAGTCTGGCGTGCCCCCGACCGAAGAAG
CAACAGAAACGACGGCGGTAGTGCTGCGGCGGCGGCGGGAAGGTCCGTGG
TTTCCCCCCCGCCCCTCCCTCCGTCGTGGCGGTCGATCTACGGCCGCCTC
CACCGGGAGCTGCGCGGGCCGATGGGGGCTTTCTCCCCCTCGCACATGGT
CATCGGGAAGAGCATCCAGGAGCTGGAGCAACCTGTGCGCTTCTCGATGG
AGGCTCGGGCCCGAGCAGCGCCACGCGGAAGTCTGGCGTGCCCCCGACCG
AAGAAGCAACAGAAACGACGGCGGTAGTGCTGCGGCGGCGGCGGGAAGGT
CCGTGGTTTCCCCCCCGCCCCTCCCTCCGTCGTGGCGGTCGATCTACGGC
CGCCTCCACCGGGAGCTGCGCGGGCCGATGGGGGCTTTCTCCCCCTCGCA
CATGGTCATCGGGAAGAGCATCCAGGAG
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